data_7VDQ # _model_server_result.job_id iNdkVji1gjlJQK58cXTiIA _model_server_result.datetime_utc '2025-01-21 22:18:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vdq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 7VDQ # _exptl.entry_id 7VDQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.544 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[[7-[[2-fluoranyl-4-[3-(hydroxymethyl)pyrazol-1-yl]phenyl]amino]-1,6-naphthyridin-2-yl]-(1-methylpiperidin-4-yl)amino]ethanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7VDQ _cell.length_a 117.61 _cell.length_b 117.61 _cell.length_c 154.01 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VDQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,I 1 1 B,D,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C26 H28 F N7 O3' _chem_comp.formula_weight 505.544 _chem_comp.id 64V _chem_comp.mon_nstd_flag . _chem_comp.name '2-[[7-[[2-fluoranyl-4-[3-(hydroxymethyl)pyrazol-1-yl]phenyl]amino]-1,6-naphthyridin-2-yl]-(1-methylpiperidin-4-yl)amino]ethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F23 C22 64V sing 1 n n N18 C17 64V doub 2 n y N18 C19 64V sing 3 n y N20 C19 64V sing 4 n n N20 C21 64V sing 5 n n C17 C16 64V sing 6 n y C22 C21 64V doub 7 n y C22 C24 64V sing 8 n y C19 C35 64V doub 9 n y C21 C27 64V sing 10 n y C24 C25 64V doub 11 n y C16 C15 64V doub 12 n y C16 C36 64V sing 13 n y C15 C14 64V sing 14 n y C27 C26 64V doub 15 n y C35 C36 64V sing 16 n y C25 C26 64V sing 17 n y C25 N28 64V sing 18 n n O33 C32 64V sing 19 n n C36 N37 64V doub 20 n y N34 N28 64V sing 21 n y N34 C31 64V doub 22 n y N28 C29 64V sing 23 n y C14 C13 64V doub 24 n y C31 C32 64V sing 25 n n C31 C30 64V sing 26 n y C29 C30 64V doub 27 n y N37 C13 64V sing 28 n y C13 N8 64V sing 29 n n N8 C9 64V sing 30 n n N8 C5 64V sing 31 n n O11 C10 64V doub 32 n n C9 C10 64V sing 33 n n C10 O12 64V sing 34 n n C5 C4 64V sing 35 n n C5 C6 64V sing 36 n n C4 C3 64V sing 37 n n C3 N2 64V sing 38 n n C6 C7 64V sing 39 n n C7 N2 64V sing 40 n n N2 C1 64V sing 41 n n C4 H1 64V sing 42 n n C4 H2 64V sing 43 n n C5 H3 64V sing 44 n n C6 H4 64V sing 45 n n C6 H5 64V sing 46 n n C7 H6 64V sing 47 n n C7 H7 64V sing 48 n n C15 H8 64V sing 49 n n C17 H9 64V sing 50 n n C24 H10 64V sing 51 n n C26 H11 64V sing 52 n n C1 H12 64V sing 53 n n C1 H13 64V sing 54 n n C1 H14 64V sing 55 n n C3 H16 64V sing 56 n n C3 H17 64V sing 57 n n C9 H18 64V sing 58 n n C9 H19 64V sing 59 n n O12 H20 64V sing 60 n n C14 H21 64V sing 61 n n N20 H22 64V sing 62 n n C27 H23 64V sing 63 n n C29 H24 64V sing 64 n n C30 H25 64V sing 65 n n C32 H26 64V sing 66 n n C32 H27 64V sing 67 n n O33 H28 64V sing 68 n n C35 H29 64V sing 69 n n # _atom_sites.entry_id 7VDQ _atom_sites.fract_transf_matrix[1][1] 0.008503 _atom_sites.fract_transf_matrix[1][2] 0.004909 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006493 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 64V A 1 301 1 64V LIG . F 3 64V B 1 301 2 64V LIG . G 4 HOH A 1 401 2 HOH HOH . G 4 HOH A 2 402 5 HOH HOH . G 4 HOH A 3 403 6 HOH HOH . G 4 HOH A 4 404 7 HOH HOH . H 4 HOH B 1 401 4 HOH HOH . I 4 HOH C 1 401 3 HOH HOH . I 4 HOH C 2 402 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 64V . . . F 3 66.621 -42.207 66.867 1 95.42 ? C4 64V 301 B 1 HETATM 2 C C5 64V . . . F 3 65.298 -42.96 67.085 1 93.8 ? C5 64V 301 B 1 HETATM 3 C C6 64V . . . F 3 65.066 -43.838 65.849 1 86.35 ? C6 64V 301 B 1 HETATM 4 C C7 64V . . . F 3 64.884 -42.894 64.656 1 88.09 ? C7 64V 301 B 1 HETATM 5 C C10 64V . . . F 3 66.838 -45.637 68.315 1 99.42 ? C10 64V 301 B 1 HETATM 6 C C13 64V . . . F 3 65.382 -42.968 69.557 1 97.17 ? C13 64V 301 B 1 HETATM 7 C C15 64V . . . F 3 65.85 -42.878 71.924 1 96.2 ? C15 64V 301 B 1 HETATM 8 C C17 64V . . . F 3 65.519 -40.749 73.072 1 89.24 ? C17 64V 301 B 1 HETATM 9 C C21 64V . . . F 3 63.9 -36.749 71.024 1 102.42 ? C21 64V 301 B 1 HETATM 10 C C22 64V . . . F 3 62.555 -36.389 71.068 1 103.57 ? C22 64V 301 B 1 HETATM 11 C C24 64V . . . F 3 62.011 -35.608 70.055 1 103.16 ? C24 64V 301 B 1 HETATM 12 C C26 64V . . . F 3 64.154 -35.534 68.955 1 106.47 ? C26 64V 301 B 1 HETATM 13 C C1 64V . . . F 3 65.691 -40.971 63.4 1 92.23 ? C1 64V 301 B 1 HETATM 14 N N2 64V . . . F 3 65.997 -41.934 64.476 1 91.36 ? N2 64V 301 B 1 HETATM 15 C C3 64V . . . F 3 66.455 -41.237 65.695 1 94.05 ? C3 64V 301 B 1 HETATM 16 N N8 64V . . . F 3 65.35 -43.702 68.359 1 94.86 ? N8 64V 301 B 1 HETATM 17 C C9 64V . . . F 3 65.401 -45.175 68.371 1 95.46 ? C9 64V 301 B 1 HETATM 18 O O11 64V . . . F 3 67.849 -44.854 68.729 1 91.23 ? O11 64V 301 B 1 HETATM 19 O O12 64V . . . F 3 67.086 -46.741 67.897 1 112.5 ? O12 64V 301 B 1 HETATM 20 C C14 64V . . . F 3 65.8 -43.587 70.76 1 96.95 ? C14 64V 301 B 1 HETATM 21 C C16 64V . . . F 3 65.484 -41.522 71.907 1 92.81 ? C16 64V 301 B 1 HETATM 22 N N18 64V . . . F 3 65.172 -39.487 73.032 1 89.73 ? N18 64V 301 B 1 HETATM 23 C C19 64V . . . F 3 64.78 -38.876 71.919 1 90.47 ? C19 64V 301 B 1 HETATM 24 N N20 64V . . . F 3 64.45 -37.528 72.052 1 96.38 ? N20 64V 301 B 1 HETATM 25 F F23 64V . . . F 3 61.789 -36.817 72.096 1 104.02 ? F23 64V 301 B 1 HETATM 26 C C25 64V . . . F 3 62.805 -35.174 68.987 1 106.46 ? C25 64V 301 B 1 HETATM 27 C C27 64V . . . F 3 64.695 -36.311 69.969 1 108.19 ? C27 64V 301 B 1 HETATM 28 N N28 64V . . . F 3 62.247 -34.372 67.965 1 106.79 ? N28 64V 301 B 1 HETATM 29 C C29 64V . . . F 3 62.904 -33.697 66.987 1 104.3 ? C29 64V 301 B 1 HETATM 30 C C30 64V . . . F 3 61.986 -33.049 66.232 1 104.02 ? C30 64V 301 B 1 HETATM 31 C C31 64V . . . F 3 60.722 -33.323 66.764 1 103.64 ? C31 64V 301 B 1 HETATM 32 C C32 64V . . . F 3 59.4 -32.817 66.247 1 104.82 ? C32 64V 301 B 1 HETATM 33 O O33 64V . . . F 3 59.167 -31.487 66.718 1 101.5 ? O33 64V 301 B 1 HETATM 34 N N34 64V . . . F 3 60.88 -34.107 67.794 1 106.73 ? N34 64V 301 B 1 HETATM 35 C C35 64V . . . F 3 64.713 -39.563 70.71 1 92.5 ? C35 64V 301 B 1 HETATM 36 C C36 64V . . . F 3 65.073 -40.93 70.679 1 92.04 ? C36 64V 301 B 1 HETATM 37 N N37 64V . . . F 3 65.04 -41.675 69.558 1 90.55 ? N37 64V 301 B 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 37 #