data_7VDR
#
_model_server_result.job_id            7qr6l_5LGNkED3AafNeREQ 
_model_server_result.datetime_utc      '2024-10-10 13:23:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vdr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":301}' 
#
_entry.id    7VDR 
#
_exptl.entry_id    7VDR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              446.52 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R)-1-[7-[(2-fluoranyl-4-pyrazol-1-yl-phenyl)amino]-1,6-naphthyridin-2-yl]-1-(1-methylpiperidin-4-yl)ethanol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7VDR 
_cell.length_a            117.83 
_cell.length_b            117.83 
_cell.length_c            154.93 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VDR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,J,K,L,M,N,P,Q,S 1 1 
B,D,O,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 O N N 
#
_chem_comp.formula           'C25 H27 F N6 O' 
_chem_comp.formula_weight    446.52 
_chem_comp.id                63I 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R)-1-[7-[(2-fluoranyl-4-pyrazol-1-yl-phenyl)amino]-1,6-naphthyridin-2-yl]-1-(1-methylpiperidin-4-yl)ethanol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F25 C24 63I sing 1 n n 
N16 C15 63I doub 2 n y 
N16 C17 63I sing 3 n y 
C15 C14 63I sing 4 n y 
N18 C17 63I sing 5 n n 
N18 C19 63I sing 6 n n 
C24 C19 63I doub 7 n y 
C24 C23 63I sing 8 n y 
C17 C31 63I doub 9 n y 
C19 C20 63I sing 10 n y 
C23 C22 63I doub 11 n y 
C14 C13 63I doub 12 n y 
C14 C32 63I sing 13 n y 
C13 C12 63I sing 14 n y 
C31 C32 63I sing 15 n y 
C20 C21 63I doub 16 n y 
C22 C21 63I sing 17 n y 
C22 N26 63I sing 18 n n 
C32 N33 63I doub 19 n y 
N30 N26 63I sing 20 n y 
N30 C29 63I doub 21 n y 
N26 C27 63I sing 22 n y 
C12 C11 63I doub 23 n y 
C29 C28 63I sing 24 n y 
N33 C11 63I sing 25 n y 
C11 C8 63I sing 26 n n 
C27 C28 63I doub 27 n y 
C8 O10 63I sing 28 n n 
C8 C9 63I sing 29 n n 
C8 C5 63I sing 30 n n 
C4 C5 63I sing 31 n n 
C4 C3 63I sing 32 n n 
C5 C6 63I sing 33 n n 
C3 N2 63I sing 34 n n 
C6 C7 63I sing 35 n n 
N2 C7 63I sing 36 n n 
N2 C1 63I sing 37 n n 
C4 H1 63I sing 38 n n 
C4 H2 63I sing 39 n n 
C5 H3 63I sing 40 n n 
C6 H4 63I sing 41 n n 
C6 H5 63I sing 42 n n 
C7 H6 63I sing 43 n n 
C7 H7 63I sing 44 n n 
C13 H8 63I sing 45 n n 
C15 H9 63I sing 46 n n 
C20 H10 63I sing 47 n n 
C21 H11 63I sing 48 n n 
C28 H12 63I sing 49 n n 
C1 H13 63I sing 50 n n 
C1 H14 63I sing 51 n n 
C1 H15 63I sing 52 n n 
C3 H17 63I sing 53 n n 
C3 H18 63I sing 54 n n 
C9 H19 63I sing 55 n n 
C9 H20 63I sing 56 n n 
C9 H21 63I sing 57 n n 
O10 H22 63I sing 58 n n 
C12 H23 63I sing 59 n n 
N18 H24 63I sing 60 n n 
C23 H25 63I sing 61 n n 
C27 H26 63I sing 62 n n 
C29 H27 63I sing 63 n n 
C31 H28 63I sing 64 n n 
#
_atom_sites.entry_id                     7VDR 
_atom_sites.fract_transf_matrix[1][1]    0.008487 
_atom_sites.fract_transf_matrix[1][2]    0.0049 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0098 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006455 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 63I A 1 301 1 63I LIG . 
F 4 PGE A 1 302 1 PGE PGE . 
G 5 EDO A 1 303 1 EDO EDO . 
H 5 EDO A 1 304 2 EDO EDO . 
I 5 EDO A 1 305 4 EDO EDO . 
J 5 EDO A 1 306 5 EDO EDO . 
K 5 EDO A 1 307 6 EDO EDO . 
L 5 EDO A 1 308 7 EDO EDO . 
M 5 EDO A 1 309 8 EDO EDO . 
N 5 EDO A 1 310 9 EDO EDO . 
O 3 63I B 1 301 2 63I LIG . 
P 5 EDO C 1 401 3 EDO EDO . 
Q 6 HOH A 1 401 51 HOH HOH . 
Q 6 HOH A 2 402 11 HOH HOH . 
Q 6 HOH A 3 403 63 HOH HOH . 
Q 6 HOH A 4 404 31 HOH HOH . 
Q 6 HOH A 5 405 24 HOH HOH . 
Q 6 HOH A 6 406 37 HOH HOH . 
Q 6 HOH A 7 407 48 HOH HOH . 
Q 6 HOH A 8 408 35 HOH HOH . 
Q 6 HOH A 9 409 18 HOH HOH . 
Q 6 HOH A 10 410 10 HOH HOH . 
Q 6 HOH A 11 411 30 HOH HOH . 
Q 6 HOH A 12 412 58 HOH HOH . 
Q 6 HOH A 13 413 16 HOH HOH . 
Q 6 HOH A 14 414 67 HOH HOH . 
Q 6 HOH A 15 415 53 HOH HOH . 
Q 6 HOH A 16 416 49 HOH HOH . 
Q 6 HOH A 17 417 50 HOH HOH . 
Q 6 HOH A 18 418 36 HOH HOH . 
Q 6 HOH A 19 419 27 HOH HOH . 
Q 6 HOH A 20 420 25 HOH HOH . 
Q 6 HOH A 21 421 6 HOH HOH . 
Q 6 HOH A 22 422 46 HOH HOH . 
Q 6 HOH A 23 423 7 HOH HOH . 
Q 6 HOH A 24 424 13 HOH HOH . 
Q 6 HOH A 25 425 15 HOH HOH . 
Q 6 HOH A 26 426 23 HOH HOH . 
Q 6 HOH A 27 427 9 HOH HOH . 
Q 6 HOH A 28 428 28 HOH HOH . 
Q 6 HOH A 29 429 42 HOH HOH . 
Q 6 HOH A 30 430 38 HOH HOH . 
Q 6 HOH A 31 431 17 HOH HOH . 
Q 6 HOH A 32 432 22 HOH HOH . 
Q 6 HOH A 33 433 4 HOH HOH . 
Q 6 HOH A 34 434 66 HOH HOH . 
Q 6 HOH A 35 435 14 HOH HOH . 
Q 6 HOH A 36 436 8 HOH HOH . 
Q 6 HOH A 37 437 26 HOH HOH . 
Q 6 HOH A 38 438 64 HOH HOH . 
Q 6 HOH A 39 439 56 HOH HOH . 
Q 6 HOH A 40 440 60 HOH HOH . 
Q 6 HOH A 41 441 21 HOH HOH . 
R 6 HOH B 1 401 59 HOH HOH . 
R 6 HOH B 2 402 44 HOH HOH . 
R 6 HOH B 3 403 33 HOH HOH . 
R 6 HOH B 4 404 39 HOH HOH . 
R 6 HOH B 5 405 41 HOH HOH . 
R 6 HOH B 6 406 29 HOH HOH . 
R 6 HOH B 7 407 45 HOH HOH . 
R 6 HOH B 8 408 3 HOH HOH . 
R 6 HOH B 9 409 5 HOH HOH . 
R 6 HOH B 10 410 61 HOH HOH . 
R 6 HOH B 11 411 69 HOH HOH . 
R 6 HOH B 12 412 57 HOH HOH . 
R 6 HOH B 13 413 20 HOH HOH . 
R 6 HOH B 14 414 55 HOH HOH . 
R 6 HOH B 15 415 43 HOH HOH . 
S 6 HOH C 1 501 2 HOH HOH . 
S 6 HOH C 2 502 1 HOH HOH . 
S 6 HOH C 3 503 34 HOH HOH . 
S 6 HOH C 4 504 52 HOH HOH . 
S 6 HOH C 5 505 47 HOH HOH . 
S 6 HOH C 6 506 19 HOH HOH . 
S 6 HOH C 7 507 40 HOH HOH . 
S 6 HOH C 8 508 65 HOH HOH . 
S 6 HOH C 9 509 54 HOH HOH . 
S 6 HOH C 10 510 12 HOH HOH . 
S 6 HOH C 11 511 68 HOH HOH . 
S 6 HOH C 12 512 32 HOH HOH . 
S 6 HOH C 13 513 62 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 63I . . . O 3 66.491 -42.241 66.685 1 68.65 ? C4 63I 301 B 1 
HETATM 2 C C5 63I . . . O 3 65.231 -43.078 66.943 1 72.25 ? C5 63I 301 B 1 
HETATM 3 C C6 63I . . . O 3 64.987 -43.952 65.707 1 69.9 ? C6 63I 301 B 1 
HETATM 4 C C7 63I . . . O 3 64.774 -43.061 64.484 1 69.46 ? C7 63I 301 B 1 
HETATM 5 C C8 63I . . . O 3 65.388 -43.964 68.192 1 77.79 ? C8 63I 301 B 1 
HETATM 6 C C13 63I . . . O 3 66.467 -42.974 71.679 1 89.22 ? C13 63I 301 B 1 
HETATM 7 C C15 63I . . . O 3 66.115 -40.859 72.887 1 90.83 ? C15 63I 301 B 1 
HETATM 8 C C17 63I . . . O 3 64.971 -39.094 71.895 1 89.52 ? C17 63I 301 B 1 
HETATM 9 C C20 63I . . . O 3 64.649 -36.81 69.831 1 95.23 ? C20 63I 301 B 1 
HETATM 10 C C21 63I . . . O 3 64.127 -35.944 68.88 1 92.42 ? C21 63I 301 B 1 
HETATM 11 C C22 63I . . . O 3 63.001 -35.165 69.165 1 91.93 ? C22 63I 301 B 1 
HETATM 12 C C24 63I . . . O 3 62.921 -36.154 71.368 1 95.58 ? C24 63I 301 B 1 
HETATM 13 C C28 63I . . . O 3 62.149 -33.03 66.435 1 78.61 ? C28 63I 301 B 1 
HETATM 14 C C1 63I . . . O 3 65.71 -41.31 63.088 1 68.81 ? C1 63I 301 B 1 
HETATM 15 N N2 63I . . . O 3 65.904 -42.141 64.29 1 70.57 ? N2 63I 301 B 1 
HETATM 16 C C3 63I . . . O 3 66.224 -41.336 65.483 1 68.73 ? C3 63I 301 B 1 
HETATM 17 C C9 63I . . . O 3 64.137 -44.818 68.391 1 77.57 ? C9 63I 301 B 1 
HETATM 18 O O10 63I . . . O 3 66.495 -44.845 67.984 1 77.93 ? O10 63I 301 B 1 
HETATM 19 C C11 63I . . . O 3 65.586 -43.134 69.451 1 83.29 ? C11 63I 301 B 1 
HETATM 20 C C12 63I . . . O 3 66.275 -43.7 70.531 1 86.51 ? C12 63I 301 B 1 
HETATM 21 C C14 63I . . . O 3 65.955 -41.663 71.746 1 88.86 ? C14 63I 301 B 1 
HETATM 22 N N16 63I . . . O 3 65.634 -39.636 72.919 1 89.84 ? N16 63I 301 B 1 
HETATM 23 N N18 63I . . . O 3 64.52 -37.785 72.093 1 90.83 ? N18 63I 301 B 1 
HETATM 24 C C19 63I . . . O 3 64.042 -36.931 71.083 1 95.78 ? C19 63I 301 B 1 
HETATM 25 C C23 63I . . . O 3 62.399 -35.285 70.422 1 94.63 ? C23 63I 301 B 1 
HETATM 26 F F25 63I . . . O 3 62.342 -36.264 72.578 1 92.25 ? F25 63I 301 B 1 
HETATM 27 N N26 63I . . . O 3 62.452 -34.278 68.21 1 85.07 ? N26 63I 301 B 1 
HETATM 28 C C27 63I . . . O 3 63.017 -33.857 67.055 1 80.46 ? C27 63I 301 B 1 
HETATM 29 C C29 63I . . . O 3 61.004 -32.934 67.227 1 79.49 ? C29 63I 301 B 1 
HETATM 30 N N30 63I . . . O 3 61.184 -33.68 68.284 1 82.87 ? N30 63I 301 B 1 
HETATM 31 C C31 63I . . . O 3 64.754 -39.818 70.722 1 88.5 ? C31 63I 301 B 1 
HETATM 32 C C32 63I . . . O 3 65.254 -41.136 70.623 1 86.48 ? C32 63I 301 B 1 
HETATM 33 N N33 63I . . . O 3 65.097 -41.899 69.529 1 85.92 ? N33 63I 301 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           33 
#