data_7VDR # _model_server_result.job_id ljzkIav5-6L1yifAPPUs4g _model_server_result.datetime_utc '2024-10-10 13:22:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vdr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 7VDR # _exptl.entry_id 7VDR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7VDR _cell.length_a 117.83 _cell.length_b 117.83 _cell.length_c 154.93 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VDR _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,K,L,M,N,P,Q,S 1 1 B,D,O,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 310 n n C1 C2 PGE sing 311 n n C1 H1 PGE sing 312 n n C1 H12 PGE sing 313 n n O1 HO1 PGE sing 314 n n C2 O2 PGE sing 315 n n C2 H2 PGE sing 316 n n C2 H22 PGE sing 317 n n O2 C3 PGE sing 318 n n C3 C4 PGE sing 319 n n C3 H3 PGE sing 320 n n C3 H32 PGE sing 321 n n C4 O3 PGE sing 322 n n C4 H4 PGE sing 323 n n C4 H42 PGE sing 324 n n O4 C6 PGE sing 325 n n O4 HO4 PGE sing 326 n n C6 C5 PGE sing 327 n n C6 H6 PGE sing 328 n n C6 H62 PGE sing 329 n n C5 O3 PGE sing 330 n n C5 H5 PGE sing 331 n n C5 H52 PGE sing 332 n n # _atom_sites.entry_id 7VDR _atom_sites.fract_transf_matrix[1][1] 0.008487 _atom_sites.fract_transf_matrix[1][2] 0.0049 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 63I A 1 301 1 63I LIG . F 4 PGE A 1 302 1 PGE PGE . G 5 EDO A 1 303 1 EDO EDO . H 5 EDO A 1 304 2 EDO EDO . I 5 EDO A 1 305 4 EDO EDO . J 5 EDO A 1 306 5 EDO EDO . K 5 EDO A 1 307 6 EDO EDO . L 5 EDO A 1 308 7 EDO EDO . M 5 EDO A 1 309 8 EDO EDO . N 5 EDO A 1 310 9 EDO EDO . O 3 63I B 1 301 2 63I LIG . P 5 EDO C 1 401 3 EDO EDO . Q 6 HOH A 1 401 51 HOH HOH . Q 6 HOH A 2 402 11 HOH HOH . Q 6 HOH A 3 403 63 HOH HOH . Q 6 HOH A 4 404 31 HOH HOH . Q 6 HOH A 5 405 24 HOH HOH . Q 6 HOH A 6 406 37 HOH HOH . Q 6 HOH A 7 407 48 HOH HOH . Q 6 HOH A 8 408 35 HOH HOH . Q 6 HOH A 9 409 18 HOH HOH . Q 6 HOH A 10 410 10 HOH HOH . Q 6 HOH A 11 411 30 HOH HOH . Q 6 HOH A 12 412 58 HOH HOH . Q 6 HOH A 13 413 16 HOH HOH . Q 6 HOH A 14 414 67 HOH HOH . Q 6 HOH A 15 415 53 HOH HOH . Q 6 HOH A 16 416 49 HOH HOH . Q 6 HOH A 17 417 50 HOH HOH . Q 6 HOH A 18 418 36 HOH HOH . Q 6 HOH A 19 419 27 HOH HOH . Q 6 HOH A 20 420 25 HOH HOH . Q 6 HOH A 21 421 6 HOH HOH . Q 6 HOH A 22 422 46 HOH HOH . Q 6 HOH A 23 423 7 HOH HOH . Q 6 HOH A 24 424 13 HOH HOH . Q 6 HOH A 25 425 15 HOH HOH . Q 6 HOH A 26 426 23 HOH HOH . Q 6 HOH A 27 427 9 HOH HOH . Q 6 HOH A 28 428 28 HOH HOH . Q 6 HOH A 29 429 42 HOH HOH . Q 6 HOH A 30 430 38 HOH HOH . Q 6 HOH A 31 431 17 HOH HOH . Q 6 HOH A 32 432 22 HOH HOH . Q 6 HOH A 33 433 4 HOH HOH . Q 6 HOH A 34 434 66 HOH HOH . Q 6 HOH A 35 435 14 HOH HOH . Q 6 HOH A 36 436 8 HOH HOH . Q 6 HOH A 37 437 26 HOH HOH . Q 6 HOH A 38 438 64 HOH HOH . Q 6 HOH A 39 439 56 HOH HOH . Q 6 HOH A 40 440 60 HOH HOH . Q 6 HOH A 41 441 21 HOH HOH . R 6 HOH B 1 401 59 HOH HOH . R 6 HOH B 2 402 44 HOH HOH . R 6 HOH B 3 403 33 HOH HOH . R 6 HOH B 4 404 39 HOH HOH . R 6 HOH B 5 405 41 HOH HOH . R 6 HOH B 6 406 29 HOH HOH . R 6 HOH B 7 407 45 HOH HOH . R 6 HOH B 8 408 3 HOH HOH . R 6 HOH B 9 409 5 HOH HOH . R 6 HOH B 10 410 61 HOH HOH . R 6 HOH B 11 411 69 HOH HOH . R 6 HOH B 12 412 57 HOH HOH . R 6 HOH B 13 413 20 HOH HOH . R 6 HOH B 14 414 55 HOH HOH . R 6 HOH B 15 415 43 HOH HOH . S 6 HOH C 1 501 2 HOH HOH . S 6 HOH C 2 502 1 HOH HOH . S 6 HOH C 3 503 34 HOH HOH . S 6 HOH C 4 504 52 HOH HOH . S 6 HOH C 5 505 47 HOH HOH . S 6 HOH C 6 506 19 HOH HOH . S 6 HOH C 7 507 40 HOH HOH . S 6 HOH C 8 508 65 HOH HOH . S 6 HOH C 9 509 54 HOH HOH . S 6 HOH C 10 510 12 HOH HOH . S 6 HOH C 11 511 68 HOH HOH . S 6 HOH C 12 512 32 HOH HOH . S 6 HOH C 13 513 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . F 4 55.935 -37.618 61.166 1 107.3 ? C1 PGE 302 A 1 HETATM 2 O O1 PGE . . . F 4 55.993 -36.212 60.994 1 104.25 ? O1 PGE 302 A 1 HETATM 3 C C2 PGE . . . F 4 54.658 -38.215 60.645 1 106.9 ? C2 PGE 302 A 1 HETATM 4 O O2 PGE . . . F 4 54.938 -39.389 59.883 1 105.04 ? O2 PGE 302 A 1 HETATM 5 C C3 PGE . . . F 4 54.807 -39.212 58.475 1 98.65 ? C3 PGE 302 A 1 HETATM 6 C C4 PGE . . . F 4 55.911 -38.328 57.962 1 97.18 ? C4 PGE 302 A 1 HETATM 7 O O4 PGE . . . F 4 55.512 -34.707 55.072 1 79.35 ? O4 PGE 302 A 1 HETATM 8 C C6 PGE . . . F 4 55.39 -36.125 55.122 1 85.41 ? C6 PGE 302 A 1 HETATM 9 C C5 PGE . . . F 4 56.214 -36.729 56.225 1 87.22 ? C5 PGE 302 A 1 HETATM 10 O O3 PGE . . . F 4 55.679 -37.997 56.595 1 90 ? O3 PGE 302 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #