data_7VDR
#
_model_server_result.job_id            K9m8rO-FINyBb_JQUE234g 
_model_server_result.datetime_utc      '2024-10-10 13:33:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vdr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":303}' 
#
_entry.id    7VDR 
#
_exptl.entry_id    7VDR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7VDR 
_cell.length_a            117.83 
_cell.length_b            117.83 
_cell.length_c            154.93 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VDR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,J,K,L,M,N,P,Q,S 1 1 
B,D,O,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 P N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 147 n n 
C1 C2 EDO sing 148 n n 
C1 H11 EDO sing 149 n n 
C1 H12 EDO sing 150 n n 
O1 HO1 EDO sing 151 n n 
C2 O2 EDO sing 152 n n 
C2 H21 EDO sing 153 n n 
C2 H22 EDO sing 154 n n 
O2 HO2 EDO sing 155 n n 
#
_atom_sites.entry_id                     7VDR 
_atom_sites.fract_transf_matrix[1][1]    0.008487 
_atom_sites.fract_transf_matrix[1][2]    0.0049 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0098 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006455 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 63I A 1 301 1 63I LIG . 
F 4 PGE A 1 302 1 PGE PGE . 
G 5 EDO A 1 303 1 EDO EDO . 
H 5 EDO A 1 304 2 EDO EDO . 
I 5 EDO A 1 305 4 EDO EDO . 
J 5 EDO A 1 306 5 EDO EDO . 
K 5 EDO A 1 307 6 EDO EDO . 
L 5 EDO A 1 308 7 EDO EDO . 
M 5 EDO A 1 309 8 EDO EDO . 
N 5 EDO A 1 310 9 EDO EDO . 
O 3 63I B 1 301 2 63I LIG . 
P 5 EDO C 1 401 3 EDO EDO . 
Q 6 HOH A 1 401 51 HOH HOH . 
Q 6 HOH A 2 402 11 HOH HOH . 
Q 6 HOH A 3 403 63 HOH HOH . 
Q 6 HOH A 4 404 31 HOH HOH . 
Q 6 HOH A 5 405 24 HOH HOH . 
Q 6 HOH A 6 406 37 HOH HOH . 
Q 6 HOH A 7 407 48 HOH HOH . 
Q 6 HOH A 8 408 35 HOH HOH . 
Q 6 HOH A 9 409 18 HOH HOH . 
Q 6 HOH A 10 410 10 HOH HOH . 
Q 6 HOH A 11 411 30 HOH HOH . 
Q 6 HOH A 12 412 58 HOH HOH . 
Q 6 HOH A 13 413 16 HOH HOH . 
Q 6 HOH A 14 414 67 HOH HOH . 
Q 6 HOH A 15 415 53 HOH HOH . 
Q 6 HOH A 16 416 49 HOH HOH . 
Q 6 HOH A 17 417 50 HOH HOH . 
Q 6 HOH A 18 418 36 HOH HOH . 
Q 6 HOH A 19 419 27 HOH HOH . 
Q 6 HOH A 20 420 25 HOH HOH . 
Q 6 HOH A 21 421 6 HOH HOH . 
Q 6 HOH A 22 422 46 HOH HOH . 
Q 6 HOH A 23 423 7 HOH HOH . 
Q 6 HOH A 24 424 13 HOH HOH . 
Q 6 HOH A 25 425 15 HOH HOH . 
Q 6 HOH A 26 426 23 HOH HOH . 
Q 6 HOH A 27 427 9 HOH HOH . 
Q 6 HOH A 28 428 28 HOH HOH . 
Q 6 HOH A 29 429 42 HOH HOH . 
Q 6 HOH A 30 430 38 HOH HOH . 
Q 6 HOH A 31 431 17 HOH HOH . 
Q 6 HOH A 32 432 22 HOH HOH . 
Q 6 HOH A 33 433 4 HOH HOH . 
Q 6 HOH A 34 434 66 HOH HOH . 
Q 6 HOH A 35 435 14 HOH HOH . 
Q 6 HOH A 36 436 8 HOH HOH . 
Q 6 HOH A 37 437 26 HOH HOH . 
Q 6 HOH A 38 438 64 HOH HOH . 
Q 6 HOH A 39 439 56 HOH HOH . 
Q 6 HOH A 40 440 60 HOH HOH . 
Q 6 HOH A 41 441 21 HOH HOH . 
R 6 HOH B 1 401 59 HOH HOH . 
R 6 HOH B 2 402 44 HOH HOH . 
R 6 HOH B 3 403 33 HOH HOH . 
R 6 HOH B 4 404 39 HOH HOH . 
R 6 HOH B 5 405 41 HOH HOH . 
R 6 HOH B 6 406 29 HOH HOH . 
R 6 HOH B 7 407 45 HOH HOH . 
R 6 HOH B 8 408 3 HOH HOH . 
R 6 HOH B 9 409 5 HOH HOH . 
R 6 HOH B 10 410 61 HOH HOH . 
R 6 HOH B 11 411 69 HOH HOH . 
R 6 HOH B 12 412 57 HOH HOH . 
R 6 HOH B 13 413 20 HOH HOH . 
R 6 HOH B 14 414 55 HOH HOH . 
R 6 HOH B 15 415 43 HOH HOH . 
S 6 HOH C 1 501 2 HOH HOH . 
S 6 HOH C 2 502 1 HOH HOH . 
S 6 HOH C 3 503 34 HOH HOH . 
S 6 HOH C 4 504 52 HOH HOH . 
S 6 HOH C 5 505 47 HOH HOH . 
S 6 HOH C 6 506 19 HOH HOH . 
S 6 HOH C 7 507 40 HOH HOH . 
S 6 HOH C 8 508 65 HOH HOH . 
S 6 HOH C 9 509 54 HOH HOH . 
S 6 HOH C 10 510 12 HOH HOH . 
S 6 HOH C 11 511 68 HOH HOH . 
S 6 HOH C 12 512 32 HOH HOH . 
S 6 HOH C 13 513 62 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 5 37.005 -39.844 49.965 1 76.52 ? C1 EDO 303 A 1 
HETATM 2 O O1 EDO . . . G 5 36.233 -40.879 50.552 1 74.62 ? O1 EDO 303 A 1 
HETATM 3 C C2 EDO . . . G 5 36.506 -39.406 48.632 1 78.9 ? C2 EDO 303 A 1 
HETATM 4 O O2 EDO . . . G 5 36.361 -37.999 48.505 1 79.14 ? O2 EDO 303 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#