data_7VDS
#
_model_server_result.job_id            sGeOSHG7Rj398SZi5k8_3Q 
_model_server_result.datetime_utc      '2024-12-26 11:15:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vds 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    7VDS 
#
_exptl.entry_id    7VDS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              490.572 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-fluoranyl-4-[[2-[(1R)-1-(1-methylpiperidin-4-yl)-1-oxidanyl-ethyl]-1,6-naphthyridin-7-yl]amino]-2-morpholin-4-yl-benzenecarbonitrile 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7VDS 
_cell.length_a            118.06 
_cell.length_b            118.06 
_cell.length_c            153.69 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VDS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,CB 1 1 
B,D,FA,GA,HA,BB 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H31 F N6 O2' 
_chem_comp.formula_weight    490.572 
_chem_comp.id                61U 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-fluoranyl-4-[[2-[(1R)-1-(1-methylpiperidin-4-yl)-1-oxidanyl-ethyl]-1,6-naphthyridin-7-yl]amino]-2-morpholin-4-yl-benzenecarbonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C20 O2 61U sing 1 n n 
C20 C21 61U sing 2 n n 
O2 C19 61U sing 3 n n 
C19 C18 61U sing 4 n n 
C21 N4 61U sing 5 n n 
N4 C18 61U sing 6 n n 
N4 C17 61U sing 7 n n 
N2 C13 61U doub 8 n y 
N2 C14 61U sing 9 n y 
C16 C17 61U doub 10 n y 
C16 C15 61U sing 11 n y 
N3 C15 61U sing 12 n n 
N3 C14 61U sing 13 n n 
C13 C12 61U sing 14 n y 
C17 C22 61U sing 15 n y 
C15 C24 61U doub 16 n y 
C14 C26 61U doub 17 n y 
C12 C11 61U doub 18 n y 
C12 C27 61U sing 19 n y 
C22 C25 61U sing 20 n n 
C22 C23 61U doub 21 n y 
C24 C23 61U sing 22 n y 
C24 F 61U sing 23 n n 
C11 C10 61U sing 24 n y 
C26 C27 61U sing 25 n y 
C25 N5 61U trip 26 n n 
C27 N6 61U doub 27 n y 
C10 C9 61U doub 28 n y 
N6 C9 61U sing 29 n y 
C9 C7 61U sing 30 n n 
C7 C8 61U sing 31 n n 
C7 O1 61U sing 32 n n 
C7 C4 61U sing 33 n n 
C3 C4 61U sing 34 n n 
C3 C2 61U sing 35 n n 
C4 C5 61U sing 36 n n 
C2 N1 61U sing 37 n n 
C5 C6 61U sing 38 n n 
N1 C6 61U sing 39 n n 
N1 C1 61U sing 40 n n 
N3 H2 61U sing 41 n n 
C4 H3 61U sing 42 n n 
C5 H4 61U sing 43 n n 
C5 H5 61U sing 44 n n 
C6 H6 61U sing 45 n n 
C6 H7 61U sing 46 n n 
C8 H8 61U sing 47 n n 
C8 H9 61U sing 48 n n 
C8 H10 61U sing 49 n n 
C10 H11 61U sing 50 n n 
C13 H12 61U sing 51 n n 
C20 H13 61U sing 52 n n 
C20 H14 61U sing 53 n n 
C21 H15 61U sing 54 n n 
C21 H16 61U sing 55 n n 
C26 H17 61U sing 56 n n 
C1 H18 61U sing 57 n n 
C1 H19 61U sing 58 n n 
C1 H20 61U sing 59 n n 
C2 H21 61U sing 60 n n 
C2 H22 61U sing 61 n n 
C3 H23 61U sing 62 n n 
C3 H24 61U sing 63 n n 
O1 H25 61U sing 64 n n 
C11 H26 61U sing 65 n n 
C16 H27 61U sing 66 n n 
C18 H28 61U sing 67 n n 
C18 H29 61U sing 68 n n 
C19 H30 61U sing 69 n n 
C19 H31 61U sing 70 n n 
C23 H32 61U sing 71 n n 
#
_atom_sites.entry_id                     7VDS 
_atom_sites.fract_transf_matrix[1][1]    0.00847 
_atom_sites.fract_transf_matrix[1][2]    0.00489 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009781 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006507 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 61U A 1 301 1 61U LIG . 
F 4 GOL A 1 302 1 GOL GOL . 
G 4 GOL A 1 303 2 GOL GOL . 
H 4 GOL A 1 304 3 GOL GOL . 
I 4 GOL A 1 305 4 GOL GOL . 
J 4 GOL A 1 306 6 GOL GOL . 
K 4 GOL A 1 307 7 GOL GOL . 
L 4 GOL A 1 308 8 GOL GOL . 
M 5 EDO A 1 309 3 EDO EDO . 
N 5 EDO A 1 310 5 EDO EDO . 
O 5 EDO A 1 311 6 EDO EDO . 
P 5 EDO A 1 312 8 EDO EDO . 
Q 5 EDO A 1 313 9 EDO EDO . 
R 5 EDO A 1 314 13 EDO EDO . 
S 5 EDO A 1 315 16 EDO EDO . 
T 5 EDO A 1 316 19 EDO EDO . 
U 5 EDO A 1 317 20 EDO EDO . 
V 6 CL A 1 318 1 CL CL . 
W 6 CL A 1 319 2 CL CL . 
X 6 CL A 1 320 4 CL CL . 
Y 6 CL A 1 321 5 CL CL . 
Z 6 CL A 1 322 7 CL CL . 
AA 6 CL A 1 323 9 CL CL . 
BA 6 CL A 1 324 10 CL CL . 
CA 6 CL A 1 325 13 CL CL . 
DA 6 CL A 1 326 16 CL CL . 
EA 6 CL A 1 327 18 CL CL . 
FA 5 EDO B 1 301 4 EDO EDO . 
GA 5 EDO B 1 302 11 EDO EDO . 
HA 5 EDO B 1 303 12 EDO EDO . 
IA 4 GOL C 1 401 5 GOL GOL . 
JA 5 EDO C 1 402 1 EDO EDO . 
KA 5 EDO C 1 403 2 EDO EDO . 
LA 5 EDO C 1 404 7 EDO EDO . 
MA 5 EDO C 1 405 10 EDO EDO . 
NA 5 EDO C 1 406 14 EDO EDO . 
OA 5 EDO C 1 407 15 EDO EDO . 
PA 5 EDO C 1 408 17 EDO EDO . 
QA 5 EDO C 1 409 18 EDO EDO . 
RA 6 CL C 1 410 3 CL CL . 
SA 6 CL C 1 411 6 CL CL . 
TA 6 CL C 1 412 8 CL CL . 
UA 6 CL C 1 413 11 CL CL . 
VA 6 CL C 1 414 12 CL CL . 
WA 6 CL C 1 415 14 CL CL . 
XA 6 CL C 1 416 15 CL CL . 
YA 6 CL C 1 417 17 CL CL . 
ZA 6 CL C 1 418 19 CL CL . 
AB 7 HOH A 1 401 5 HOH HOH . 
AB 7 HOH A 2 402 17 HOH HOH . 
AB 7 HOH A 3 403 26 HOH HOH . 
AB 7 HOH A 4 404 12 HOH HOH . 
AB 7 HOH A 5 405 32 HOH HOH . 
AB 7 HOH A 6 406 24 HOH HOH . 
AB 7 HOH A 7 407 13 HOH HOH . 
AB 7 HOH A 8 408 11 HOH HOH . 
AB 7 HOH A 9 409 36 HOH HOH . 
AB 7 HOH A 10 410 60 HOH HOH . 
AB 7 HOH A 11 411 9 HOH HOH . 
AB 7 HOH A 12 412 35 HOH HOH . 
AB 7 HOH A 13 413 44 HOH HOH . 
AB 7 HOH A 14 414 69 HOH HOH . 
AB 7 HOH A 15 415 54 HOH HOH . 
AB 7 HOH A 16 416 20 HOH HOH . 
AB 7 HOH A 17 417 8 HOH HOH . 
AB 7 HOH A 18 418 34 HOH HOH . 
AB 7 HOH A 19 419 71 HOH HOH . 
AB 7 HOH A 20 420 67 HOH HOH . 
AB 7 HOH A 21 421 25 HOH HOH . 
AB 7 HOH A 22 422 63 HOH HOH . 
AB 7 HOH A 23 423 59 HOH HOH . 
AB 7 HOH A 24 424 3 HOH HOH . 
AB 7 HOH A 25 425 1 HOH HOH . 
AB 7 HOH A 26 426 7 HOH HOH . 
AB 7 HOH A 27 427 47 HOH HOH . 
AB 7 HOH A 28 428 42 HOH HOH . 
AB 7 HOH A 29 429 31 HOH HOH . 
AB 7 HOH A 30 430 57 HOH HOH . 
AB 7 HOH A 31 431 43 HOH HOH . 
AB 7 HOH A 32 432 4 HOH HOH . 
AB 7 HOH A 33 433 27 HOH HOH . 
AB 7 HOH A 34 434 10 HOH HOH . 
AB 7 HOH A 35 435 30 HOH HOH . 
AB 7 HOH A 36 436 46 HOH HOH . 
AB 7 HOH A 37 437 68 HOH HOH . 
AB 7 HOH A 38 438 6 HOH HOH . 
AB 7 HOH A 39 439 52 HOH HOH . 
AB 7 HOH A 40 440 23 HOH HOH . 
AB 7 HOH A 41 441 45 HOH HOH . 
AB 7 HOH A 42 442 53 HOH HOH . 
AB 7 HOH A 43 443 64 HOH HOH . 
AB 7 HOH A 44 444 33 HOH HOH . 
AB 7 HOH A 45 445 22 HOH HOH . 
AB 7 HOH A 46 446 66 HOH HOH . 
AB 7 HOH A 47 447 51 HOH HOH . 
AB 7 HOH A 48 448 58 HOH HOH . 
BB 7 HOH B 1 401 62 HOH HOH . 
BB 7 HOH B 2 402 28 HOH HOH . 
BB 7 HOH B 3 403 29 HOH HOH . 
BB 7 HOH B 4 404 55 HOH HOH . 
CB 7 HOH C 1 501 18 HOH HOH . 
CB 7 HOH C 2 502 38 HOH HOH . 
CB 7 HOH C 3 503 40 HOH HOH . 
CB 7 HOH C 4 504 70 HOH HOH . 
CB 7 HOH C 5 505 19 HOH HOH . 
CB 7 HOH C 6 506 2 HOH HOH . 
CB 7 HOH C 7 507 48 HOH HOH . 
CB 7 HOH C 8 508 16 HOH HOH . 
CB 7 HOH C 9 509 15 HOH HOH . 
CB 7 HOH C 10 510 56 HOH HOH . 
CB 7 HOH C 11 511 49 HOH HOH . 
CB 7 HOH C 12 512 61 HOH HOH . 
CB 7 HOH C 13 513 37 HOH HOH . 
CB 7 HOH C 14 514 14 HOH HOH . 
CB 7 HOH C 15 515 65 HOH HOH . 
CB 7 HOH C 16 516 39 HOH HOH . 
CB 7 HOH C 17 517 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 61U . . . E 3 52.529 -34.831 57.433 1 80.95 ? N1 61U 301 A 1 
HETATM 2 N N3 61U . . . E 3 55.02 -36.776 48.866 1 104.25 ? N3 61U 301 A 1 
HETATM 3 C C4 61U . . . E 3 51.426 -36.481 55.304 1 83.78 ? C4 61U 301 A 1 
HETATM 4 C C5 61U . . . E 3 51.264 -36.803 56.797 1 87.63 ? C5 61U 301 A 1 
HETATM 5 C C6 61U . . . E 3 52.494 -36.289 57.543 1 82.72 ? C6 61U 301 A 1 
HETATM 6 C C7 61U . . . E 3 50.251 -37.006 54.439 1 81.24 ? C7 61U 301 A 1 
HETATM 7 C C8 61U . . . E 3 49.959 -38.493 54.661 1 80.43 ? C8 61U 301 A 1 
HETATM 8 C C10 61U . . . E 3 49.591 -36.404 52.13 1 85.57 ? C10 61U 301 A 1 
HETATM 9 C C13 61U . . . E 3 51.546 -36.158 49.051 1 92.31 ? C13 61U 301 A 1 
HETATM 10 C C15 61U . . . E 3 56.279 -36.581 49.467 1 116.56 ? C15 61U 301 A 1 
HETATM 11 C C17 61U . . . E 3 58.64 -37.17 49.324 1 125.31 ? C17 61U 301 A 1 
HETATM 12 C C20 61U . . . E 3 61.343 -37.694 46.94 1 123.99 ? C20 61U 301 A 1 
HETATM 13 C C21 61U . . . E 3 60.73 -36.982 48.138 1 120.91 ? C21 61U 301 A 1 
HETATM 14 C C22 61U . . . E 3 58.89 -36.375 50.466 1 128.42 ? C22 61U 301 A 1 
HETATM 15 C C24 61U . . . E 3 56.551 -35.788 50.604 1 118.95 ? C24 61U 301 A 1 
HETATM 16 C C26 61U . . . E 3 53.511 -36.945 50.821 1 99.81 ? C26 61U 301 A 1 
HETATM 17 C C1 61U . . . E 3 53.62 -34.305 58.262 1 84.04 ? C1 61U 301 A 1 
HETATM 18 C C2 61U . . . E 3 52.691 -34.428 56.029 1 82.59 ? C2 61U 301 A 1 
HETATM 19 C C3 61U . . . E 3 51.527 -34.949 55.184 1 84.26 ? C3 61U 301 A 1 
HETATM 20 O O1 61U . . . E 3 49.066 -36.24 54.72 1 70.03 ? O1 61U 301 A 1 
HETATM 21 C C9 61U . . . E 3 50.607 -36.802 52.995 1 82.81 ? C9 61U 301 A 1 
HETATM 22 C C11 61U . . . E 3 49.879 -36.203 50.817 1 89.76 ? C11 61U 301 A 1 
HETATM 23 C C12 61U . . . E 3 51.199 -36.378 50.387 1 90.91 ? C12 61U 301 A 1 
HETATM 24 N N2 61U . . . E 3 52.785 -36.292 48.665 1 95.32 ? N2 61U 301 A 1 
HETATM 25 C C14 61U . . . E 3 53.766 -36.672 49.477 1 98.74 ? C14 61U 301 A 1 
HETATM 26 C C16 61U . . . E 3 57.339 -37.248 48.844 1 123.15 ? C16 61U 301 A 1 
HETATM 27 N N4 61U . . . E 3 59.646 -37.847 48.628 1 122.58 ? N4 61U 301 A 1 
HETATM 28 C C18 61U . . . E 3 60.198 -39.079 49.198 1 129.4 ? C18 61U 301 A 1 
HETATM 29 C C19 61U . . . E 3 60.941 -39.808 48.067 1 128.58 ? C19 61U 301 A 1 
HETATM 30 O O2 61U . . . E 3 61.879 -38.934 47.417 1 121.79 ? O2 61U 301 A 1 
HETATM 31 C C23 61U . . . E 3 57.833 -35.7 51.088 1 123.82 ? C23 61U 301 A 1 
HETATM 32 F F 61U . . . E 3 55.617 -35.091 51.281 1 123.21 ? F 61U 301 A 1 
HETATM 33 C C25 61U . . . E 3 60.195 -36.232 51.025 1 130.89 ? C25 61U 301 A 1 
HETATM 34 N N5 61U . . . E 3 61.223 -36.103 51.479 1 142.03 ? N5 61U 301 A 1 
HETATM 35 C C27 61U . . . E 3 52.196 -36.781 51.316 1 91.65 ? C27 61U 301 A 1 
HETATM 36 N N6 61U . . . E 3 51.853 -36.989 52.592 1 83.91 ? N6 61U 301 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    45 
_model_server_stats.query_time_ms           369 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           36 
#