data_7VDS
#
_model_server_result.job_id            YLQdFMIkM2GByadbkfwzUw 
_model_server_result.datetime_utc      '2024-12-26 10:56:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vds 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":316}' 
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_entry.id    7VDS 
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_exptl.entry_id    7VDS 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    20 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7VDS 
_cell.length_a            118.06 
_cell.length_b            118.06 
_cell.length_c            153.69 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 7VDS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,CB 1 1 
B,D,FA,GA,HA,BB 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
? 5 Q N N 
? 5 R N N 
? 5 S N N 
? 5 T N N 
? 5 U N N 
? 5 FA N N 
? 5 GA N N 
? 5 HA N N 
? 5 JA N N 
? 5 KA N N 
? 5 LA N N 
? 5 MA N N 
? 5 NA N N 
? 5 OA N N 
? 5 PA N N 
? 5 QA N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 154 n n 
C1 C2 EDO sing 155 n n 
C1 H11 EDO sing 156 n n 
C1 H12 EDO sing 157 n n 
O1 HO1 EDO sing 158 n n 
C2 O2 EDO sing 159 n n 
C2 H21 EDO sing 160 n n 
C2 H22 EDO sing 161 n n 
O2 HO2 EDO sing 162 n n 
#
_atom_sites.entry_id                     7VDS 
_atom_sites.fract_transf_matrix[1][1]    0.00847 
_atom_sites.fract_transf_matrix[1][2]    0.00489 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009781 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006507 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 61U A 1 301 1 61U LIG . 
F 4 GOL A 1 302 1 GOL GOL . 
G 4 GOL A 1 303 2 GOL GOL . 
H 4 GOL A 1 304 3 GOL GOL . 
I 4 GOL A 1 305 4 GOL GOL . 
J 4 GOL A 1 306 6 GOL GOL . 
K 4 GOL A 1 307 7 GOL GOL . 
L 4 GOL A 1 308 8 GOL GOL . 
M 5 EDO A 1 309 3 EDO EDO . 
N 5 EDO A 1 310 5 EDO EDO . 
O 5 EDO A 1 311 6 EDO EDO . 
P 5 EDO A 1 312 8 EDO EDO . 
Q 5 EDO A 1 313 9 EDO EDO . 
R 5 EDO A 1 314 13 EDO EDO . 
S 5 EDO A 1 315 16 EDO EDO . 
T 5 EDO A 1 316 19 EDO EDO . 
U 5 EDO A 1 317 20 EDO EDO . 
V 6 CL A 1 318 1 CL CL . 
W 6 CL A 1 319 2 CL CL . 
X 6 CL A 1 320 4 CL CL . 
Y 6 CL A 1 321 5 CL CL . 
Z 6 CL A 1 322 7 CL CL . 
AA 6 CL A 1 323 9 CL CL . 
BA 6 CL A 1 324 10 CL CL . 
CA 6 CL A 1 325 13 CL CL . 
DA 6 CL A 1 326 16 CL CL . 
EA 6 CL A 1 327 18 CL CL . 
FA 5 EDO B 1 301 4 EDO EDO . 
GA 5 EDO B 1 302 11 EDO EDO . 
HA 5 EDO B 1 303 12 EDO EDO . 
IA 4 GOL C 1 401 5 GOL GOL . 
JA 5 EDO C 1 402 1 EDO EDO . 
KA 5 EDO C 1 403 2 EDO EDO . 
LA 5 EDO C 1 404 7 EDO EDO . 
MA 5 EDO C 1 405 10 EDO EDO . 
NA 5 EDO C 1 406 14 EDO EDO . 
OA 5 EDO C 1 407 15 EDO EDO . 
PA 5 EDO C 1 408 17 EDO EDO . 
QA 5 EDO C 1 409 18 EDO EDO . 
RA 6 CL C 1 410 3 CL CL . 
SA 6 CL C 1 411 6 CL CL . 
TA 6 CL C 1 412 8 CL CL . 
UA 6 CL C 1 413 11 CL CL . 
VA 6 CL C 1 414 12 CL CL . 
WA 6 CL C 1 415 14 CL CL . 
XA 6 CL C 1 416 15 CL CL . 
YA 6 CL C 1 417 17 CL CL . 
ZA 6 CL C 1 418 19 CL CL . 
AB 7 HOH A 1 401 5 HOH HOH . 
AB 7 HOH A 2 402 17 HOH HOH . 
AB 7 HOH A 3 403 26 HOH HOH . 
AB 7 HOH A 4 404 12 HOH HOH . 
AB 7 HOH A 5 405 32 HOH HOH . 
AB 7 HOH A 6 406 24 HOH HOH . 
AB 7 HOH A 7 407 13 HOH HOH . 
AB 7 HOH A 8 408 11 HOH HOH . 
AB 7 HOH A 9 409 36 HOH HOH . 
AB 7 HOH A 10 410 60 HOH HOH . 
AB 7 HOH A 11 411 9 HOH HOH . 
AB 7 HOH A 12 412 35 HOH HOH . 
AB 7 HOH A 13 413 44 HOH HOH . 
AB 7 HOH A 14 414 69 HOH HOH . 
AB 7 HOH A 15 415 54 HOH HOH . 
AB 7 HOH A 16 416 20 HOH HOH . 
AB 7 HOH A 17 417 8 HOH HOH . 
AB 7 HOH A 18 418 34 HOH HOH . 
AB 7 HOH A 19 419 71 HOH HOH . 
AB 7 HOH A 20 420 67 HOH HOH . 
AB 7 HOH A 21 421 25 HOH HOH . 
AB 7 HOH A 22 422 63 HOH HOH . 
AB 7 HOH A 23 423 59 HOH HOH . 
AB 7 HOH A 24 424 3 HOH HOH . 
AB 7 HOH A 25 425 1 HOH HOH . 
AB 7 HOH A 26 426 7 HOH HOH . 
AB 7 HOH A 27 427 47 HOH HOH . 
AB 7 HOH A 28 428 42 HOH HOH . 
AB 7 HOH A 29 429 31 HOH HOH . 
AB 7 HOH A 30 430 57 HOH HOH . 
AB 7 HOH A 31 431 43 HOH HOH . 
AB 7 HOH A 32 432 4 HOH HOH . 
AB 7 HOH A 33 433 27 HOH HOH . 
AB 7 HOH A 34 434 10 HOH HOH . 
AB 7 HOH A 35 435 30 HOH HOH . 
AB 7 HOH A 36 436 46 HOH HOH . 
AB 7 HOH A 37 437 68 HOH HOH . 
AB 7 HOH A 38 438 6 HOH HOH . 
AB 7 HOH A 39 439 52 HOH HOH . 
AB 7 HOH A 40 440 23 HOH HOH . 
AB 7 HOH A 41 441 45 HOH HOH . 
AB 7 HOH A 42 442 53 HOH HOH . 
AB 7 HOH A 43 443 64 HOH HOH . 
AB 7 HOH A 44 444 33 HOH HOH . 
AB 7 HOH A 45 445 22 HOH HOH . 
AB 7 HOH A 46 446 66 HOH HOH . 
AB 7 HOH A 47 447 51 HOH HOH . 
AB 7 HOH A 48 448 58 HOH HOH . 
BB 7 HOH B 1 401 62 HOH HOH . 
BB 7 HOH B 2 402 28 HOH HOH . 
BB 7 HOH B 3 403 29 HOH HOH . 
BB 7 HOH B 4 404 55 HOH HOH . 
CB 7 HOH C 1 501 18 HOH HOH . 
CB 7 HOH C 2 502 38 HOH HOH . 
CB 7 HOH C 3 503 40 HOH HOH . 
CB 7 HOH C 4 504 70 HOH HOH . 
CB 7 HOH C 5 505 19 HOH HOH . 
CB 7 HOH C 6 506 2 HOH HOH . 
CB 7 HOH C 7 507 48 HOH HOH . 
CB 7 HOH C 8 508 16 HOH HOH . 
CB 7 HOH C 9 509 15 HOH HOH . 
CB 7 HOH C 10 510 56 HOH HOH . 
CB 7 HOH C 11 511 49 HOH HOH . 
CB 7 HOH C 12 512 61 HOH HOH . 
CB 7 HOH C 13 513 37 HOH HOH . 
CB 7 HOH C 14 514 14 HOH HOH . 
CB 7 HOH C 15 515 65 HOH HOH . 
CB 7 HOH C 16 516 39 HOH HOH . 
CB 7 HOH C 17 517 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . T 5 57.922 2.433 72.221 1 134.91 ? C1 EDO 316 A 1 
HETATM 2 O O1 EDO . . . T 5 59.309 2.178 72.194 1 132.04 ? O1 EDO 316 A 1 
HETATM 3 C C2 EDO . . . T 5 57.13 1.259 72.663 1 139.87 ? C2 EDO 316 A 1 
HETATM 4 O O2 EDO . . . T 5 57.631 0.656 73.842 1 139.05 ? O2 EDO 316 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#