data_7VE2 # _model_server_result.job_id YDrMn9G0IyR967J0y7_pCA _model_server_result.datetime_utc '2024-11-16 15:31:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ve2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7VE2 # _exptl.entry_id 7VE2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 628.801 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{1-BENZYL-4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-5-PHENYL-PENTYL}-3-METHYL-2-(2-OXO-TETRAHYDRO-PYRIMIDIN-1-YL)-BUTYRAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VE2 _cell.length_a 108.94 _cell.length_b 108.94 _cell.length_c 70.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VE2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 49 A CYS 49 1_555 A SG CYS 54 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 251 A CYS 251 1_555 A SG CYS 287 A CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? # _chem_comp.formula 'C37 H48 N4 O5' _chem_comp.formula_weight 628.801 _chem_comp.id AB1 _chem_comp.mon_nstd_flag . _chem_comp.name N-{1-BENZYL-4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-5-PHENYL-PENTYL}-3-METHYL-2-(2-OXO-TETRAHYDRO-PYRIMIDIN-1-YL)-BUTYRAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ABT-378;LOPINAVIR # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 AB1 sing 1 n n C1 C37 AB1 sing 2 n n C1 H2 AB1 sing 3 n n C1 H3 AB1 sing 4 n n C2 N1 AB1 sing 5 n n C2 C37 AB1 sing 6 n n C2 H4 AB1 sing 7 n n C2 H5 AB1 sing 8 n n N1 C3 AB1 sing 9 n n N1 C10 AB1 sing 10 n n C3 N2 AB1 sing 11 n n C3 O1 AB1 doub 12 n n N2 H8 AB1 sing 13 n n C4 C5 AB1 doub 14 n y C4 C9 AB1 sing 15 n y C4 C29 AB1 sing 16 n n C5 C6 AB1 sing 17 n y C5 H30 AB1 sing 18 n n C6 C7 AB1 doub 19 n y C6 H31 AB1 sing 20 n n C7 C8 AB1 sing 21 n y C7 H32 AB1 sing 22 n n C8 C9 AB1 doub 23 n y C8 H33 AB1 sing 24 n n C9 H34 AB1 sing 25 n n C10 C11 AB1 sing 26 n n C10 C13 AB1 sing 27 n n C10 H9 AB1 sing 28 n n C11 N3 AB1 sing 29 n n C11 O2 AB1 doub 30 n n N3 C12 AB1 sing 31 n n N3 H15 AB1 sing 32 n n C12 C22 AB1 sing 33 n n C12 C23 AB1 sing 34 n n C12 H16 AB1 sing 35 n n C13 C14 AB1 sing 36 n n C13 C15 AB1 sing 37 n n C13 H10 AB1 sing 38 n n C14 H11 AB1 sing 39 n n C14 H12 AB1 sing 40 n n C14 H47 AB1 sing 41 n n C15 H13 AB1 sing 42 n n C15 H14 AB1 sing 43 n n C15 H48 AB1 sing 44 n n C16 C17 AB1 doub 45 n y C16 C21 AB1 sing 46 n y C16 H20 AB1 sing 47 n n C17 C18 AB1 sing 48 n y C17 H21 AB1 sing 49 n n C18 C19 AB1 doub 50 n y C18 H22 AB1 sing 51 n n C19 C20 AB1 sing 52 n y C19 H23 AB1 sing 53 n n C20 C21 AB1 doub 54 n y C20 C22 AB1 sing 55 n n C21 H19 AB1 sing 56 n n C22 H17 AB1 sing 57 n n C22 H18 AB1 sing 58 n n C23 C24 AB1 sing 59 n n C23 H24 AB1 sing 60 n n C23 H25 AB1 sing 61 n n C24 C25 AB1 sing 62 n n C24 O4 AB1 sing 63 n n C24 H26 AB1 sing 64 n n C25 N4 AB1 sing 65 n n C25 C29 AB1 sing 66 n n C25 H27 AB1 sing 67 n n N4 C26 AB1 sing 68 n n N4 H35 AB1 sing 69 n n C26 C27 AB1 sing 70 n n C26 O5 AB1 doub 71 n n C27 O3 AB1 sing 72 n n C27 H36 AB1 sing 73 n n C27 H37 AB1 sing 74 n n O3 C28 AB1 sing 75 n n C28 C30 AB1 doub 76 n y C28 C34 AB1 sing 77 n y O4 H1 AB1 sing 78 n n C29 H28 AB1 sing 79 n n C29 H29 AB1 sing 80 n n C30 C31 AB1 sing 81 n y C30 C36 AB1 sing 82 n n C31 C32 AB1 doub 83 n y C31 H41 AB1 sing 84 n n C32 C33 AB1 sing 85 n y C32 H42 AB1 sing 86 n n C33 C34 AB1 doub 87 n y C33 H43 AB1 sing 88 n n C34 C35 AB1 sing 89 n n C35 H44 AB1 sing 90 n n C35 H45 AB1 sing 91 n n C35 H46 AB1 sing 92 n n C36 H38 AB1 sing 93 n n C36 H39 AB1 sing 94 n n C36 H40 AB1 sing 95 n n C37 H6 AB1 sing 96 n n C37 H7 AB1 sing 97 n n # _atom_sites.entry_id 7VE2 _atom_sites.fract_transf_matrix[1][1] 0.009179 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AB1 A 1 401 1 AB1 AB1 . C 3 CPS A 1 402 401 CPS CPS . D 3 CPS A 1 403 701 CPS CPS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AB1 . . . B 2 -24.478 -13.843 19.479 1 81.61 ? C1 AB1 401 A 1 HETATM 2 C C2 AB1 . . . B 2 -23.589 -14.998 17.479 1 78.08 ? C2 AB1 401 A 1 HETATM 3 N N1 AB1 . . . B 2 -24.491 -14.142 16.685 1 79.3 ? N1 AB1 401 A 1 HETATM 4 C C3 AB1 . . . B 2 -25.144 -13.085 17.221 1 79 ? C3 AB1 401 A 1 HETATM 5 N N2 AB1 . . . B 2 -25.299 -13.07 18.557 1 79.4 ? N2 AB1 401 A 1 HETATM 6 C C4 AB1 . . . B 2 -25.392 -16.585 9.561 1 93.98 ? C4 AB1 401 A 1 HETATM 7 C C5 AB1 . . . B 2 -25.654 -17.353 8.438 1 94.99 ? C5 AB1 401 A 1 HETATM 8 C C6 AB1 . . . B 2 -24.623 -17.8 7.627 1 94.07 ? C6 AB1 401 A 1 HETATM 9 C C7 AB1 . . . B 2 -23.32 -17.49 7.937 1 93.22 ? C7 AB1 401 A 1 HETATM 10 C C8 AB1 . . . B 2 -23.044 -16.734 9.05 1 91.91 ? C8 AB1 401 A 1 HETATM 11 C C9 AB1 . . . B 2 -24.073 -16.288 9.863 1 90.78 ? C9 AB1 401 A 1 HETATM 12 O O1 AB1 . . . B 2 -25.614 -12.196 16.498 1 79.72 ? O1 AB1 401 A 1 HETATM 13 C C10 AB1 . . . B 2 -24.679 -14.441 15.259 1 87.18 ? C10 AB1 401 A 1 HETATM 14 C C11 AB1 . . . B 2 -24.842 -15.945 15.031 1 93.59 ? C11 AB1 401 A 1 HETATM 15 N N3 AB1 . . . B 2 -26.091 -16.397 15.185 1 96.75 ? N3 AB1 401 A 1 HETATM 16 C C12 AB1 . . . B 2 -26.576 -17.664 14.657 1 95.83 ? C12 AB1 401 A 1 HETATM 17 C C13 AB1 . . . B 2 -23.593 -13.791 14.375 1 88.7 ? C13 AB1 401 A 1 HETATM 18 C C14 AB1 . . . B 2 -22.191 -14.058 14.905 1 91.27 ? C14 AB1 401 A 1 HETATM 19 C C15 AB1 . . . B 2 -23.711 -14.238 12.922 1 86.54 ? C15 AB1 401 A 1 HETATM 20 O O2 AB1 . . . B 2 -23.888 -16.671 14.758 1 97.58 ? O2 AB1 401 A 1 HETATM 21 C C16 AB1 . . . B 2 -26.335 -18.098 19.477 1 92.31 ? C16 AB1 401 A 1 HETATM 22 C C17 AB1 . . . B 2 -27.265 -17.111 19.711 1 93.46 ? C17 AB1 401 A 1 HETATM 23 C C18 AB1 . . . B 2 -28.032 -16.635 18.673 1 93.41 ? C18 AB1 401 A 1 HETATM 24 C C19 AB1 . . . B 2 -27.879 -17.153 17.396 1 89.17 ? C19 AB1 401 A 1 HETATM 25 C C20 AB1 . . . B 2 -26.94 -18.14 17.144 1 89.81 ? C20 AB1 401 A 1 HETATM 26 C C21 AB1 . . . B 2 -26.174 -18.609 18.199 1 89.24 ? C21 AB1 401 A 1 HETATM 27 C C22 AB1 . . . B 2 -26.766 -18.712 15.759 1 94.11 ? C22 AB1 401 A 1 HETATM 28 C C23 AB1 . . . B 2 -27.86 -17.436 13.862 1 94.94 ? C23 AB1 401 A 1 HETATM 29 C C24 AB1 . . . B 2 -27.73 -16.502 12.679 1 95.1 ? C24 AB1 401 A 1 HETATM 30 C C25 AB1 . . . B 2 -26.41 -16.62 11.89 1 100.16 ? C25 AB1 401 A 1 HETATM 31 N N4 AB1 . . . B 2 -25.912 -17.99 11.88 1 105.47 ? N4 AB1 401 A 1 HETATM 32 C C26 AB1 . . . B 2 -26.512 -19.003 11.257 1 111.15 ? C26 AB1 401 A 1 HETATM 33 C C27 AB1 . . . B 2 -25.611 -20.052 10.671 1 113.61 ? C27 AB1 401 A 1 HETATM 34 O O3 AB1 . . . B 2 -26.291 -21.289 10.474 1 118.19 ? O3 AB1 401 A 1 HETATM 35 C C28 AB1 . . . B 2 -26.18 -21.872 9.23 1 122.15 ? C28 AB1 401 A 1 HETATM 36 O O4 AB1 . . . B 2 -28.829 -16.759 11.819 1 96.03 ? O4 AB1 401 A 1 HETATM 37 C C29 AB1 . . . B 2 -26.519 -16.104 10.447 1 98.06 ? C29 AB1 401 A 1 HETATM 38 O O5 AB1 . . . B 2 -27.727 -19.121 11.132 1 120.95 ? O5 AB1 401 A 1 HETATM 39 C C30 AB1 . . . B 2 -24.935 -22.337 8.791 1 125.06 ? C30 AB1 401 A 1 HETATM 40 C C31 AB1 . . . B 2 -24.881 -22.933 7.535 1 121.82 ? C31 AB1 401 A 1 HETATM 41 C C32 AB1 . . . B 2 -26.01 -23.07 6.755 1 121.76 ? C32 AB1 401 A 1 HETATM 42 C C33 AB1 . . . B 2 -27.224 -22.609 7.219 1 119.59 ? C33 AB1 401 A 1 HETATM 43 C C34 AB1 . . . B 2 -27.34 -22.004 8.465 1 117.76 ? C34 AB1 401 A 1 HETATM 44 C C35 AB1 . . . B 2 -28.665 -21.509 8.967 1 116.95 ? C35 AB1 401 A 1 HETATM 45 C C36 AB1 . . . B 2 -23.692 -22.202 9.625 1 124.1 ? C36 AB1 401 A 1 HETATM 46 C C37 AB1 . . . B 2 -24.1 -15.172 18.877 1 81.38 ? C37 AB1 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 46 #