data_7VE3 # _model_server_result.job_id L3wGjNOtwewJ_RdLrg2YVA _model_server_result.datetime_utc '2025-01-10 19:52:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ve3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":619}' # _entry.id 7VE3 # _exptl.entry_id 7VE3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 143.912 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'hypoiodous acid' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.86 _cell.angle_gamma 90 _cell.entry_id 7VE3 _cell.length_a 53.942 _cell.length_b 80.179 _cell.length_c 76.122 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VE3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 M N N ? 7 N N N ? 7 O N N ? 7 P N N ? 7 Q N N ? 7 R N N ? 7 S N N ? 7 T N N ? 7 U N N ? 7 V N N ? 7 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 167 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 15 A CYS 15 1_555 A SG CYS 28 A CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 A SG CYS 129 A CYS 129 1_555 A SG CYS 139 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 A SG CYS 133 A CYS 133 1_555 A SG CYS 157 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 A SG CYS 237 A CYS 237 1_555 A SG CYS 248 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf6 A SG CYS 456 A CYS 456 1_555 A SG CYS 513 A CYS 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf7 A SG CYS 554 A CYS 554 1_555 A SG CYS 579 A CYS 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? covale ? covale1 A OG SER 198 A SER 198 1_555 H I IOD . A IOD 607 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.148 ? covale ? covale2 A ND2 ASN 241 A ASN 241 1_555 E C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale3 A ND2 ASN 332 A ASN 332 1_555 D C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? metalc ? metalc1 A O ASP 110 A ASP 110 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc2 A OD1 ASP 110 A ASP 110 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc3 A O THR 184 A THR 184 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc4 A OG1 THR 184 A THR 184 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc5 A O PHE 186 A PHE 186 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc6 A OD1 ASP 188 A ASP 188 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc7 A OG SER 190 A SER 190 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc8 A NE2 HIS 351 A HIS 351 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? # _chem_comp.formula 'H I O' _chem_comp.formula_weight 143.912 _chem_comp.id 61D _chem_comp.mon_nstd_flag . _chem_comp.name 'hypoiodous acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag I O 61D sing 1 n n O H1 61D sing 2 n n # _atom_sites.entry_id 7VE3 _atom_sites.fract_transf_matrix[1][1] 0.018538 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004232 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 601 HEM HEM . C 3 CA A 1 602 602 CA CA . D 4 NAG A 1 603 603 NAG NAG . E 4 NAG A 1 604 701 NAG NAG . F 5 IOD A 1 605 3 IOD IOD . G 5 IOD A 1 606 4 IOD IOD . H 5 IOD A 1 607 5 IOD IOD . I 5 IOD A 1 608 602 IOD IOD . J 5 IOD A 1 609 605 IOD IOD . K 5 IOD A 1 610 608 IOD IOD . L 6 SO4 A 1 611 1 SO4 SO4 . M 7 61D A 1 612 1 61D HOI . N 7 61D A 1 613 2 61D HOI . O 7 61D A 1 614 4 61D HOI . P 7 61D A 1 615 3 61D HOI . Q 7 61D A 1 616 5 61D HOI . R 7 61D A 1 617 6 61D HOI . S 7 61D A 1 618 7 61D HOI . T 7 61D A 1 619 8 61D HOI . U 7 61D A 1 620 9 61D HOI . V 7 61D A 1 621 10 61D HOI . W 7 61D A 1 622 11 61D HOI . X 8 HOH A 1 701 15 HOH HOH . X 8 HOH A 2 702 731 HOH HOH . X 8 HOH A 3 703 26 HOH HOH . X 8 HOH A 4 704 48 HOH HOH . X 8 HOH A 5 705 32 HOH HOH . X 8 HOH A 6 706 788 HOH HOH . X 8 HOH A 7 707 49 HOH HOH . X 8 HOH A 8 708 786 HOH HOH . X 8 HOH A 9 709 741 HOH HOH . X 8 HOH A 10 710 6 HOH HOH . X 8 HOH A 11 711 799 HOH HOH . X 8 HOH A 12 712 30 HOH HOH . X 8 HOH A 13 713 701 HOH HOH . X 8 HOH A 14 714 18 HOH HOH . X 8 HOH A 15 715 769 HOH HOH . X 8 HOH A 16 716 743 HOH HOH . X 8 HOH A 17 717 7 HOH HOH . X 8 HOH A 18 718 28 HOH HOH . X 8 HOH A 19 719 716 HOH HOH . X 8 HOH A 20 720 3 HOH HOH . X 8 HOH A 21 721 41 HOH HOH . X 8 HOH A 22 722 23 HOH HOH . X 8 HOH A 23 723 793 HOH HOH . X 8 HOH A 24 724 804 HOH HOH . X 8 HOH A 25 725 812 HOH HOH . X 8 HOH A 26 726 11 HOH HOH . X 8 HOH A 27 727 811 HOH HOH . X 8 HOH A 28 728 814 HOH HOH . X 8 HOH A 29 729 14 HOH HOH . X 8 HOH A 30 730 34 HOH HOH . X 8 HOH A 31 731 779 HOH HOH . X 8 HOH A 32 732 38 HOH HOH . X 8 HOH A 33 733 791 HOH HOH . X 8 HOH A 34 734 25 HOH HOH . X 8 HOH A 35 735 763 HOH HOH . X 8 HOH A 36 736 721 HOH HOH . X 8 HOH A 37 737 740 HOH HOH . X 8 HOH A 38 738 774 HOH HOH . X 8 HOH A 39 739 818 HOH HOH . X 8 HOH A 40 740 10 HOH HOH . X 8 HOH A 41 741 762 HOH HOH . X 8 HOH A 42 742 744 HOH HOH . X 8 HOH A 43 743 726 HOH HOH . X 8 HOH A 44 744 738 HOH HOH . X 8 HOH A 45 745 718 HOH HOH . X 8 HOH A 46 746 719 HOH HOH . X 8 HOH A 47 747 44 HOH HOH . X 8 HOH A 48 748 9 HOH HOH . X 8 HOH A 49 749 43 HOH HOH . X 8 HOH A 50 750 792 HOH HOH . X 8 HOH A 51 751 723 HOH HOH . X 8 HOH A 52 752 17 HOH HOH . X 8 HOH A 53 753 816 HOH HOH . X 8 HOH A 54 754 735 HOH HOH . X 8 HOH A 55 755 19 HOH HOH . X 8 HOH A 56 756 46 HOH HOH . X 8 HOH A 57 757 710 HOH HOH . X 8 HOH A 58 758 813 HOH HOH . X 8 HOH A 59 759 808 HOH HOH . X 8 HOH A 60 760 720 HOH HOH . X 8 HOH A 61 761 33 HOH HOH . X 8 HOH A 62 762 714 HOH HOH . X 8 HOH A 63 763 715 HOH HOH . X 8 HOH A 64 764 47 HOH HOH . X 8 HOH A 65 765 800 HOH HOH . X 8 HOH A 66 766 759 HOH HOH . X 8 HOH A 67 767 40 HOH HOH . X 8 HOH A 68 768 778 HOH HOH . X 8 HOH A 69 769 736 HOH HOH . X 8 HOH A 70 770 5 HOH HOH . X 8 HOH A 71 771 750 HOH HOH . X 8 HOH A 72 772 780 HOH HOH . X 8 HOH A 73 773 16 HOH HOH . X 8 HOH A 74 774 711 HOH HOH . X 8 HOH A 75 775 705 HOH HOH . X 8 HOH A 76 776 730 HOH HOH . X 8 HOH A 77 777 767 HOH HOH . X 8 HOH A 78 778 819 HOH HOH . X 8 HOH A 79 779 790 HOH HOH . X 8 HOH A 80 780 42 HOH HOH . X 8 HOH A 81 781 761 HOH HOH . X 8 HOH A 82 782 747 HOH HOH . X 8 HOH A 83 783 727 HOH HOH . X 8 HOH A 84 784 702 HOH HOH . X 8 HOH A 85 785 815 HOH HOH . X 8 HOH A 86 786 722 HOH HOH . X 8 HOH A 87 787 797 HOH HOH . X 8 HOH A 88 788 766 HOH HOH . X 8 HOH A 89 789 706 HOH HOH . X 8 HOH A 90 790 13 HOH HOH . X 8 HOH A 91 791 745 HOH HOH . X 8 HOH A 92 792 724 HOH HOH . X 8 HOH A 93 793 29 HOH HOH . X 8 HOH A 94 794 20 HOH HOH . X 8 HOH A 95 795 704 HOH HOH . X 8 HOH A 96 796 22 HOH HOH . X 8 HOH A 97 797 796 HOH HOH . X 8 HOH A 98 798 713 HOH HOH . X 8 HOH A 99 799 739 HOH HOH . X 8 HOH A 100 800 823 HOH HOH . X 8 HOH A 101 801 773 HOH HOH . X 8 HOH A 102 802 803 HOH HOH . X 8 HOH A 103 803 39 HOH HOH . X 8 HOH A 104 804 12 HOH HOH . X 8 HOH A 105 805 725 HOH HOH . X 8 HOH A 106 806 756 HOH HOH . X 8 HOH A 107 807 703 HOH HOH . X 8 HOH A 108 808 820 HOH HOH . X 8 HOH A 109 809 771 HOH HOH . X 8 HOH A 110 810 783 HOH HOH . X 8 HOH A 111 811 733 HOH HOH . X 8 HOH A 112 812 754 HOH HOH . X 8 HOH A 113 813 36 HOH HOH . X 8 HOH A 114 814 777 HOH HOH . X 8 HOH A 115 815 1 HOH HOH . X 8 HOH A 116 816 708 HOH HOH . X 8 HOH A 117 817 734 HOH HOH . X 8 HOH A 118 818 782 HOH HOH . X 8 HOH A 119 819 817 HOH HOH . X 8 HOH A 120 820 35 HOH HOH . X 8 HOH A 121 821 806 HOH HOH . X 8 HOH A 122 822 37 HOH HOH . X 8 HOH A 123 823 748 HOH HOH . X 8 HOH A 124 824 8 HOH HOH . X 8 HOH A 125 825 772 HOH HOH . X 8 HOH A 126 826 798 HOH HOH . X 8 HOH A 127 827 21 HOH HOH . X 8 HOH A 128 828 794 HOH HOH . X 8 HOH A 129 829 802 HOH HOH . X 8 HOH A 130 830 785 HOH HOH . X 8 HOH A 131 831 729 HOH HOH . X 8 HOH A 132 832 742 HOH HOH . X 8 HOH A 133 833 749 HOH HOH . X 8 HOH A 134 834 737 HOH HOH . X 8 HOH A 135 835 752 HOH HOH . X 8 HOH A 136 836 753 HOH HOH . X 8 HOH A 137 837 709 HOH HOH . X 8 HOH A 138 838 755 HOH HOH . X 8 HOH A 139 839 45 HOH HOH . X 8 HOH A 140 840 765 HOH HOH . X 8 HOH A 141 841 805 HOH HOH . X 8 HOH A 142 842 757 HOH HOH . X 8 HOH A 143 843 822 HOH HOH . X 8 HOH A 144 844 807 HOH HOH . X 8 HOH A 145 845 728 HOH HOH . X 8 HOH A 146 846 810 HOH HOH . X 8 HOH A 147 847 789 HOH HOH . X 8 HOH A 148 848 751 HOH HOH . X 8 HOH A 149 849 31 HOH HOH . X 8 HOH A 150 850 784 HOH HOH . X 8 HOH A 151 851 795 HOH HOH . X 8 HOH A 152 852 707 HOH HOH . X 8 HOH A 153 853 776 HOH HOH . X 8 HOH A 154 854 775 HOH HOH . X 8 HOH A 155 855 787 HOH HOH . X 8 HOH A 156 856 768 HOH HOH . X 8 HOH A 157 857 746 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 I I 61D . . . T 7 36.412 -15.959 31.497 0.46 70.34 0 I 61D 619 A 1 HETATM 2 O O 61D . . . T 7 35.566 -15.688 29.562 0.46 57.14 0 O 61D 619 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 2 #