data_7VEK # _model_server_result.job_id LjTgEoonhFaeSwWA-ywz8g _model_server_result.datetime_utc '2024-11-08 03:48:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vek # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 7VEK # _exptl.entry_id 7VEK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.315 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VEK _cell.length_a 94.276 _cell.length_b 103.022 _cell.length_c 109.648 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VEK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 258 A GLU 238 1_555 D K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc2 C OAM O4B . A O4B 501 1_555 D K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc3 C OAO O4B . A O4B 501 1_555 D K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc4 C OAQ O4B . A O4B 501 1_555 D K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? metalc ? metalc5 C OAR O4B . A O4B 501 1_555 D K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc6 C OAP O4B . A O4B 501 1_555 D K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc7 C OAN O4B . A O4B 501 1_555 D K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.198 ? metalc ? metalc8 D K K . A K 502 1_555 B O GLU 258 B GLU 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? # _chem_comp.formula 'C12 H24 O6' _chem_comp.formula_weight 264.315 _chem_comp.id O4B _chem_comp.mon_nstd_flag . _chem_comp.name 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA OAM O4B sing 284 n n CAA CAB O4B sing 285 n n OAM CAC O4B sing 286 n n CAC CAD O4B sing 287 n n CAD OAO O4B sing 288 n n OAO CAG O4B sing 289 n n CAG CAH O4B sing 290 n n CAH OAQ O4B sing 291 n n OAQ CAK O4B sing 292 n n CAK CAL O4B sing 293 n n CAL OAR O4B sing 294 n n OAR CAJ O4B sing 295 n n CAJ CAI O4B sing 296 n n CAI OAP O4B sing 297 n n OAP CAF O4B sing 298 n n CAF CAE O4B sing 299 n n CAE OAN O4B sing 300 n n OAN CAB O4B sing 301 n n CAA HAA1 O4B sing 302 n n CAA HAA2 O4B sing 303 n n CAB HAB1 O4B sing 304 n n CAB HAB2 O4B sing 305 n n CAC HAC1 O4B sing 306 n n CAC HAC2 O4B sing 307 n n CAD HAD1 O4B sing 308 n n CAD HAD2 O4B sing 309 n n CAG HAG1 O4B sing 310 n n CAG HAG2 O4B sing 311 n n CAH HAH1 O4B sing 312 n n CAH HAH2 O4B sing 313 n n CAK HAK1 O4B sing 314 n n CAK HAK2 O4B sing 315 n n CAL HAL1 O4B sing 316 n n CAL HAL2 O4B sing 317 n n CAJ HAJ1 O4B sing 318 n n CAJ HAJ2 O4B sing 319 n n CAI HAI1 O4B sing 320 n n CAI HAI2 O4B sing 321 n n CAF HAF1 O4B sing 322 n n CAF HAF2 O4B sing 323 n n CAE HAE1 O4B sing 324 n n CAE HAE2 O4B sing 325 n n # _atom_sites.entry_id 7VEK _atom_sites.fract_transf_matrix[1][1] 0.010607 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009707 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 O4B A 1 501 1 O4B O4B . D 3 K A 1 502 1 K K . E 4 U2F A 1 503 1 U2F U2F . F 5 4DY B 1 501 501 4DY 4DY . G 4 U2F B 1 502 2 U2F U2F . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA O4B . . . C 2 5.233 15.289 -41.458 1 46.54 ? CAA O4B 501 A 1 HETATM 2 O OAM O4B . . . C 2 5.092 13.932 -41.148 1 49.61 ? OAM O4B 501 A 1 HETATM 3 C CAC O4B . . . C 2 4.557 13.677 -39.879 1 40.1 ? CAC O4B 501 A 1 HETATM 4 C CAD O4B . . . C 2 4.536 12.168 -39.627 1 39 ? CAD O4B 501 A 1 HETATM 5 O OAO O4B . . . C 2 5.826 11.64 -39.762 1 41.62 ? OAO O4B 501 A 1 HETATM 6 C CAG O4B . . . C 2 5.811 10.255 -39.569 1 39.41 ? CAG O4B 501 A 1 HETATM 7 C CAH O4B . . . C 2 7.225 9.692 -39.705 1 37.82 ? CAH O4B 501 A 1 HETATM 8 O OAQ O4B . . . C 2 7.641 9.729 -41.042 1 39.5 ? OAQ O4B 501 A 1 HETATM 9 C CAK O4B . . . C 2 9.027 9.531 -41.128 1 40.11 ? CAK O4B 501 A 1 HETATM 10 C CAL O4B . . . C 2 9.504 9.611 -42.581 1 39.17 ? CAL O4B 501 A 1 HETATM 11 O OAR O4B . . . C 2 9.178 10.856 -43.138 1 50.88 ? OAR O4B 501 A 1 HETATM 12 C CAJ O4B . . . C 2 10.323 11.655 -43.209 1 39.27 ? CAJ O4B 501 A 1 HETATM 13 C CAI O4B . . . C 2 10.114 12.854 -44.135 1 46.89 ? CAI O4B 501 A 1 HETATM 14 O OAP O4B . . . C 2 8.886 13.474 -43.88 1 52.49 ? OAP O4B 501 A 1 HETATM 15 C CAF O4B . . . C 2 8.919 14.799 -44.334 1 44.67 ? CAF O4B 501 A 1 HETATM 16 C CAE O4B . . . C 2 7.524 15.422 -44.287 1 37.52 ? CAE O4B 501 A 1 HETATM 17 O OAN O4B . . . C 2 7.098 15.545 -42.96 1 39.24 ? OAN O4B 501 A 1 HETATM 18 C CAB O4B . . . C 2 5.705 15.438 -42.903 1 40.95 ? CAB O4B 501 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #