data_7VEL # _model_server_result.job_id OFgYwfzBxw0w2OeV27GuyQ _model_server_result.datetime_utc '2024-11-24 14:00:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vel # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 7VEL # _exptl.entry_id 7VEL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VEL _cell.length_a 94.218 _cell.length_b 103.851 _cell.length_c 110.009 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VEL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,H 1 1 B,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 258 A GLU 238 1_555 E K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc2 D OAM O4B . A O4B 602 1_555 E K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc3 D OAO O4B . A O4B 602 1_555 E K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc4 D OAQ O4B . A O4B 602 1_555 E K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc5 D OAR O4B . A O4B 602 1_555 E K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc6 D OAP O4B . A O4B 602 1_555 E K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc7 D OAN O4B . A O4B 602 1_555 E K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc8 E K K . A K 603 1_555 B O GLU 258 B GLU 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7VEL _atom_sites.fract_transf_matrix[1][1] 0.010614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009629 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00909 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 601 601 EDO EDO . D 3 O4B A 1 602 1 O4B O4B . E 4 K A 1 603 1 K K . F 5 U2F A 1 604 1 U2F U2F . G 5 U2F B 1 501 2 U2F U2F . H 6 HOH A 1 701 54 HOH HOH . H 6 HOH A 2 702 145 HOH HOH . H 6 HOH A 3 703 51 HOH HOH . H 6 HOH A 4 704 10 HOH HOH . H 6 HOH A 5 705 182 HOH HOH . H 6 HOH A 6 706 35 HOH HOH . H 6 HOH A 7 707 73 HOH HOH . H 6 HOH A 8 708 124 HOH HOH . H 6 HOH A 9 709 7 HOH HOH . H 6 HOH A 10 710 184 HOH HOH . H 6 HOH A 11 711 196 HOH HOH . H 6 HOH A 12 712 32 HOH HOH . H 6 HOH A 13 713 120 HOH HOH . H 6 HOH A 14 714 25 HOH HOH . H 6 HOH A 15 715 144 HOH HOH . H 6 HOH A 16 716 71 HOH HOH . H 6 HOH A 17 717 79 HOH HOH . H 6 HOH A 18 718 110 HOH HOH . H 6 HOH A 19 719 15 HOH HOH . H 6 HOH A 20 720 173 HOH HOH . H 6 HOH A 21 721 34 HOH HOH . H 6 HOH A 22 722 4 HOH HOH . H 6 HOH A 23 723 133 HOH HOH . H 6 HOH A 24 724 9 HOH HOH . H 6 HOH A 25 725 6 HOH HOH . H 6 HOH A 26 726 66 HOH HOH . H 6 HOH A 27 727 172 HOH HOH . H 6 HOH A 28 728 40 HOH HOH . H 6 HOH A 29 729 146 HOH HOH . H 6 HOH A 30 730 97 HOH HOH . H 6 HOH A 31 731 46 HOH HOH . H 6 HOH A 32 732 101 HOH HOH . H 6 HOH A 33 733 169 HOH HOH . H 6 HOH A 34 734 59 HOH HOH . H 6 HOH A 35 735 69 HOH HOH . H 6 HOH A 36 736 160 HOH HOH . H 6 HOH A 37 737 42 HOH HOH . H 6 HOH A 38 738 62 HOH HOH . H 6 HOH A 39 739 27 HOH HOH . H 6 HOH A 40 740 103 HOH HOH . H 6 HOH A 41 741 147 HOH HOH . H 6 HOH A 42 742 14 HOH HOH . H 6 HOH A 43 743 22 HOH HOH . H 6 HOH A 44 744 26 HOH HOH . H 6 HOH A 45 745 157 HOH HOH . H 6 HOH A 46 746 70 HOH HOH . H 6 HOH A 47 747 21 HOH HOH . H 6 HOH A 48 748 131 HOH HOH . H 6 HOH A 49 749 86 HOH HOH . H 6 HOH A 50 750 39 HOH HOH . H 6 HOH A 51 751 80 HOH HOH . H 6 HOH A 52 752 180 HOH HOH . H 6 HOH A 53 753 188 HOH HOH . H 6 HOH A 54 754 31 HOH HOH . H 6 HOH A 55 755 24 HOH HOH . H 6 HOH A 56 756 186 HOH HOH . H 6 HOH A 57 757 23 HOH HOH . H 6 HOH A 58 758 179 HOH HOH . H 6 HOH A 59 759 67 HOH HOH . H 6 HOH A 60 760 72 HOH HOH . H 6 HOH A 61 761 29 HOH HOH . H 6 HOH A 62 762 88 HOH HOH . H 6 HOH A 63 763 151 HOH HOH . H 6 HOH A 64 764 195 HOH HOH . H 6 HOH A 65 765 109 HOH HOH . H 6 HOH A 66 766 115 HOH HOH . H 6 HOH A 67 767 123 HOH HOH . I 6 HOH B 1 601 113 HOH HOH . I 6 HOH B 2 602 61 HOH HOH . I 6 HOH B 3 603 85 HOH HOH . I 6 HOH B 4 604 122 HOH HOH . I 6 HOH B 5 605 55 HOH HOH . I 6 HOH B 6 606 127 HOH HOH . I 6 HOH B 7 607 41 HOH HOH . I 6 HOH B 8 608 63 HOH HOH . I 6 HOH B 9 609 75 HOH HOH . I 6 HOH B 10 610 8 HOH HOH . I 6 HOH B 11 611 139 HOH HOH . I 6 HOH B 12 612 74 HOH HOH . I 6 HOH B 13 613 44 HOH HOH . I 6 HOH B 14 614 37 HOH HOH . I 6 HOH B 15 615 11 HOH HOH . I 6 HOH B 16 616 96 HOH HOH . I 6 HOH B 17 617 65 HOH HOH . I 6 HOH B 18 618 116 HOH HOH . I 6 HOH B 19 619 64 HOH HOH . I 6 HOH B 20 620 111 HOH HOH . I 6 HOH B 21 621 49 HOH HOH . I 6 HOH B 22 622 166 HOH HOH . I 6 HOH B 23 623 190 HOH HOH . I 6 HOH B 24 624 58 HOH HOH . I 6 HOH B 25 625 3 HOH HOH . I 6 HOH B 26 626 100 HOH HOH . I 6 HOH B 27 627 17 HOH HOH . I 6 HOH B 28 628 48 HOH HOH . I 6 HOH B 29 629 43 HOH HOH . I 6 HOH B 30 630 81 HOH HOH . I 6 HOH B 31 631 78 HOH HOH . I 6 HOH B 32 632 1 HOH HOH . I 6 HOH B 33 633 174 HOH HOH . I 6 HOH B 34 634 168 HOH HOH . I 6 HOH B 35 635 56 HOH HOH . I 6 HOH B 36 636 83 HOH HOH . I 6 HOH B 37 637 177 HOH HOH . I 6 HOH B 38 638 84 HOH HOH . I 6 HOH B 39 639 28 HOH HOH . I 6 HOH B 40 640 93 HOH HOH . I 6 HOH B 41 641 77 HOH HOH . I 6 HOH B 42 642 176 HOH HOH . I 6 HOH B 43 643 16 HOH HOH . I 6 HOH B 44 644 82 HOH HOH . I 6 HOH B 45 645 95 HOH HOH . I 6 HOH B 46 646 167 HOH HOH . I 6 HOH B 47 647 143 HOH HOH . I 6 HOH B 48 648 91 HOH HOH . I 6 HOH B 49 649 33 HOH HOH . I 6 HOH B 50 650 47 HOH HOH . I 6 HOH B 51 651 156 HOH HOH . I 6 HOH B 52 652 12 HOH HOH . I 6 HOH B 53 653 117 HOH HOH . I 6 HOH B 54 654 94 HOH HOH . I 6 HOH B 55 655 126 HOH HOH . I 6 HOH B 56 656 104 HOH HOH . I 6 HOH B 57 657 13 HOH HOH . I 6 HOH B 58 658 98 HOH HOH . I 6 HOH B 59 659 155 HOH HOH . I 6 HOH B 60 660 18 HOH HOH . I 6 HOH B 61 661 36 HOH HOH . I 6 HOH B 62 662 92 HOH HOH . I 6 HOH B 63 663 132 HOH HOH . I 6 HOH B 64 664 19 HOH HOH . I 6 HOH B 65 665 137 HOH HOH . I 6 HOH B 66 666 90 HOH HOH . I 6 HOH B 67 667 5 HOH HOH . I 6 HOH B 68 668 138 HOH HOH . I 6 HOH B 69 669 118 HOH HOH . I 6 HOH B 70 670 38 HOH HOH . I 6 HOH B 71 671 194 HOH HOH . I 6 HOH B 72 672 136 HOH HOH . I 6 HOH B 73 673 162 HOH HOH . I 6 HOH B 74 674 60 HOH HOH . I 6 HOH B 75 675 102 HOH HOH . I 6 HOH B 76 676 45 HOH HOH . I 6 HOH B 77 677 53 HOH HOH . I 6 HOH B 78 678 89 HOH HOH . I 6 HOH B 79 679 171 HOH HOH . I 6 HOH B 80 680 68 HOH HOH . I 6 HOH B 81 681 20 HOH HOH . I 6 HOH B 82 682 76 HOH HOH . I 6 HOH B 83 683 130 HOH HOH . I 6 HOH B 84 684 50 HOH HOH . I 6 HOH B 85 685 99 HOH HOH . I 6 HOH B 86 686 30 HOH HOH . I 6 HOH B 87 687 150 HOH HOH . I 6 HOH B 88 688 181 HOH HOH . I 6 HOH B 89 689 125 HOH HOH . I 6 HOH B 90 690 192 HOH HOH . I 6 HOH B 91 691 87 HOH HOH . I 6 HOH B 92 692 106 HOH HOH . I 6 HOH B 93 693 57 HOH HOH . I 6 HOH B 94 694 153 HOH HOH . I 6 HOH B 95 695 105 HOH HOH . I 6 HOH B 96 696 164 HOH HOH . I 6 HOH B 97 697 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 -15.676 0.625 -40.209 1 64.21 ? C1 EDO 601 A 1 HETATM 2 O O1 EDO . . . C 2 -15.664 2.058 -40.253 1 58.7 ? O1 EDO 601 A 1 HETATM 3 C C2 EDO . . . C 2 -16.578 0.055 -41.304 1 49.66 ? C2 EDO 601 A 1 HETATM 4 O O2 EDO . . . C 2 -17.948 0.388 -41.042 1 68.71 ? O2 EDO 601 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #