data_7VEZ
#
_model_server_result.job_id            -MFcdc-D34-cNDutFZJoIA 
_model_server_result.datetime_utc      '2024-11-26 12:16:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vez 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":501}' 
#
_entry.id    7VEZ 
#
_exptl.entry_id    7VEZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              272.253 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NARINGENIN 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.94 
_cell.angle_gamma         90 
_cell.entry_id            7VEZ 
_cell.length_a            72.259 
_cell.length_b            82.289 
_cell.length_c            134.312 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VEZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,H,I,L 1 1 
B,C,F,G,J,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C15 H12 O5' 
_chem_comp.formula_weight    272.253 
_chem_comp.id                NAR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NARINGENIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAR doub 237 n y 
C1 C6 NAR sing 238 n y 
C1 H11 NAR sing 239 n n 
C2 C3 NAR sing 240 n y 
C2 O4 NAR sing 241 n n 
C3 C4 NAR doub 242 n y 
C3 H31 NAR sing 243 n n 
C4 C5 NAR sing 244 n y 
C4 O5 NAR sing 245 n n 
C5 C6 NAR doub 246 n y 
C5 C7 NAR sing 247 n n 
C6 O1 NAR sing 248 n n 
C7 C8 NAR sing 249 n n 
C7 O2 NAR doub 250 n n 
C8 C9 NAR sing 251 n n 
C8 H81 NAR sing 252 n n 
C8 H82 NAR sing 253 n n 
C9 O1 NAR sing 254 n n 
C9 C10 NAR sing 255 n n 
C9 H9 NAR sing 256 n n 
C10 C11 NAR sing 257 n y 
C10 C15 NAR doub 258 n y 
C11 C12 NAR doub 259 n y 
C11 H111 NAR sing 260 n n 
C12 C13 NAR sing 261 n y 
C12 H121 NAR sing 262 n n 
C13 C14 NAR doub 263 n y 
C13 O3 NAR sing 264 n n 
C14 C15 NAR sing 265 n y 
C14 H141 NAR sing 266 n n 
C15 H151 NAR sing 267 n n 
O3 HO3 NAR sing 268 n n 
O4 H41 NAR sing 269 n n 
O5 H51 NAR sing 270 n n 
#
_atom_sites.entry_id                     7VEZ 
_atom_sites.fract_transf_matrix[1][1]    0.013839 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002178 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012152 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007537 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAR A 1 501 421 NAR NAR . 
F 2 NAR B 1 501 421 NAR NAR . 
G 2 NAR C 1 501 421 NAR NAR . 
H 2 NAR D 1 501 421 NAR NAR . 
I 3 HOH A 1 601 2 HOH HOH . 
I 3 HOH A 2 602 46 HOH HOH . 
I 3 HOH A 3 603 47 HOH HOH . 
I 3 HOH A 4 604 26 HOH HOH . 
I 3 HOH A 5 605 36 HOH HOH . 
I 3 HOH A 6 606 50 HOH HOH . 
I 3 HOH A 7 607 64 HOH HOH . 
I 3 HOH A 8 608 3 HOH HOH . 
I 3 HOH A 9 609 87 HOH HOH . 
I 3 HOH A 10 610 92 HOH HOH . 
I 3 HOH A 11 611 78 HOH HOH . 
I 3 HOH A 12 612 81 HOH HOH . 
I 3 HOH A 13 613 73 HOH HOH . 
I 3 HOH A 14 614 53 HOH HOH . 
I 3 HOH A 15 615 35 HOH HOH . 
I 3 HOH A 16 616 20 HOH HOH . 
I 3 HOH A 17 617 17 HOH HOH . 
I 3 HOH A 18 618 25 HOH HOH . 
I 3 HOH A 19 619 32 HOH HOH . 
I 3 HOH A 20 620 56 HOH HOH . 
I 3 HOH A 21 621 34 HOH HOH . 
I 3 HOH A 22 622 59 HOH HOH . 
I 3 HOH A 23 623 82 HOH HOH . 
I 3 HOH A 24 624 69 HOH HOH . 
I 3 HOH A 25 625 9 HOH HOH . 
I 3 HOH A 26 626 52 HOH HOH . 
I 3 HOH A 27 627 105 HOH HOH . 
I 3 HOH A 28 628 77 HOH HOH . 
I 3 HOH A 29 629 84 HOH HOH . 
I 3 HOH A 30 630 11 HOH HOH . 
I 3 HOH A 31 631 101 HOH HOH . 
I 3 HOH A 32 632 40 HOH HOH . 
I 3 HOH A 33 633 57 HOH HOH . 
J 3 HOH B 1 601 38 HOH HOH . 
J 3 HOH B 2 602 90 HOH HOH . 
J 3 HOH B 3 603 83 HOH HOH . 
J 3 HOH B 4 604 67 HOH HOH . 
J 3 HOH B 5 605 21 HOH HOH . 
J 3 HOH B 6 606 62 HOH HOH . 
J 3 HOH B 7 607 74 HOH HOH . 
J 3 HOH B 8 608 24 HOH HOH . 
J 3 HOH B 9 609 22 HOH HOH . 
J 3 HOH B 10 610 16 HOH HOH . 
J 3 HOH B 11 611 55 HOH HOH . 
J 3 HOH B 12 612 104 HOH HOH . 
J 3 HOH B 13 613 54 HOH HOH . 
J 3 HOH B 14 614 19 HOH HOH . 
J 3 HOH B 15 615 86 HOH HOH . 
J 3 HOH B 16 616 31 HOH HOH . 
K 3 HOH C 1 601 28 HOH HOH . 
K 3 HOH C 2 602 96 HOH HOH . 
K 3 HOH C 3 603 5 HOH HOH . 
K 3 HOH C 4 604 30 HOH HOH . 
K 3 HOH C 5 605 27 HOH HOH . 
K 3 HOH C 6 606 91 HOH HOH . 
K 3 HOH C 7 607 72 HOH HOH . 
K 3 HOH C 8 608 103 HOH HOH . 
K 3 HOH C 9 609 68 HOH HOH . 
K 3 HOH C 10 610 43 HOH HOH . 
K 3 HOH C 11 611 98 HOH HOH . 
K 3 HOH C 12 612 88 HOH HOH . 
K 3 HOH C 13 613 12 HOH HOH . 
K 3 HOH C 14 614 75 HOH HOH . 
K 3 HOH C 15 615 63 HOH HOH . 
K 3 HOH C 16 616 71 HOH HOH . 
K 3 HOH C 17 617 33 HOH HOH . 
K 3 HOH C 18 618 60 HOH HOH . 
K 3 HOH C 19 619 80 HOH HOH . 
K 3 HOH C 20 620 61 HOH HOH . 
K 3 HOH C 21 621 102 HOH HOH . 
K 3 HOH C 22 622 42 HOH HOH . 
L 3 HOH D 1 601 76 HOH HOH . 
L 3 HOH D 2 602 100 HOH HOH . 
L 3 HOH D 3 603 37 HOH HOH . 
L 3 HOH D 4 604 97 HOH HOH . 
L 3 HOH D 5 605 65 HOH HOH . 
L 3 HOH D 6 606 4 HOH HOH . 
L 3 HOH D 7 607 29 HOH HOH . 
L 3 HOH D 8 608 8 HOH HOH . 
L 3 HOH D 9 609 51 HOH HOH . 
L 3 HOH D 10 610 58 HOH HOH . 
L 3 HOH D 11 611 85 HOH HOH . 
L 3 HOH D 12 612 13 HOH HOH . 
L 3 HOH D 13 613 45 HOH HOH . 
L 3 HOH D 14 614 95 HOH HOH . 
L 3 HOH D 15 615 14 HOH HOH . 
L 3 HOH D 16 616 10 HOH HOH . 
L 3 HOH D 17 617 79 HOH HOH . 
L 3 HOH D 18 618 6 HOH HOH . 
L 3 HOH D 19 619 89 HOH HOH . 
L 3 HOH D 20 620 7 HOH HOH . 
L 3 HOH D 21 621 49 HOH HOH . 
L 3 HOH D 22 622 99 HOH HOH . 
L 3 HOH D 23 623 18 HOH HOH . 
L 3 HOH D 24 624 41 HOH HOH . 
L 3 HOH D 25 625 23 HOH HOH . 
L 3 HOH D 26 626 94 HOH HOH . 
L 3 HOH D 27 627 70 HOH HOH . 
L 3 HOH D 28 628 93 HOH HOH . 
L 3 HOH D 29 629 39 HOH HOH . 
L 3 HOH D 30 630 1 HOH HOH . 
L 3 HOH D 31 631 15 HOH HOH . 
L 3 HOH D 32 632 48 HOH HOH . 
L 3 HOH D 33 633 44 HOH HOH . 
L 3 HOH D 34 634 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAR . . . G 2 20.382 -18.991 -4.025 1 11.62 ? C1 NAR 501 C 1 
HETATM 2 C C2 NAR . . . G 2 20.144 -20.358 -3.802 1 14.57 ? C2 NAR 501 C 1 
HETATM 3 C C3 NAR . . . G 2 19.961 -20.907 -2.527 1 8.78 ? C3 NAR 501 C 1 
HETATM 4 C C4 NAR . . . G 2 20.009 -20.116 -1.422 1 10.71 ? C4 NAR 501 C 1 
HETATM 5 C C5 NAR . . . G 2 20.273 -18.683 -1.655 1 10.92 ? C5 NAR 501 C 1 
HETATM 6 C C6 NAR . . . G 2 20.462 -18.114 -2.979 1 10.71 ? C6 NAR 501 C 1 
HETATM 7 C C7 NAR . . . G 2 20.43 -17.795 -0.533 1 10.42 ? C7 NAR 501 C 1 
HETATM 8 C C8 NAR . . . G 2 20.529 -16.307 -0.742 1 9.45 ? C8 NAR 501 C 1 
HETATM 9 C C9 NAR . . . G 2 20.223 -15.898 -2.186 1 10.06 ? C9 NAR 501 C 1 
HETATM 10 O O1 NAR . . . G 2 20.729 -16.804 -3.107 1 8.72 ? O1 NAR 501 C 1 
HETATM 11 O O2 NAR . . . G 2 20.584 -18.34 0.496 1 12.73 ? O2 NAR 501 C 1 
HETATM 12 C C10 NAR . . . G 2 20.751 -14.565 -2.504 1 10.45 ? C10 NAR 501 C 1 
HETATM 13 C C11 NAR . . . G 2 21.977 -14.375 -3.165 1 10.78 ? C11 NAR 501 C 1 
HETATM 14 C C12 NAR . . . G 2 22.412 -13.11 -3.45 1 4.18 ? C12 NAR 501 C 1 
HETATM 15 C C13 NAR . . . G 2 21.62 -12.021 -3.092 1 9.13 ? C13 NAR 501 C 1 
HETATM 16 C C14 NAR . . . G 2 20.411 -12.239 -2.483 1 8.82 ? C14 NAR 501 C 1 
HETATM 17 C C15 NAR . . . G 2 19.979 -13.487 -2.184 1 3.23 ? C15 NAR 501 C 1 
HETATM 18 O O3 NAR . . . G 2 22.012 -10.765 -3.372 1 12.01 ? O3 NAR 501 C 1 
HETATM 19 O O4 NAR . . . G 2 20.085 -21.095 -4.919 1 9.69 ? O4 NAR 501 C 1 
HETATM 20 O O5 NAR . . . G 2 19.868 -20.478 -0.127 1 6.29 ? O5 NAR 501 C 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           20 
#