data_7VEZ # _model_server_result.job_id YJxsGhzqWbHtJ1TnBSsZyg _model_server_result.datetime_utc '2024-11-22 23:18:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vez # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 7VEZ # _exptl.entry_id 7VEZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 272.253 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NARINGENIN _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.94 _cell.angle_gamma 90 _cell.entry_id 7VEZ _cell.length_a 72.259 _cell.length_b 82.289 _cell.length_c 134.312 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VEZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,H,I,L 1 1 B,C,F,G,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C15 H12 O5' _chem_comp.formula_weight 272.253 _chem_comp.id NAR _chem_comp.mon_nstd_flag . _chem_comp.name NARINGENIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAR doub 237 n y C1 C6 NAR sing 238 n y C1 H11 NAR sing 239 n n C2 C3 NAR sing 240 n y C2 O4 NAR sing 241 n n C3 C4 NAR doub 242 n y C3 H31 NAR sing 243 n n C4 C5 NAR sing 244 n y C4 O5 NAR sing 245 n n C5 C6 NAR doub 246 n y C5 C7 NAR sing 247 n n C6 O1 NAR sing 248 n n C7 C8 NAR sing 249 n n C7 O2 NAR doub 250 n n C8 C9 NAR sing 251 n n C8 H81 NAR sing 252 n n C8 H82 NAR sing 253 n n C9 O1 NAR sing 254 n n C9 C10 NAR sing 255 n n C9 H9 NAR sing 256 n n C10 C11 NAR sing 257 n y C10 C15 NAR doub 258 n y C11 C12 NAR doub 259 n y C11 H111 NAR sing 260 n n C12 C13 NAR sing 261 n y C12 H121 NAR sing 262 n n C13 C14 NAR doub 263 n y C13 O3 NAR sing 264 n n C14 C15 NAR sing 265 n y C14 H141 NAR sing 266 n n C15 H151 NAR sing 267 n n O3 HO3 NAR sing 268 n n O4 H41 NAR sing 269 n n O5 H51 NAR sing 270 n n # _atom_sites.entry_id 7VEZ _atom_sites.fract_transf_matrix[1][1] 0.013839 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002178 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007537 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAR A 1 501 421 NAR NAR . F 2 NAR B 1 501 421 NAR NAR . G 2 NAR C 1 501 421 NAR NAR . H 2 NAR D 1 501 421 NAR NAR . I 3 HOH A 1 601 2 HOH HOH . I 3 HOH A 2 602 46 HOH HOH . I 3 HOH A 3 603 47 HOH HOH . I 3 HOH A 4 604 26 HOH HOH . I 3 HOH A 5 605 36 HOH HOH . I 3 HOH A 6 606 50 HOH HOH . I 3 HOH A 7 607 64 HOH HOH . I 3 HOH A 8 608 3 HOH HOH . I 3 HOH A 9 609 87 HOH HOH . I 3 HOH A 10 610 92 HOH HOH . I 3 HOH A 11 611 78 HOH HOH . I 3 HOH A 12 612 81 HOH HOH . I 3 HOH A 13 613 73 HOH HOH . I 3 HOH A 14 614 53 HOH HOH . I 3 HOH A 15 615 35 HOH HOH . I 3 HOH A 16 616 20 HOH HOH . I 3 HOH A 17 617 17 HOH HOH . I 3 HOH A 18 618 25 HOH HOH . I 3 HOH A 19 619 32 HOH HOH . I 3 HOH A 20 620 56 HOH HOH . I 3 HOH A 21 621 34 HOH HOH . I 3 HOH A 22 622 59 HOH HOH . I 3 HOH A 23 623 82 HOH HOH . I 3 HOH A 24 624 69 HOH HOH . I 3 HOH A 25 625 9 HOH HOH . I 3 HOH A 26 626 52 HOH HOH . I 3 HOH A 27 627 105 HOH HOH . I 3 HOH A 28 628 77 HOH HOH . I 3 HOH A 29 629 84 HOH HOH . I 3 HOH A 30 630 11 HOH HOH . I 3 HOH A 31 631 101 HOH HOH . I 3 HOH A 32 632 40 HOH HOH . I 3 HOH A 33 633 57 HOH HOH . J 3 HOH B 1 601 38 HOH HOH . J 3 HOH B 2 602 90 HOH HOH . J 3 HOH B 3 603 83 HOH HOH . J 3 HOH B 4 604 67 HOH HOH . J 3 HOH B 5 605 21 HOH HOH . J 3 HOH B 6 606 62 HOH HOH . J 3 HOH B 7 607 74 HOH HOH . J 3 HOH B 8 608 24 HOH HOH . J 3 HOH B 9 609 22 HOH HOH . J 3 HOH B 10 610 16 HOH HOH . J 3 HOH B 11 611 55 HOH HOH . J 3 HOH B 12 612 104 HOH HOH . J 3 HOH B 13 613 54 HOH HOH . J 3 HOH B 14 614 19 HOH HOH . J 3 HOH B 15 615 86 HOH HOH . J 3 HOH B 16 616 31 HOH HOH . K 3 HOH C 1 601 28 HOH HOH . K 3 HOH C 2 602 96 HOH HOH . K 3 HOH C 3 603 5 HOH HOH . K 3 HOH C 4 604 30 HOH HOH . K 3 HOH C 5 605 27 HOH HOH . K 3 HOH C 6 606 91 HOH HOH . K 3 HOH C 7 607 72 HOH HOH . K 3 HOH C 8 608 103 HOH HOH . K 3 HOH C 9 609 68 HOH HOH . K 3 HOH C 10 610 43 HOH HOH . K 3 HOH C 11 611 98 HOH HOH . K 3 HOH C 12 612 88 HOH HOH . K 3 HOH C 13 613 12 HOH HOH . K 3 HOH C 14 614 75 HOH HOH . K 3 HOH C 15 615 63 HOH HOH . K 3 HOH C 16 616 71 HOH HOH . K 3 HOH C 17 617 33 HOH HOH . K 3 HOH C 18 618 60 HOH HOH . K 3 HOH C 19 619 80 HOH HOH . K 3 HOH C 20 620 61 HOH HOH . K 3 HOH C 21 621 102 HOH HOH . K 3 HOH C 22 622 42 HOH HOH . L 3 HOH D 1 601 76 HOH HOH . L 3 HOH D 2 602 100 HOH HOH . L 3 HOH D 3 603 37 HOH HOH . L 3 HOH D 4 604 97 HOH HOH . L 3 HOH D 5 605 65 HOH HOH . L 3 HOH D 6 606 4 HOH HOH . L 3 HOH D 7 607 29 HOH HOH . L 3 HOH D 8 608 8 HOH HOH . L 3 HOH D 9 609 51 HOH HOH . L 3 HOH D 10 610 58 HOH HOH . L 3 HOH D 11 611 85 HOH HOH . L 3 HOH D 12 612 13 HOH HOH . L 3 HOH D 13 613 45 HOH HOH . L 3 HOH D 14 614 95 HOH HOH . L 3 HOH D 15 615 14 HOH HOH . L 3 HOH D 16 616 10 HOH HOH . L 3 HOH D 17 617 79 HOH HOH . L 3 HOH D 18 618 6 HOH HOH . L 3 HOH D 19 619 89 HOH HOH . L 3 HOH D 20 620 7 HOH HOH . L 3 HOH D 21 621 49 HOH HOH . L 3 HOH D 22 622 99 HOH HOH . L 3 HOH D 23 623 18 HOH HOH . L 3 HOH D 24 624 41 HOH HOH . L 3 HOH D 25 625 23 HOH HOH . L 3 HOH D 26 626 94 HOH HOH . L 3 HOH D 27 627 70 HOH HOH . L 3 HOH D 28 628 93 HOH HOH . L 3 HOH D 29 629 39 HOH HOH . L 3 HOH D 30 630 1 HOH HOH . L 3 HOH D 31 631 15 HOH HOH . L 3 HOH D 32 632 48 HOH HOH . L 3 HOH D 33 633 44 HOH HOH . L 3 HOH D 34 634 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAR . . . H 2 -20.414 21.262 -44.767 1 12.01 ? C1 NAR 501 D 1 HETATM 2 C C2 NAR . . . H 2 -19.881 22.406 -45.329 1 11.94 ? C2 NAR 501 D 1 HETATM 3 C C3 NAR . . . H 2 -19.07 23.301 -44.664 1 11.83 ? C3 NAR 501 D 1 HETATM 4 C C4 NAR . . . H 2 -18.777 23.167 -43.337 1 13.08 ? C4 NAR 501 D 1 HETATM 5 C C5 NAR . . . H 2 -19.339 21.976 -42.705 1 8.95 ? C5 NAR 501 D 1 HETATM 6 C C6 NAR . . . H 2 -20.177 21.008 -43.429 1 13.47 ? C6 NAR 501 D 1 HETATM 7 C C7 NAR . . . H 2 -19.146 21.763 -41.312 1 8.9 ? C7 NAR 501 D 1 HETATM 8 C C8 NAR . . . H 2 -19.42 20.412 -40.722 1 11.21 ? C8 NAR 501 D 1 HETATM 9 C C9 NAR . . . H 2 -19.954 19.368 -41.736 1 9.08 ? C9 NAR 501 D 1 HETATM 10 O O1 NAR . . . H 2 -20.664 19.94 -42.777 1 10.18 ? O1 NAR 501 D 1 HETATM 11 O O2 NAR . . . H 2 -18.922 22.724 -40.681 1 11.19 ? O2 NAR 501 D 1 HETATM 12 C C10 NAR . . . H 2 -20.803 18.346 -41.079 1 5.58 ? C10 NAR 501 D 1 HETATM 13 C C11 NAR . . . H 2 -22.183 18.325 -41.156 1 7.16 ? C11 NAR 501 D 1 HETATM 14 C C12 NAR . . . H 2 -22.905 17.332 -40.529 1 4.82 ? C12 NAR 501 D 1 HETATM 15 C C13 NAR . . . H 2 -22.21 16.319 -39.823 1 9.64 ? C13 NAR 501 D 1 HETATM 16 C C14 NAR . . . H 2 -20.844 16.374 -39.799 1 4.37 ? C14 NAR 501 D 1 HETATM 17 C C15 NAR . . . H 2 -20.166 17.366 -40.397 1 4.03 ? C15 NAR 501 D 1 HETATM 18 O O3 NAR . . . H 2 -22.794 15.321 -39.167 1 7.89 ? O3 NAR 501 D 1 HETATM 19 O O4 NAR . . . H 2 -20.122 22.613 -46.604 1 17.46 ? O4 NAR 501 D 1 HETATM 20 O O5 NAR . . . H 2 -18.015 24.056 -42.642 1 10.77 ? O5 NAR 501 D 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #