data_7VFP
#
_model_server_result.job_id            ZKVn9t7C2J-AzwZbiJDZrg 
_model_server_result.datetime_utc      '2025-03-06 07:04:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vfp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":301}' 
#
_entry.id    7VFP 
#
_exptl.entry_id    7VFP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VFP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VFP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E OG1 THR 43 E THR 41 1_555 H MG MG . E MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc2 H MG MG . E MG 300 1_555 I O2B ATP . E ATP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? 
metalc ? metalc3 H MG MG . E MG 300 1_555 I O3G ATP . E ATP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc4 H MG MG . E MG 300 1_555 J O HOH . E HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc5 H MG MG . E MG 300 1_555 J O HOH . E HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 178 n n 
CHA C4D HEM doub 179 n n 
CHA HHA HEM sing 180 n n 
CHB C4A HEM sing 181 n n 
CHB C1B HEM doub 182 n n 
CHB HHB HEM sing 183 n n 
CHC C4B HEM sing 184 n n 
CHC C1C HEM doub 185 n n 
CHC HHC HEM sing 186 n n 
CHD C4C HEM doub 187 n n 
CHD C1D HEM sing 188 n n 
CHD HHD HEM sing 189 n n 
C1A C2A HEM doub 190 n y 
C1A NA HEM sing 191 n y 
C2A C3A HEM sing 192 n y 
C2A CAA HEM sing 193 n n 
C3A C4A HEM doub 194 n y 
C3A CMA HEM sing 195 n n 
C4A NA HEM sing 196 n y 
CMA HMA HEM sing 197 n n 
CMA HMAA HEM sing 198 n n 
CMA HMAB HEM sing 199 n n 
CAA CBA HEM sing 200 n n 
CAA HAA HEM sing 201 n n 
CAA HAAA HEM sing 202 n n 
CBA CGA HEM sing 203 n n 
CBA HBA HEM sing 204 n n 
CBA HBAA HEM sing 205 n n 
CGA O1A HEM doub 206 n n 
CGA O2A HEM sing 207 n n 
C1B C2B HEM sing 208 n n 
C1B NB HEM sing 209 n n 
C2B C3B HEM doub 210 n n 
C2B CMB HEM sing 211 n n 
C3B C4B HEM sing 212 n n 
C3B CAB HEM sing 213 n n 
C4B NB HEM doub 214 n n 
CMB HMB HEM sing 215 n n 
CMB HMBA HEM sing 216 n n 
CMB HMBB HEM sing 217 n n 
CAB CBB HEM doub 218 n n 
CAB HAB HEM sing 219 n n 
CBB HBB HEM sing 220 n n 
CBB HBBA HEM sing 221 n n 
C1C C2C HEM sing 222 n y 
C1C NC HEM sing 223 n y 
C2C C3C HEM doub 224 n y 
C2C CMC HEM sing 225 n n 
C3C C4C HEM sing 226 n y 
C3C CAC HEM sing 227 n n 
C4C NC HEM sing 228 n y 
CMC HMC HEM sing 229 n n 
CMC HMCA HEM sing 230 n n 
CMC HMCB HEM sing 231 n n 
CAC CBC HEM doub 232 n n 
CAC HAC HEM sing 233 n n 
CBC HBC HEM sing 234 n n 
CBC HBCA HEM sing 235 n n 
C1D C2D HEM sing 236 n n 
C1D ND HEM doub 237 n n 
C2D C3D HEM doub 238 n n 
C2D CMD HEM sing 239 n n 
C3D C4D HEM sing 240 n n 
C3D CAD HEM sing 241 n n 
C4D ND HEM sing 242 n n 
CMD HMD HEM sing 243 n n 
CMD HMDA HEM sing 244 n n 
CMD HMDB HEM sing 245 n n 
CAD CBD HEM sing 246 n n 
CAD HAD HEM sing 247 n n 
CAD HADA HEM sing 248 n n 
CBD CGD HEM sing 249 n n 
CBD HBD HEM sing 250 n n 
CBD HBDA HEM sing 251 n n 
CGD O1D HEM doub 252 n n 
CGD O2D HEM sing 253 n n 
O2A H2A HEM sing 254 n n 
O2D H2D HEM sing 255 n n 
FE NA HEM sing 256 n n 
FE NB HEM sing 257 n n 
FE NC HEM sing 258 n n 
FE ND HEM sing 259 n n 
#
_atom_sites.entry_id                     7VFP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 HEM C 1 301 301 HEM HEM . 
H 6 MG E 1 300 300 MG MG . 
I 7 ATP E 1 301 301 ATP ATP . 
J 8 HOH E 1 401 302 HOH HOH . 
J 8 HOH E 2 402 303 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . G 5 147.559 133.591 108.119 1 138.46 ? CHA HEM 301 C 1 
HETATM 2 C CHB HEM . . . G 5 146.905 129.952 111.232 1 138.46 ? CHB HEM 301 C 1 
HETATM 3 C CHC HEM . . . G 5 149.777 127.178 108.489 1 138.46 ? CHC HEM 301 C 1 
HETATM 4 C CHD HEM . . . G 5 150.912 131.022 105.75 1 138.46 ? CHD HEM 301 C 1 
HETATM 5 C C1A HEM . . . G 5 147.282 132.899 109.274 1 138.46 ? C1A HEM 301 C 1 
HETATM 6 C C2A HEM . . . G 5 146.902 133.466 110.551 1 138.46 ? C2A HEM 301 C 1 
HETATM 7 C C3A HEM . . . G 5 146.724 132.461 111.408 1 138.46 ? C3A HEM 301 C 1 
HETATM 8 C C4A HEM . . . G 5 146.979 131.22 110.707 1 138.46 ? C4A HEM 301 C 1 
HETATM 9 C CMA HEM . . . G 5 146.314 132.598 112.889 1 138.46 ? CMA HEM 301 C 1 
HETATM 10 C CAA HEM . . . G 5 146.74 134.968 110.871 1 138.46 ? CAA HEM 301 C 1 
HETATM 11 C CBA HEM . . . G 5 148.095 135.662 110.771 1 138.46 ? CBA HEM 301 C 1 
HETATM 12 C CGA HEM . . . G 5 147.908 137.155 110.799 1 138.46 ? CGA HEM 301 C 1 
HETATM 13 O O1A HEM . . . G 5 148.932 137.886 110.783 1 138.46 ? O1A HEM 301 C 1 
HETATM 14 O O2A HEM . . . G 5 146.739 137.616 110.837 1 138.46 ? O2A HEM 301 C 1 
HETATM 15 C C1B HEM . . . G 5 147.616 128.868 110.768 1 138.46 ? C1B HEM 301 C 1 
HETATM 16 C C2B HEM . . . G 5 147.672 127.555 111.375 1 138.46 ? C2B HEM 301 C 1 
HETATM 17 C C3B HEM . . . G 5 148.464 126.778 110.63 1 138.46 ? C3B HEM 301 C 1 
HETATM 18 C C4B HEM . . . G 5 148.938 127.576 109.508 1 138.46 ? C4B HEM 301 C 1 
HETATM 19 C CMB HEM . . . G 5 146.945 127.13 112.67 1 138.46 ? CMB HEM 301 C 1 
HETATM 20 C CAB HEM . . . G 5 148.776 125.296 110.957 1 138.46 ? CAB HEM 301 C 1 
HETATM 21 C CBB HEM . . . G 5 149.615 124.549 110.231 1 138.46 ? CBB HEM 301 C 1 
HETATM 22 C C1C HEM . . . G 5 150.413 128 107.585 1 138.46 ? C1C HEM 301 C 1 
HETATM 23 C C2C HEM . . . G 5 151.582 127.654 106.806 1 138.46 ? C2C HEM 301 C 1 
HETATM 24 C C3C HEM . . . G 5 151.911 128.7 106.044 1 138.46 ? C3C HEM 301 C 1 
HETATM 25 C C4C HEM . . . G 5 150.953 129.764 106.315 1 138.46 ? C4C HEM 301 C 1 
HETATM 26 C CMC HEM . . . G 5 152.323 126.301 106.847 1 138.46 ? CMC HEM 301 C 1 
HETATM 27 C CAC HEM . . . G 5 153.115 128.703 105.07 1 138.46 ? CAC HEM 301 C 1 
HETATM 28 C CBC HEM . . . G 5 153.423 129.743 104.286 1 138.46 ? CBC HEM 301 C 1 
HETATM 29 C C1D HEM . . . G 5 150.08 132.053 106.128 1 138.46 ? C1D HEM 301 C 1 
HETATM 30 C C2D HEM . . . G 5 149.998 133.364 105.514 1 138.46 ? C2D HEM 301 C 1 
HETATM 31 C C3D HEM . . . G 5 149.075 134.073 106.168 1 138.46 ? C3D HEM 301 C 1 
HETATM 32 C C4D HEM . . . G 5 148.534 133.237 107.218 1 138.46 ? C4D HEM 301 C 1 
HETATM 33 C CMD HEM . . . G 5 150.837 133.855 104.316 1 138.46 ? CMD HEM 301 C 1 
HETATM 34 C CAD HEM . . . G 5 148.643 135.527 105.871 1 138.46 ? CAD HEM 301 C 1 
HETATM 35 C CBD HEM . . . G 5 149.25 136.452 106.923 1 138.46 ? CBD HEM 301 C 1 
HETATM 36 C CGD HEM . . . G 5 148.367 137.653 107.138 1 138.46 ? CGD HEM 301 C 1 
HETATM 37 O O1D HEM . . . G 5 148.805 138.604 107.835 1 138.46 ? O1D HEM 301 C 1 
HETATM 38 O O2D HEM . . . G 5 147.225 137.662 106.613 1 138.46 ? O2D HEM 301 C 1 
HETATM 39 N NA HEM . . . G 5 147.321 131.525 109.405 1 138.46 ? NA HEM 301 C 1 
HETATM 40 N NB HEM . . . G 5 148.397 128.842 109.63 1 138.46 ? NB HEM 301 C 1 
HETATM 41 N NC HEM . . . G 5 150.056 129.295 107.261 1 138.46 ? NC HEM 301 C 1 
HETATM 42 N ND HEM . . . G 5 149.17 132.013 107.165 1 138.46 ? ND HEM 301 C 1 
HETATM 43 FE FE HEM . . . G 5 148.731 130.422 108.372 1 138.46 ? FE HEM 301 C 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#