data_7VGC
#
_model_server_result.job_id            ik0P0hRvM5jVlSIPnoV6LQ 
_model_server_result.datetime_utc      '2024-11-25 09:02:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vgc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":801}' 
#
_entry.id    7VGC 
#
_exptl.entry_id    7VGC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              330.378 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-BENZYLOXYCARBONYL-L-PROLYL-L-PROLINAL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.29 
_cell.angle_gamma         90 
_cell.entry_id            7VGC 
_cell.length_a            62.108 
_cell.length_b            65.622 
_cell.length_c            91.765 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VGC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 634 A CYS 634 1_555 A SG CYS 667 A CYS 667 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
covale ? covale1 A OG SER 562 A SER 562 1_555 B C1 ZPR . A ZPR 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
#
_chem_comp.formula           'C18 H22 N2 O4' 
_chem_comp.formula_weight    330.378 
_chem_comp.id                ZPR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-BENZYLOXYCARBONYL-L-PROLYL-L-PROLINAL 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     Z-PRO-PROLINAL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O2 ZPR doub 376 n n 
C1 C3 ZPR sing 377 n n 
C1 H11 ZPR sing 378 n n 
C3 C4 ZPR sing 379 n n 
C3 N7 ZPR sing 380 n n 
C3 H31 ZPR sing 381 n n 
C4 C5 ZPR sing 382 n n 
C4 H41 ZPR sing 383 n n 
C4 H42 ZPR sing 384 n n 
C5 C6 ZPR sing 385 n n 
C5 H51 ZPR sing 386 n n 
C5 H52 ZPR sing 387 n n 
C6 N7 ZPR sing 388 n n 
C6 H61 ZPR sing 389 n n 
C6 H62 ZPR sing 390 n n 
N7 C8 ZPR sing 391 n n 
C8 O9 ZPR doub 392 n n 
C8 C10 ZPR sing 393 n n 
C10 C11 ZPR sing 394 n n 
C10 N14 ZPR sing 395 n n 
C10 H101 ZPR sing 396 n n 
C11 C12 ZPR sing 397 n n 
C11 H111 ZPR sing 398 n n 
C11 H112 ZPR sing 399 n n 
C12 C13 ZPR sing 400 n n 
C12 H121 ZPR sing 401 n n 
C12 H122 ZPR sing 402 n n 
C13 N14 ZPR sing 403 n n 
C13 H131 ZPR sing 404 n n 
C13 H132 ZPR sing 405 n n 
N14 C15 ZPR sing 406 n n 
C15 O16 ZPR doub 407 n n 
C15 O17 ZPR sing 408 n n 
O17 C18 ZPR sing 409 n n 
C18 C19 ZPR sing 410 n n 
C18 H181 ZPR sing 411 n n 
C18 H182 ZPR sing 412 n n 
C19 C20 ZPR doub 413 n y 
C19 C24 ZPR sing 414 n y 
C20 C21 ZPR sing 415 n y 
C20 H201 ZPR sing 416 n n 
C21 C22 ZPR doub 417 n y 
C21 H211 ZPR sing 418 n n 
C22 C23 ZPR sing 419 n y 
C22 H221 ZPR sing 420 n n 
C23 C24 ZPR doub 421 n y 
C23 H231 ZPR sing 422 n n 
C24 H241 ZPR sing 423 n n 
#
_atom_sites.entry_id                     7VGC 
_atom_sites.fract_transf_matrix[1][1]    0.016101 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004402 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015239 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011297 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZPR A 1 801 801 ZPR ZPR . 
C 3 CL A 1 802 1 CL CL . 
D 3 CL A 1 803 2 CL CL . 
E 4 HOH A 1 901 61 HOH HOH . 
E 4 HOH A 2 902 45 HOH HOH . 
E 4 HOH A 3 903 20 HOH HOH . 
E 4 HOH A 4 904 2 HOH HOH . 
E 4 HOH A 5 905 40 HOH HOH . 
E 4 HOH A 6 906 32 HOH HOH . 
E 4 HOH A 7 907 64 HOH HOH . 
E 4 HOH A 8 908 22 HOH HOH . 
E 4 HOH A 9 909 46 HOH HOH . 
E 4 HOH A 10 910 38 HOH HOH . 
E 4 HOH A 11 911 11 HOH HOH . 
E 4 HOH A 12 912 28 HOH HOH . 
E 4 HOH A 13 913 56 HOH HOH . 
E 4 HOH A 14 914 36 HOH HOH . 
E 4 HOH A 15 915 42 HOH HOH . 
E 4 HOH A 16 916 49 HOH HOH . 
E 4 HOH A 17 917 57 HOH HOH . 
E 4 HOH A 18 918 35 HOH HOH . 
E 4 HOH A 19 919 18 HOH HOH . 
E 4 HOH A 20 920 55 HOH HOH . 
E 4 HOH A 21 921 7 HOH HOH . 
E 4 HOH A 22 922 29 HOH HOH . 
E 4 HOH A 23 923 13 HOH HOH . 
E 4 HOH A 24 924 1 HOH HOH . 
E 4 HOH A 25 925 43 HOH HOH . 
E 4 HOH A 26 926 9 HOH HOH . 
E 4 HOH A 27 927 17 HOH HOH . 
E 4 HOH A 28 928 44 HOH HOH . 
E 4 HOH A 29 929 6 HOH HOH . 
E 4 HOH A 30 930 10 HOH HOH . 
E 4 HOH A 31 931 25 HOH HOH . 
E 4 HOH A 32 932 8 HOH HOH . 
E 4 HOH A 33 933 23 HOH HOH . 
E 4 HOH A 34 934 58 HOH HOH . 
E 4 HOH A 35 935 31 HOH HOH . 
E 4 HOH A 36 936 26 HOH HOH . 
E 4 HOH A 37 937 14 HOH HOH . 
E 4 HOH A 38 938 19 HOH HOH . 
E 4 HOH A 39 939 33 HOH HOH . 
E 4 HOH A 40 940 21 HOH HOH . 
E 4 HOH A 41 941 30 HOH HOH . 
E 4 HOH A 42 942 34 HOH HOH . 
E 4 HOH A 43 943 4 HOH HOH . 
E 4 HOH A 44 944 65 HOH HOH . 
E 4 HOH A 45 945 24 HOH HOH . 
E 4 HOH A 46 946 27 HOH HOH . 
E 4 HOH A 47 947 41 HOH HOH . 
E 4 HOH A 48 948 16 HOH HOH . 
E 4 HOH A 49 949 12 HOH HOH . 
E 4 HOH A 50 950 15 HOH HOH . 
E 4 HOH A 51 951 3 HOH HOH . 
E 4 HOH A 52 952 5 HOH HOH . 
E 4 HOH A 53 953 66 HOH HOH . 
E 4 HOH A 54 954 62 HOH HOH . 
E 4 HOH A 55 955 53 HOH HOH . 
E 4 HOH A 56 956 37 HOH HOH . 
E 4 HOH A 57 957 39 HOH HOH . 
E 4 HOH A 58 958 60 HOH HOH . 
E 4 HOH A 59 959 67 HOH HOH . 
E 4 HOH A 60 960 52 HOH HOH . 
E 4 HOH A 61 961 50 HOH HOH . 
E 4 HOH A 62 962 59 HOH HOH . 
E 4 HOH A 63 963 54 HOH HOH . 
E 4 HOH A 64 964 47 HOH HOH . 
E 4 HOH A 65 965 48 HOH HOH . 
E 4 HOH A 66 966 51 HOH HOH . 
E 4 HOH A 67 967 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C20 ZPR . . . B 2 20.433 -3.165 26.655 1 40.49 0 C20 ZPR 801 A 1 
HETATM 2 C C21 ZPR . . . B 2 21.576 -3.957 26.682 1 45.13 0 C21 ZPR 801 A 1 
HETATM 3 C C22 ZPR . . . B 2 22.665 -3.597 27.451 1 41.5 0 C22 ZPR 801 A 1 
HETATM 4 C C23 ZPR . . . B 2 22.611 -2.442 28.197 1 38.68 0 C23 ZPR 801 A 1 
HETATM 5 C C24 ZPR . . . B 2 21.475 -1.645 28.165 1 38.65 0 C24 ZPR 801 A 1 
HETATM 6 C C19 ZPR . . . B 2 20.37 -2.007 27.411 1 41.2 0 C19 ZPR 801 A 1 
HETATM 7 C C18 ZPR . . . B 2 19.161 -1.116 27.354 1 43.13 0 C18 ZPR 801 A 1 
HETATM 8 O O17 ZPR . . . B 2 19.535 -0.021 26.468 1 45.47 0 O17 ZPR 801 A 1 
HETATM 9 C C15 ZPR . . . B 2 18.617 0.911 26.198 1 43.99 0 C15 ZPR 801 A 1 
HETATM 10 O O16 ZPR . . . B 2 17.827 1.365 26.992 1 48.75 0 O16 ZPR 801 A 1 
HETATM 11 N N14 ZPR . . . B 2 18.751 1.345 24.938 1 42.02 0 N14 ZPR 801 A 1 
HETATM 12 C C10 ZPR . . . B 2 18.468 2.721 24.536 1 39.44 0 C10 ZPR 801 A 1 
HETATM 13 C C8 ZPR . . . B 2 16.97 3.012 24.633 1 39.28 0 C8 ZPR 801 A 1 
HETATM 14 O O9 ZPR . . . B 2 16.157 2.088 24.616 1 38.16 0 O9 ZPR 801 A 1 
HETATM 15 C C11 ZPR . . . B 2 18.923 2.75 23.071 1 37.64 0 C11 ZPR 801 A 1 
HETATM 16 C C12 ZPR . . . B 2 18.793 1.313 22.623 1 37.09 0 C12 ZPR 801 A 1 
HETATM 17 C C13 ZPR . . . B 2 19.212 0.514 23.826 1 39.83 0 C13 ZPR 801 A 1 
HETATM 18 C C4 ZPR . . . B 2 15.171 6.077 25.27 1 36.3 0 C4 ZPR 801 A 1 
HETATM 19 C C5 ZPR . . . B 2 16.461 6.646 24.794 1 35.21 0 C5 ZPR 801 A 1 
HETATM 20 C C1 ZPR . . . B 2 14.724 4.788 23.236 1 36.87 0 C1 ZPR 801 A 1 
HETATM 21 O O2 ZPR . . . B 2 15.458 4.917 22.304 1 38.77 0 O2 ZPR 801 A 1 
HETATM 22 N N7 ZPR . . . B 2 16.58 4.3 24.729 1 37.15 0 N7 ZPR 801 A 1 
HETATM 23 C C6 ZPR . . . B 2 17.432 5.489 24.876 1 36.38 0 C6 ZPR 801 A 1 
HETATM 24 C C3 ZPR . . . B 2 15.17 4.669 24.669 1 36.47 0 C3 ZPR 801 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           24 
#