data_7VGU # _model_server_result.job_id PSZTbaE5mqt7Mg_HaIyH_g _model_server_result.datetime_utc '2024-11-13 04:42:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vgu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 7VGU # _exptl.entry_id 7VGU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 86.175 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEXANE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 131.5 _cell.angle_gamma 90 _cell.entry_id 7VGU _cell.length_a 104.3 _cell.length_b 51.1 _cell.length_c 78.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VGU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 242 A LYS 235 1_555 B C15 RET . A RET 301 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.31 ? covale ? covale2 A NZ LYS 242 A LYS 235 1_555 B C15 RET . A RET 301 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.309 ? # _chem_comp.formula 'C6 H14' _chem_comp.formula_weight 86.175 _chem_comp.id HEX _chem_comp.mon_nstd_flag . _chem_comp.name HEXANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 HEX sing 160 n n C1 H11 HEX sing 161 n n C1 H12 HEX sing 162 n n C1 H13 HEX sing 163 n n C2 C3 HEX sing 164 n n C2 H21 HEX sing 165 n n C2 H22 HEX sing 166 n n C3 C4 HEX sing 167 n n C3 H31 HEX sing 168 n n C3 H32 HEX sing 169 n n C4 C5 HEX sing 170 n n C4 H41 HEX sing 171 n n C4 H42 HEX sing 172 n n C5 C6 HEX sing 173 n n C5 H51 HEX sing 174 n n C5 H52 HEX sing 175 n n C6 H61 HEX sing 176 n n C6 H62 HEX sing 177 n n C6 H63 HEX sing 178 n n # _atom_sites.entry_id 7VGU _atom_sites.fract_transf_matrix[1][1] 0.009588 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008483 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017031 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 1 RET RET . C 3 HEX A 1 302 1 HEX HEX . D 3 HEX A 1 303 2 HEX HEX . E 3 HEX A 1 304 3 HEX HEX . F 3 HEX A 1 305 4 HEX HEX . G 4 D10 A 1 306 2 D10 D10 . H 4 D10 A 1 307 3 D10 D10 . I 4 D10 A 1 308 4 D10 D10 . J 5 BR A 1 309 1 BR BR . K 5 BR A 1 310 2 BR BR . L 5 BR A 1 311 3 BR BR . M 6 HOH A 1 401 552 HOH HOH . M 6 HOH A 2 402 404 HOH HOH . M 6 HOH A 3 403 524 HOH HOH . M 6 HOH A 4 404 507 HOH HOH . M 6 HOH A 5 405 401 HOH HOH . M 6 HOH A 6 406 411 HOH HOH . M 6 HOH A 7 407 405 HOH HOH . M 6 HOH A 8 408 410 HOH HOH . M 6 HOH A 9 409 417 HOH HOH . M 6 HOH A 10 410 420 HOH HOH . M 6 HOH A 11 411 501 HOH HOH . M 6 HOH A 12 412 435 HOH HOH . M 6 HOH A 13 413 408 HOH HOH . M 6 HOH A 14 414 504 HOH HOH . M 6 HOH A 15 415 402 HOH HOH . M 6 HOH A 16 416 406 HOH HOH . M 6 HOH A 17 417 447 HOH HOH . M 6 HOH A 18 418 528 HOH HOH . M 6 HOH A 19 419 512 HOH HOH . M 6 HOH A 20 420 514 HOH HOH . M 6 HOH A 21 421 439 HOH HOH . M 6 HOH A 22 422 503 HOH HOH . M 6 HOH A 23 423 407 HOH HOH . M 6 HOH A 24 424 429 HOH HOH . M 6 HOH A 25 425 461 HOH HOH . M 6 HOH A 26 426 523 HOH HOH . M 6 HOH A 27 427 434 HOH HOH . M 6 HOH A 28 428 508 HOH HOH . M 6 HOH A 29 429 454 HOH HOH . M 6 HOH A 30 430 511 HOH HOH . M 6 HOH A 31 431 544 HOH HOH . M 6 HOH A 32 432 462 HOH HOH . M 6 HOH A 33 433 467 HOH HOH . M 6 HOH A 34 434 502 HOH HOH . M 6 HOH A 35 435 422 HOH HOH . M 6 HOH A 36 436 513 HOH HOH . M 6 HOH A 37 437 526 HOH HOH . M 6 HOH A 38 438 510 HOH HOH . M 6 HOH A 39 439 403 HOH HOH . M 6 HOH A 40 440 424 HOH HOH . M 6 HOH A 41 441 442 HOH HOH . M 6 HOH A 42 442 509 HOH HOH . M 6 HOH A 43 443 438 HOH HOH . M 6 HOH A 44 444 492 HOH HOH . M 6 HOH A 45 445 433 HOH HOH . M 6 HOH A 46 446 455 HOH HOH . M 6 HOH A 47 447 421 HOH HOH . M 6 HOH A 48 448 458 HOH HOH . M 6 HOH A 49 449 425 HOH HOH . M 6 HOH A 50 450 412 HOH HOH . M 6 HOH A 51 451 457 HOH HOH . M 6 HOH A 52 452 517 HOH HOH . M 6 HOH A 53 453 491 HOH HOH . M 6 HOH A 54 454 515 HOH HOH . M 6 HOH A 55 455 436 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HEX . . . E 3 -17.126 7.826 11.556 1 61.94 ? C1 HEX 304 A 1 HETATM 2 C C2 HEX . . . E 3 -15.985 7.298 12.425 1 61.08 ? C2 HEX 304 A 1 HETATM 3 C C3 HEX . . . E 3 -16.49 7.036 13.842 1 57.78 ? C3 HEX 304 A 1 HETATM 4 C C4 HEX . . . E 3 -16.204 8.247 14.726 1 58.8 ? C4 HEX 304 A 1 HETATM 5 C C5 HEX . . . E 3 -17.388 8.492 15.657 1 49.62 ? C5 HEX 304 A 1 HETATM 6 C C6 HEX . . . E 3 -17.383 9.954 16.098 1 56.3 ? C6 HEX 304 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #