data_7VGU
#
_model_server_result.job_id            M6bFN1njXnL2JNucnkbyDg 
_model_server_result.datetime_utc      '2024-11-21 12:11:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vgu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":306}' 
#
_entry.id    7VGU 
#
_exptl.entry_id    7VGU 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              142.282 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DECANE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          131.5 
_cell.angle_gamma         90 
_cell.entry_id            7VGU 
_cell.length_a            104.3 
_cell.length_b            51.1 
_cell.length_c            78.4 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VGU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 242 A LYS 235 1_555 B C15 RET . A RET 301 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.31 ? 
covale ? covale2 A NZ LYS 242 A LYS 235 1_555 B C15 RET . A RET 301 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.309 ? 
#
_chem_comp.formula           'C10 H22' 
_chem_comp.formula_weight    142.282 
_chem_comp.id                D10 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 D10 sing 83 n n 
C1 H11 D10 sing 84 n n 
C1 H12 D10 sing 85 n n 
C1 H13 D10 sing 86 n n 
C2 C3 D10 sing 87 n n 
C2 H21 D10 sing 88 n n 
C2 H22 D10 sing 89 n n 
C3 C4 D10 sing 90 n n 
C3 H31 D10 sing 91 n n 
C3 H32 D10 sing 92 n n 
C4 C5 D10 sing 93 n n 
C4 H41 D10 sing 94 n n 
C4 H42 D10 sing 95 n n 
C5 C6 D10 sing 96 n n 
C5 H51 D10 sing 97 n n 
C5 H52 D10 sing 98 n n 
C6 C7 D10 sing 99 n n 
C6 H61 D10 sing 100 n n 
C6 H62 D10 sing 101 n n 
C7 C8 D10 sing 102 n n 
C7 H71 D10 sing 103 n n 
C7 H72 D10 sing 104 n n 
C8 C9 D10 sing 105 n n 
C8 H81 D10 sing 106 n n 
C8 H82 D10 sing 107 n n 
C9 C10 D10 sing 108 n n 
C9 H91 D10 sing 109 n n 
C9 H92 D10 sing 110 n n 
C10 H101 D10 sing 111 n n 
C10 H102 D10 sing 112 n n 
C10 H103 D10 sing 113 n n 
#
_atom_sites.entry_id                     7VGU 
_atom_sites.fract_transf_matrix[1][1]    0.009588 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008483 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019569 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017031 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 301 1 RET RET . 
C 3 HEX A 1 302 1 HEX HEX . 
D 3 HEX A 1 303 2 HEX HEX . 
E 3 HEX A 1 304 3 HEX HEX . 
F 3 HEX A 1 305 4 HEX HEX . 
G 4 D10 A 1 306 2 D10 D10 . 
H 4 D10 A 1 307 3 D10 D10 . 
I 4 D10 A 1 308 4 D10 D10 . 
J 5 BR A 1 309 1 BR BR . 
K 5 BR A 1 310 2 BR BR . 
L 5 BR A 1 311 3 BR BR . 
M 6 HOH A 1 401 552 HOH HOH . 
M 6 HOH A 2 402 404 HOH HOH . 
M 6 HOH A 3 403 524 HOH HOH . 
M 6 HOH A 4 404 507 HOH HOH . 
M 6 HOH A 5 405 401 HOH HOH . 
M 6 HOH A 6 406 411 HOH HOH . 
M 6 HOH A 7 407 405 HOH HOH . 
M 6 HOH A 8 408 410 HOH HOH . 
M 6 HOH A 9 409 417 HOH HOH . 
M 6 HOH A 10 410 420 HOH HOH . 
M 6 HOH A 11 411 501 HOH HOH . 
M 6 HOH A 12 412 435 HOH HOH . 
M 6 HOH A 13 413 408 HOH HOH . 
M 6 HOH A 14 414 504 HOH HOH . 
M 6 HOH A 15 415 402 HOH HOH . 
M 6 HOH A 16 416 406 HOH HOH . 
M 6 HOH A 17 417 447 HOH HOH . 
M 6 HOH A 18 418 528 HOH HOH . 
M 6 HOH A 19 419 512 HOH HOH . 
M 6 HOH A 20 420 514 HOH HOH . 
M 6 HOH A 21 421 439 HOH HOH . 
M 6 HOH A 22 422 503 HOH HOH . 
M 6 HOH A 23 423 407 HOH HOH . 
M 6 HOH A 24 424 429 HOH HOH . 
M 6 HOH A 25 425 461 HOH HOH . 
M 6 HOH A 26 426 523 HOH HOH . 
M 6 HOH A 27 427 434 HOH HOH . 
M 6 HOH A 28 428 508 HOH HOH . 
M 6 HOH A 29 429 454 HOH HOH . 
M 6 HOH A 30 430 511 HOH HOH . 
M 6 HOH A 31 431 544 HOH HOH . 
M 6 HOH A 32 432 462 HOH HOH . 
M 6 HOH A 33 433 467 HOH HOH . 
M 6 HOH A 34 434 502 HOH HOH . 
M 6 HOH A 35 435 422 HOH HOH . 
M 6 HOH A 36 436 513 HOH HOH . 
M 6 HOH A 37 437 526 HOH HOH . 
M 6 HOH A 38 438 510 HOH HOH . 
M 6 HOH A 39 439 403 HOH HOH . 
M 6 HOH A 40 440 424 HOH HOH . 
M 6 HOH A 41 441 442 HOH HOH . 
M 6 HOH A 42 442 509 HOH HOH . 
M 6 HOH A 43 443 438 HOH HOH . 
M 6 HOH A 44 444 492 HOH HOH . 
M 6 HOH A 45 445 433 HOH HOH . 
M 6 HOH A 46 446 455 HOH HOH . 
M 6 HOH A 47 447 421 HOH HOH . 
M 6 HOH A 48 448 458 HOH HOH . 
M 6 HOH A 49 449 425 HOH HOH . 
M 6 HOH A 50 450 412 HOH HOH . 
M 6 HOH A 51 451 457 HOH HOH . 
M 6 HOH A 52 452 517 HOH HOH . 
M 6 HOH A 53 453 491 HOH HOH . 
M 6 HOH A 54 454 515 HOH HOH . 
M 6 HOH A 55 455 436 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 D10 . . . G 4 -6.739 19.644 39.106 1 53.6 ? C1 D10 306 A 1 
HETATM 2 C C2 D10 . . . G 4 -7.498 19.709 40.445 1 59.34 ? C2 D10 306 A 1 
HETATM 3 C C3 D10 . . . G 4 -7.405 18.212 40.847 1 46.64 ? C3 D10 306 A 1 
HETATM 4 C C4 D10 . . . G 4 -8.298 17.772 42.026 1 49.4 ? C4 D10 306 A 1 
HETATM 5 C C5 D10 . . . G 4 -7.408 17.262 43.178 1 48.27 ? C5 D10 306 A 1 
HETATM 6 C C6 D10 . . . G 4 -8.268 16.534 44.23 1 47.44 ? C6 D10 306 A 1 
HETATM 7 C C7 D10 . . . G 4 -9.511 17.378 44.565 1 41.07 ? C7 D10 306 A 1 
HETATM 8 C C8 D10 . . . G 4 -10.531 16.507 45.323 1 43.73 ? C8 D10 306 A 1 
HETATM 9 C C9 D10 . . . G 4 -11.248 17.364 46.384 1 51.49 ? C9 D10 306 A 1 
HETATM 10 C C10 D10 . . . G 4 -10.933 16.836 47.797 1 38.95 ? C10 D10 306 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#