data_7VGY # _model_server_result.job_id blZBaNwOPPnTJuYfL-i4ow _model_server_result.datetime_utc '2025-03-05 20:15:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vgy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 7VGY # _exptl.entry_id 7VGY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 358.175 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-(2-iodo-5-methoxy-1H-indol-3-yl)ethyl]acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VGY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VGY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 100 A CYS 100 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 C SG CYS 126 C CYS 121 1_555 C SG CYS 154 C CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 E SG CYS 159 E CYS 159 1_555 E SG CYS 229 E CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C13 H15 I N2 O2' _chem_comp.formula_weight 358.175 _chem_comp.id ML2 _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-(2-iodo-5-methoxy-1H-indol-3-yl)ethyl]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C16 ML2 sing 312 n n C16 N15 ML2 sing 313 n n C16 O17 ML2 doub 314 n n N15 C14 ML2 sing 315 n n C13 C14 ML2 sing 316 n n C13 C12 ML2 sing 317 n n C12 C2 ML2 doub 318 n y C12 C11 ML2 sing 319 n y I1 C2 ML2 sing 320 n n C2 N3 ML2 sing 321 n y C10 C11 ML2 doub 322 n y C10 C7 ML2 sing 323 n y C11 C4 ML2 sing 324 n y O8 C7 ML2 sing 325 n n O8 C9 ML2 sing 326 n n C7 C6 ML2 doub 327 n y N3 C4 ML2 sing 328 n y C4 C5 ML2 doub 329 n y C6 C5 ML2 sing 330 n y C5 H5 ML2 sing 331 n n C6 H6 ML2 sing 332 n n C9 H91 ML2 sing 333 n n C9 H92 ML2 sing 334 n n C9 H93 ML2 sing 335 n n C13 H131 ML2 sing 336 n n C13 H132 ML2 sing 337 n n N15 H15 ML2 sing 338 n n C18 H181 ML2 sing 339 n n C18 H182 ML2 sing 340 n n C18 H183 ML2 sing 341 n n N3 H3 ML2 sing 342 n n C10 H10 ML2 sing 343 n n C14 H141 ML2 sing 344 n n C14 H142 ML2 sing 345 n n # _atom_sites.entry_id 7VGY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 CLR A 1 401 2 CLR CLR . G 7 ML2 A 1 402 0 ML2 ML2 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 ML2 . . . G 7 131.729 138.232 100.534 1 83.84 ? C2 ML2 402 A 1 HETATM 2 C C4 ML2 . . . G 7 131.969 140.416 100.598 1 83.84 ? C4 ML2 402 A 1 HETATM 3 C C5 ML2 . . . G 7 131.794 141.824 100.533 1 83.84 ? C5 ML2 402 A 1 HETATM 4 C C6 ML2 . . . G 7 132.846 142.668 100.866 1 83.84 ? C6 ML2 402 A 1 HETATM 5 C C9 ML2 . . . G 7 136.361 142.539 101.074 1 83.84 ? C9 ML2 402 A 1 HETATM 6 C C12 ML2 . . . G 7 133.03 138.484 100.946 1 83.84 ? C12 ML2 402 A 1 HETATM 7 C C13 ML2 . . . G 7 134.102 137.455 101.3 1 83.84 ? C13 ML2 402 A 1 HETATM 8 N N15 ML2 . . . G 7 135.29 137.495 99.145 1 83.84 ? N15 ML2 402 A 1 HETATM 9 C C16 ML2 . . . G 7 135.65 136.936 97.857 1 83.84 ? C16 ML2 402 A 1 HETATM 10 C C18 ML2 . . . G 7 136.392 137.778 96.826 1 83.84 ? C18 ML2 402 A 1 HETATM 11 I I1 ML2 . . . G 7 130.872 136.326 100.272 1 83.84 ? I1 ML2 402 A 1 HETATM 12 N N3 ML2 . . . G 7 131.122 139.389 100.332 1 83.84 ? N3 ML2 402 A 1 HETATM 13 C C7 ML2 . . . G 7 134.071 142.13 101.26 1 83.84 ? C7 ML2 402 A 1 HETATM 14 O O8 ML2 . . . G 7 135.137 142.964 101.598 1 83.84 ? O8 ML2 402 A 1 HETATM 15 C C10 ML2 . . . G 7 134.241 140.754 101.324 1 83.84 ? C10 ML2 402 A 1 HETATM 16 C C11 ML2 . . . G 7 133.171 139.894 100.986 1 83.84 ? C11 ML2 402 A 1 HETATM 17 C C14 ML2 . . . G 7 134.584 136.655 100.093 1 83.84 ? C14 ML2 402 A 1 HETATM 18 O O17 ML2 . . . G 7 135.361 135.818 97.605 1 83.84 ? O17 ML2 402 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #