data_7VGZ # _model_server_result.job_id fowdau05dWGPmVB9jaYjig _model_server_result.datetime_utc '2024-11-21 22:22:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vgz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 7VGZ # _exptl.entry_id 7VGZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 259.343 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{2-[(8S)-1,6,7,8-tetrahydro-2H-indeno[5,4-b]furan-8-yl]ethyl}propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VGZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 100 B CYS 100 1_555 A SG CYS 177 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 C SG CYS 126 D CYS 121 1_555 C SG CYS 154 D CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 E SG CYS 159 F CYS 159 1_555 E SG CYS 229 F CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C16 H21 N O2' _chem_comp.formula_weight 259.343 _chem_comp.id JEV _chem_comp.mon_nstd_flag . _chem_comp.name N-{2-[(8S)-1,6,7,8-tetrahydro-2H-indeno[5,4-b]furan-8-yl]ethyl}propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Ramelteon # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C3 JEV doub 248 n n C1 C2 JEV sing 249 n n C3 C2 JEV sing 250 n n C3 N1 JEV sing 251 n n C4 N1 JEV sing 252 n n C4 C5 JEV sing 253 n n C5 C6 JEV sing 254 n n C7 C6 JEV sing 255 n n C7 C8 JEV sing 256 n n C6 C16 JEV sing 257 n n C8 C9 JEV sing 258 n n C16 C9 JEV doub 259 n y C16 C13 JEV sing 260 n y C9 C10 JEV sing 261 n y C13 C14 JEV sing 262 n n C13 C12 JEV doub 263 n y C10 C11 JEV doub 264 n y C14 C15 JEV sing 265 n n C12 C11 JEV sing 266 n y C12 O1 JEV sing 267 n n C15 O1 JEV sing 268 n n C4 H1 JEV sing 269 n n C4 H2 JEV sing 270 n n C2 H3 JEV sing 271 n n C2 H4 JEV sing 272 n n C1 H5 JEV sing 273 n n C1 H6 JEV sing 274 n n C1 H7 JEV sing 275 n n C7 H8 JEV sing 276 n n C7 H9 JEV sing 277 n n C8 H10 JEV sing 278 n n C8 H11 JEV sing 279 n n C10 H12 JEV sing 280 n n C11 H13 JEV sing 281 n n C15 H14 JEV sing 282 n n C15 H15 JEV sing 283 n n C14 H16 JEV sing 284 n n C14 H17 JEV sing 285 n n C6 H18 JEV sing 286 n n C5 H19 JEV sing 287 n n C5 H20 JEV sing 288 n n N1 H21 JEV sing 289 n n # _atom_sites.entry_id 7VGZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 JEV B 1 401 1 JEV JEV . G 7 CLR B 1 402 1 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 JEV . . . F 6 133.78 145.229 93.917 1 120.8 ? C4 JEV 401 B 1 HETATM 2 C C3 JEV . . . F 6 134.704 144.687 91.649 1 120.8 ? C3 JEV 401 B 1 HETATM 3 C C2 JEV . . . F 6 135.465 146.008 91.646 1 120.8 ? C2 JEV 401 B 1 HETATM 4 O O2 JEV . . . F 6 134.79 143.959 90.722 1 120.8 ? O2 JEV 401 B 1 HETATM 5 C C1 JEV . . . F 6 136.461 146.071 90.494 1 120.8 ? C1 JEV 401 B 1 HETATM 6 O O1 JEV . . . F 6 132.937 150.149 97.127 1 120.8 ? O1 JEV 401 B 1 HETATM 7 C C7 JEV . . . F 6 130.323 145.235 94.93 1 120.8 ? C7 JEV 401 B 1 HETATM 8 C C8 JEV . . . F 6 129.31 146.349 95.059 1 120.8 ? C8 JEV 401 B 1 HETATM 9 C C9 JEV . . . F 6 130.071 147.568 95.666 1 120.8 ? C9 JEV 401 B 1 HETATM 10 C C10 JEV . . . F 6 129.623 148.808 96.113 1 120.8 ? C10 JEV 401 B 1 HETATM 11 C C11 JEV . . . F 6 130.525 149.736 96.619 1 120.8 ? C11 JEV 401 B 1 HETATM 12 C C12 JEV . . . F 6 131.94 149.408 96.683 1 120.8 ? C12 JEV 401 B 1 HETATM 13 C C15 JEV . . . F 6 134.11 149.487 97.019 1 120.8 ? C15 JEV 401 B 1 HETATM 14 C C14 JEV . . . F 6 133.811 148.182 96.441 1 120.8 ? C14 JEV 401 B 1 HETATM 15 C C13 JEV . . . F 6 132.373 148.212 96.252 1 120.8 ? C13 JEV 401 B 1 HETATM 16 C C16 JEV . . . F 6 131.442 147.254 95.73 1 120.8 ? C16 JEV 401 B 1 HETATM 17 C C6 JEV . . . F 6 131.669 145.843 95.175 1 120.8 ? C6 JEV 401 B 1 HETATM 18 C C5 JEV . . . F 6 132.432 145.943 93.868 1 120.8 ? C5 JEV 401 B 1 HETATM 19 N N1 JEV . . . F 6 133.88 144.329 92.786 1 120.8 ? N1 JEV 401 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #