data_7VH5
#
_model_server_result.job_id            Dykq5EVAT9VbhIIcSK4A6w 
_model_server_result.datetime_utc      '2024-11-21 13:40:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vh5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"FB","auth_seq_id":1010}' 
#
_entry.id    7VH5 
#
_exptl.entry_id    7VH5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              299.492 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SPHINGOSINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VH5 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VH5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             FB 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C18 H37 N O2' 
_chem_comp.formula_weight    299.492 
_chem_comp.id                SPH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SPHINGOSINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 SPH sing 421 n n 
C1 C2 SPH sing 422 n n 
C1 H11 SPH sing 423 n n 
C1 H12 SPH sing 424 n n 
O1 HO1 SPH sing 425 n n 
C2 N2 SPH sing 426 n n 
C2 C3 SPH sing 427 n n 
C2 H2 SPH sing 428 n n 
N2 HN21 SPH sing 429 n n 
N2 HN22 SPH sing 430 n n 
C3 O3 SPH sing 431 n n 
C3 C4 SPH sing 432 n n 
C3 H3 SPH sing 433 n n 
O3 HO3 SPH sing 434 n n 
C4 C5 SPH doub 435 z n 
C4 H4 SPH sing 436 n n 
C5 C6 SPH sing 437 n n 
C5 H5 SPH sing 438 n n 
C6 C7 SPH sing 439 n n 
C6 H61 SPH sing 440 n n 
C6 H62 SPH sing 441 n n 
C7 C8 SPH sing 442 n n 
C7 H71 SPH sing 443 n n 
C7 H72 SPH sing 444 n n 
C8 C9 SPH sing 445 n n 
C8 H81 SPH sing 446 n n 
C8 H82 SPH sing 447 n n 
C9 C10 SPH sing 448 n n 
C9 H91 SPH sing 449 n n 
C9 H92 SPH sing 450 n n 
C10 C11 SPH sing 451 n n 
C10 H101 SPH sing 452 n n 
C10 H102 SPH sing 453 n n 
C11 C12 SPH sing 454 n n 
C11 H111 SPH sing 455 n n 
C11 H112 SPH sing 456 n n 
C12 C13 SPH sing 457 n n 
C12 H121 SPH sing 458 n n 
C12 H122 SPH sing 459 n n 
C13 C14 SPH sing 460 n n 
C13 H131 SPH sing 461 n n 
C13 H132 SPH sing 462 n n 
C14 C15 SPH sing 463 n n 
C14 H141 SPH sing 464 n n 
C14 H142 SPH sing 465 n n 
C15 C16 SPH sing 466 n n 
C15 H151 SPH sing 467 n n 
C15 H152 SPH sing 468 n n 
C16 C17 SPH sing 469 n n 
C16 H161 SPH sing 470 n n 
C16 H162 SPH sing 471 n n 
C17 C18 SPH sing 472 n n 
C17 H171 SPH sing 473 n n 
C17 H172 SPH sing 474 n n 
C18 H181 SPH sing 475 n n 
C18 H182 SPH sing 476 n n 
C18 H183 SPH sing 477 n n 
#
_atom_sites.entry_id                     7VH5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 POV A 1 1001 1001 POV POV . 
H 2 POV A 1 1002 1002 POV POV . 
I 2 POV A 1 1003 1003 POV POV . 
J 2 POV A 1 1004 1004 POV POV . 
K 2 POV A 1 1005 1005 POV POV . 
L 2 POV A 1 1006 1006 POV POV . 
M 2 POV A 1 1007 1007 POV POV . 
N 2 POV A 1 1008 1008 POV POV . 
O 2 POV B 1 1001 1001 POV POV . 
P 2 POV B 1 1002 1002 POV POV . 
Q 2 POV B 1 1003 1003 POV POV . 
R 2 POV B 1 1004 1004 POV POV . 
S 2 POV B 1 1005 1005 POV POV . 
T 2 POV B 1 1006 1006 POV POV . 
U 2 POV B 1 1007 1007 POV POV . 
V 2 POV B 1 1008 1008 POV POV . 
W 2 POV C 1 1001 1001 POV POV . 
X 2 POV C 1 1002 1002 POV POV . 
Y 2 POV C 1 1003 1003 POV POV . 
Z 2 POV C 1 1004 1004 POV POV . 
AA 2 POV C 1 1005 1005 POV POV . 
BA 2 POV C 1 1006 1006 POV POV . 
CA 2 POV C 1 1007 1007 POV POV . 
DA 2 POV C 1 1008 1008 POV POV . 
EA 2 POV C 1 1009 1009 POV POV . 
FA 2 POV D 1 1001 1001 POV POV . 
GA 2 POV D 1 1002 1002 POV POV . 
HA 2 POV D 1 1003 1003 POV POV . 
IA 2 POV D 1 1004 1004 POV POV . 
JA 2 POV D 1 1005 1005 POV POV . 
KA 2 POV D 1 1006 1006 POV POV . 
LA 2 POV D 1 1007 1007 POV POV . 
MA 2 POV D 1 1008 1008 POV POV . 
NA 2 POV E 1 1001 1001 POV POV . 
OA 2 POV E 1 1002 1002 POV POV . 
PA 2 POV E 1 1003 1003 POV POV . 
QA 2 POV E 1 1004 1004 POV POV . 
RA 2 POV E 1 1005 1005 POV POV . 
SA 2 POV E 1 1006 1006 POV POV . 
TA 2 POV E 1 1007 1007 POV POV . 
UA 2 POV E 1 1008 1008 POV POV . 
VA 2 POV E 1 1009 1009 POV POV . 
WA 2 POV F 1 1001 1001 POV POV . 
XA 2 POV F 1 1002 1002 POV POV . 
YA 2 POV F 1 1003 1003 POV POV . 
ZA 2 POV F 1 1004 1004 POV POV . 
AB 2 POV F 1 1005 1005 POV POV . 
BB 2 POV F 1 1006 1006 POV POV . 
CB 2 POV F 1 1007 1007 POV POV . 
DB 2 POV F 1 1008 1008 POV POV . 
EB 2 POV F 1 1009 1011 POV POV . 
FB 3 SPH F 1 1010 1012 SPH SPH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SPH . . . FB 3 131.376 112.653 160.725 1 19.63 ? C1 SPH 1010 F 1 
HETATM 2 O O1 SPH . . . FB 3 131.745 111.304 160.891 1 19.63 ? O1 SPH 1010 F 1 
HETATM 3 C C2 SPH . . . FB 3 132.077 113.235 159.503 1 19.63 ? C2 SPH 1010 F 1 
HETATM 4 N N2 SPH . . . FB 3 131.263 113.023 158.322 1 19.63 ? N2 SPH 1010 F 1 
HETATM 5 C C3 SPH . . . FB 3 132.345 114.725 159.67 1 19.63 ? C3 SPH 1010 F 1 
HETATM 6 O O3 SPH . . . FB 3 133.046 114.986 160.862 1 19.63 ? O3 SPH 1010 F 1 
HETATM 7 C C4 SPH . . . FB 3 133.109 115.242 158.493 1 19.63 ? C4 SPH 1010 F 1 
HETATM 8 C C5 SPH . . . FB 3 134.089 116.308 158.712 1 19.63 ? C5 SPH 1010 F 1 
HETATM 9 C C6 SPH . . . FB 3 133.639 117.551 159.428 1 19.63 ? C6 SPH 1010 F 1 
HETATM 10 C C7 SPH . . . FB 3 134.864 118.406 159.686 1 19.63 ? C7 SPH 1010 F 1 
HETATM 11 C C8 SPH . . . FB 3 134.823 119.69 158.888 1 19.63 ? C8 SPH 1010 F 1 
HETATM 12 C C9 SPH . . . FB 3 136.057 120.505 159.208 1 19.63 ? C9 SPH 1010 F 1 
HETATM 13 C C10 SPH . . . FB 3 136.04 121.825 158.473 1 19.63 ? C10 SPH 1010 F 1 
HETATM 14 C C11 SPH . . . FB 3 137.383 122.51 158.615 1 19.63 ? C11 SPH 1010 F 1 
HETATM 15 C C12 SPH . . . FB 3 137.233 124.011 158.499 1 19.63 ? C12 SPH 1010 F 1 
HETATM 16 C C13 SPH . . . FB 3 138.581 124.668 158.299 1 19.63 ? C13 SPH 1010 F 1 
HETATM 17 C C14 SPH . . . FB 3 138.419 126.167 158.146 1 19.63 ? C14 SPH 1010 F 1 
HETATM 18 C C15 SPH . . . FB 3 139.765 126.857 158.255 1 19.63 ? C15 SPH 1010 F 1 
HETATM 19 C C16 SPH . . . FB 3 139.696 128.26 157.683 1 19.63 ? C16 SPH 1010 F 1 
HETATM 20 C C17 SPH . . . FB 3 140.814 129.125 158.241 1 19.63 ? C17 SPH 1010 F 1 
HETATM 21 C C18 SPH . . . FB 3 140.981 130.412 157.447 1 19.63 ? C18 SPH 1010 F 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           231 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           21 
#