data_7VIC # _model_server_result.job_id WaRrv2PpjydiE-hGW_1RjQ _model_server_result.datetime_utc '2024-10-15 18:27:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vic # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7VIC # _exptl.entry_id 7VIC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.449 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.14 _cell.angle_gamma 90 _cell.entry_id 7VIC _cell.length_a 52.178 _cell.length_b 81.411 _cell.length_c 91.218 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VIC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 52.178 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H30 O6' _chem_comp.formula_weight 366.449 _chem_comp.id ODN _chem_comp.mon_nstd_flag . _chem_comp.name (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C13 ODN sing 237 n n C13 C12 ODN sing 238 n n C13 C17 ODN sing 239 n n O2 C11 ODN sing 240 n n C12 C11 ODN sing 241 n n C12 C15 ODN sing 242 n n C11 C10 ODN sing 243 n n C15 C16 ODN sing 244 n n C17 O3 ODN doub 245 n n C17 C10 ODN sing 246 n n O4 C18 ODN sing 247 n n C10 C18 ODN sing 248 n n C10 C9 ODN sing 249 n n C16 C9 ODN sing 250 n n C18 O1 ODN sing 251 n n C18 C19 ODN sing 252 n n O1 C8 ODN sing 253 n n C9 C7 ODN sing 254 n n O5 C19 ODN sing 255 n n C8 C7 ODN sing 256 n n C19 C6 ODN sing 257 n n C7 C6 ODN sing 258 n n C7 C ODN sing 259 n n C6 C3 ODN sing 260 n n O C ODN sing 261 n n C C1 ODN sing 262 n n C3 C4 ODN sing 263 n n C3 C5 ODN sing 264 n n C3 C2 ODN sing 265 n n C1 C2 ODN sing 266 n n O4 H1 ODN sing 267 n n C8 H2 ODN sing 268 n n C8 H3 ODN sing 269 n n C19 H4 ODN sing 270 n n O5 H5 ODN sing 271 n n C6 H6 ODN sing 272 n n C5 H7 ODN sing 273 n n C5 H8 ODN sing 274 n n C5 H9 ODN sing 275 n n C4 H10 ODN sing 276 n n C4 H11 ODN sing 277 n n C4 H12 ODN sing 278 n n C2 H13 ODN sing 279 n n C2 H14 ODN sing 280 n n C1 H15 ODN sing 281 n n C1 H16 ODN sing 282 n n C13 H17 ODN sing 283 n n C14 H18 ODN sing 284 n n C14 H19 ODN sing 285 n n C14 H20 ODN sing 286 n n C12 H21 ODN sing 287 n n C11 H22 ODN sing 288 n n O2 H23 ODN sing 289 n n C15 H24 ODN sing 290 n n C15 H25 ODN sing 291 n n C16 H26 ODN sing 292 n n C16 H27 ODN sing 293 n n C9 H28 ODN sing 294 n n C H29 ODN sing 295 n n O H30 ODN sing 296 n n # _atom_sites.entry_id 7VIC _atom_sites.fract_transf_matrix[1][1] 0.019165 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002062 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012283 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ODN A 1 401 401 ODN ODN . C 3 HOH A 1 501 73 HOH HOH . C 3 HOH A 2 502 38 HOH HOH . C 3 HOH A 3 503 50 HOH HOH . C 3 HOH A 4 504 18 HOH HOH . C 3 HOH A 5 505 96 HOH HOH . C 3 HOH A 6 506 74 HOH HOH . C 3 HOH A 7 507 43 HOH HOH . C 3 HOH A 8 508 33 HOH HOH . C 3 HOH A 9 509 7 HOH HOH . C 3 HOH A 10 510 44 HOH HOH . C 3 HOH A 11 511 61 HOH HOH . C 3 HOH A 12 512 24 HOH HOH . C 3 HOH A 13 513 11 HOH HOH . C 3 HOH A 14 514 65 HOH HOH . C 3 HOH A 15 515 57 HOH HOH . C 3 HOH A 16 516 79 HOH HOH . C 3 HOH A 17 517 85 HOH HOH . C 3 HOH A 18 518 72 HOH HOH . C 3 HOH A 19 519 10 HOH HOH . C 3 HOH A 20 520 81 HOH HOH . C 3 HOH A 21 521 98 HOH HOH . C 3 HOH A 22 522 56 HOH HOH . C 3 HOH A 23 523 21 HOH HOH . C 3 HOH A 24 524 5 HOH HOH . C 3 HOH A 25 525 84 HOH HOH . C 3 HOH A 26 526 92 HOH HOH . C 3 HOH A 27 527 42 HOH HOH . C 3 HOH A 28 528 63 HOH HOH . C 3 HOH A 29 529 8 HOH HOH . C 3 HOH A 30 530 40 HOH HOH . C 3 HOH A 31 531 48 HOH HOH . C 3 HOH A 32 532 54 HOH HOH . C 3 HOH A 33 533 89 HOH HOH . C 3 HOH A 34 534 14 HOH HOH . C 3 HOH A 35 535 103 HOH HOH . C 3 HOH A 36 536 88 HOH HOH . C 3 HOH A 37 537 110 HOH HOH . C 3 HOH A 38 538 95 HOH HOH . C 3 HOH A 39 539 41 HOH HOH . C 3 HOH A 40 540 1 HOH HOH . C 3 HOH A 41 541 4 HOH HOH . C 3 HOH A 42 542 36 HOH HOH . C 3 HOH A 43 543 67 HOH HOH . C 3 HOH A 44 544 70 HOH HOH . C 3 HOH A 45 545 113 HOH HOH . C 3 HOH A 46 546 12 HOH HOH . C 3 HOH A 47 547 32 HOH HOH . C 3 HOH A 48 548 91 HOH HOH . C 3 HOH A 49 549 86 HOH HOH . C 3 HOH A 50 550 55 HOH HOH . C 3 HOH A 51 551 76 HOH HOH . C 3 HOH A 52 552 59 HOH HOH . C 3 HOH A 53 553 23 HOH HOH . C 3 HOH A 54 554 53 HOH HOH . C 3 HOH A 55 555 78 HOH HOH . C 3 HOH A 56 556 68 HOH HOH . C 3 HOH A 57 557 13 HOH HOH . C 3 HOH A 58 558 29 HOH HOH . C 3 HOH A 59 559 62 HOH HOH . C 3 HOH A 60 560 6 HOH HOH . C 3 HOH A 61 561 45 HOH HOH . C 3 HOH A 62 562 27 HOH HOH . C 3 HOH A 63 563 9 HOH HOH . C 3 HOH A 64 564 37 HOH HOH . C 3 HOH A 65 565 66 HOH HOH . C 3 HOH A 66 566 49 HOH HOH . C 3 HOH A 67 567 69 HOH HOH . C 3 HOH A 68 568 71 HOH HOH . C 3 HOH A 69 569 64 HOH HOH . C 3 HOH A 70 570 2 HOH HOH . C 3 HOH A 71 571 16 HOH HOH . C 3 HOH A 72 572 52 HOH HOH . C 3 HOH A 73 573 25 HOH HOH . C 3 HOH A 74 574 17 HOH HOH . C 3 HOH A 75 575 15 HOH HOH . C 3 HOH A 76 576 22 HOH HOH . C 3 HOH A 77 577 39 HOH HOH . C 3 HOH A 78 578 97 HOH HOH . C 3 HOH A 79 579 51 HOH HOH . C 3 HOH A 80 580 34 HOH HOH . C 3 HOH A 81 581 28 HOH HOH . C 3 HOH A 82 582 31 HOH HOH . C 3 HOH A 83 583 47 HOH HOH . C 3 HOH A 84 584 35 HOH HOH . C 3 HOH A 85 585 3 HOH HOH . C 3 HOH A 86 586 58 HOH HOH . C 3 HOH A 87 587 94 HOH HOH . C 3 HOH A 88 588 82 HOH HOH . C 3 HOH A 89 589 112 HOH HOH . C 3 HOH A 90 590 99 HOH HOH . C 3 HOH A 91 591 77 HOH HOH . C 3 HOH A 92 592 26 HOH HOH . C 3 HOH A 93 593 109 HOH HOH . C 3 HOH A 94 594 87 HOH HOH . C 3 HOH A 95 595 111 HOH HOH . C 3 HOH A 96 596 93 HOH HOH . C 3 HOH A 97 597 80 HOH HOH . C 3 HOH A 98 598 90 HOH HOH . C 3 HOH A 99 599 75 HOH HOH . C 3 HOH A 100 600 100 HOH HOH . C 3 HOH A 101 601 83 HOH HOH . C 3 HOH A 102 602 60 HOH HOH . C 3 HOH A 103 603 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 ODN . . . B 2 13.841 0.634 17.324 1 71.46 0 O3 ODN 401 A 1 HETATM 2 C C17 ODN . . . B 2 12.668 0.753 17.589 1 70.84 0 C17 ODN 401 A 1 HETATM 3 C C10 ODN . . . B 2 11.878 0.164 18.741 1 70.49 0 C10 ODN 401 A 1 HETATM 4 C C18 ODN . . . B 2 12.638 -0.921 19.534 1 70.27 0 C18 ODN 401 A 1 HETATM 5 O O4 ODN . . . B 2 13.05 -1.973 18.73 1 69.24 0 O4 ODN 401 A 1 HETATM 6 O O1 ODN . . . B 2 11.714 -1.467 20.494 1 69.88 0 O1 ODN 401 A 1 HETATM 7 C C8 ODN . . . B 2 11.177 -0.496 21.42 1 70.12 0 C8 ODN 401 A 1 HETATM 8 C C19 ODN . . . B 2 13.826 -0.407 20.349 1 70.82 0 C19 ODN 401 A 1 HETATM 9 O O5 ODN . . . B 2 14.954 -0.062 19.543 1 70.07 0 O5 ODN 401 A 1 HETATM 10 C C6 ODN . . . B 2 13.379 0.765 21.235 1 71.16 0 C6 ODN 401 A 1 HETATM 11 C C3 ODN . . . B 2 14.104 0.812 22.621 1 71.14 0 C3 ODN 401 A 1 HETATM 12 C C5 ODN . . . B 2 15.621 1.007 22.434 1 71.11 0 C5 ODN 401 A 1 HETATM 13 C C4 ODN . . . B 2 13.903 -0.455 23.477 1 70.27 0 C4 ODN 401 A 1 HETATM 14 C C2 ODN . . . B 2 13.55 2.023 23.375 1 71.51 0 C2 ODN 401 A 1 HETATM 15 C C1 ODN . . . B 2 12.041 1.965 23.543 1 71.43 0 C1 ODN 401 A 1 HETATM 16 C C13 ODN . . . B 2 11.648 1.554 16.8 1 70 0 C13 ODN 401 A 1 HETATM 17 C C14 ODN . . . B 2 11.805 3.055 17.015 1 70.13 0 C14 ODN 401 A 1 HETATM 18 C C12 ODN . . . B 2 10.299 0.925 17.183 1 70.22 0 C12 ODN 401 A 1 HETATM 19 C C11 ODN . . . B 2 10.69 -0.368 17.912 1 70.37 0 C11 ODN 401 A 1 HETATM 20 O O2 ODN . . . B 2 11.128 -1.392 17.023 1 69.61 0 O2 ODN 401 A 1 HETATM 21 C C15 ODN . . . B 2 9.405 1.706 18.13 1 70.54 0 C15 ODN 401 A 1 HETATM 22 C C16 ODN . . . B 2 9.964 1.766 19.553 1 70.47 0 C16 ODN 401 A 1 HETATM 23 C C9 ODN . . . B 2 11.427 1.313 19.737 1 70.82 0 C9 ODN 401 A 1 HETATM 24 C C7 ODN . . . B 2 11.81 0.883 21.198 1 70.9 0 C7 ODN 401 A 1 HETATM 25 C C ODN . . . B 2 11.312 1.939 22.218 1 70.9 0 C ODN 401 A 1 HETATM 26 O O ODN . . . B 2 9.915 1.779 22.518 1 70.73 0 O ODN 401 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #