data_7VID
#
_model_server_result.job_id            EeJTCfLYKtZsGIGxsPBKjw 
_model_server_result.datetime_utc      '2024-11-08 01:44:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vid 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    7VID 
#
_exptl.entry_id    7VID 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VID 
_cell.length_a            142.62 
_cell.length_b            90.18 
_cell.length_c            61.22 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VID 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7VID 
_atom_sites.fract_transf_matrix[1][1]    0.007012 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011089 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016335 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 401 401 GOL GOL . 
D 2 GOL B 1 401 401 GOL GOL . 
E 3 HOH A 1 501 45 HOH HOH . 
E 3 HOH A 2 502 60 HOH HOH . 
E 3 HOH A 3 503 30 HOH HOH . 
E 3 HOH A 4 504 32 HOH HOH . 
E 3 HOH A 5 505 36 HOH HOH . 
E 3 HOH A 6 506 12 HOH HOH . 
E 3 HOH A 7 507 22 HOH HOH . 
E 3 HOH A 8 508 5 HOH HOH . 
E 3 HOH A 9 509 7 HOH HOH . 
E 3 HOH A 10 510 18 HOH HOH . 
E 3 HOH A 11 511 71 HOH HOH . 
E 3 HOH A 12 512 11 HOH HOH . 
E 3 HOH A 13 513 9 HOH HOH . 
E 3 HOH A 14 514 16 HOH HOH . 
E 3 HOH A 15 515 6 HOH HOH . 
E 3 HOH A 16 516 65 HOH HOH . 
E 3 HOH A 17 517 56 HOH HOH . 
E 3 HOH A 18 518 43 HOH HOH . 
E 3 HOH A 19 519 47 HOH HOH . 
E 3 HOH A 20 520 25 HOH HOH . 
E 3 HOH A 21 521 2 HOH HOH . 
E 3 HOH A 22 522 3 HOH HOH . 
E 3 HOH A 23 523 31 HOH HOH . 
E 3 HOH A 24 524 74 HOH HOH . 
E 3 HOH A 25 525 20 HOH HOH . 
E 3 HOH A 26 526 55 HOH HOH . 
E 3 HOH A 27 527 14 HOH HOH . 
E 3 HOH A 28 528 38 HOH HOH . 
E 3 HOH A 29 529 17 HOH HOH . 
E 3 HOH A 30 530 54 HOH HOH . 
E 3 HOH A 31 531 68 HOH HOH . 
E 3 HOH A 32 532 46 HOH HOH . 
E 3 HOH A 33 533 51 HOH HOH . 
E 3 HOH A 34 534 48 HOH HOH . 
E 3 HOH A 35 535 26 HOH HOH . 
E 3 HOH A 36 536 34 HOH HOH . 
E 3 HOH A 37 537 70 HOH HOH . 
E 3 HOH A 38 538 64 HOH HOH . 
E 3 HOH A 39 539 63 HOH HOH . 
E 3 HOH A 40 540 69 HOH HOH . 
F 3 HOH B 1 501 57 HOH HOH . 
F 3 HOH B 2 502 39 HOH HOH . 
F 3 HOH B 3 503 35 HOH HOH . 
F 3 HOH B 4 504 37 HOH HOH . 
F 3 HOH B 5 505 28 HOH HOH . 
F 3 HOH B 6 506 13 HOH HOH . 
F 3 HOH B 7 507 72 HOH HOH . 
F 3 HOH B 8 508 66 HOH HOH . 
F 3 HOH B 9 509 49 HOH HOH . 
F 3 HOH B 10 510 4 HOH HOH . 
F 3 HOH B 11 511 27 HOH HOH . 
F 3 HOH B 12 512 21 HOH HOH . 
F 3 HOH B 13 513 15 HOH HOH . 
F 3 HOH B 14 514 19 HOH HOH . 
F 3 HOH B 15 515 24 HOH HOH . 
F 3 HOH B 16 516 8 HOH HOH . 
F 3 HOH B 17 517 33 HOH HOH . 
F 3 HOH B 18 518 1 HOH HOH . 
F 3 HOH B 19 519 58 HOH HOH . 
F 3 HOH B 20 520 23 HOH HOH . 
F 3 HOH B 21 521 59 HOH HOH . 
F 3 HOH B 22 522 10 HOH HOH . 
F 3 HOH B 23 523 53 HOH HOH . 
F 3 HOH B 24 524 40 HOH HOH . 
F 3 HOH B 25 525 61 HOH HOH . 
F 3 HOH B 26 526 42 HOH HOH . 
F 3 HOH B 27 527 29 HOH HOH . 
F 3 HOH B 28 528 62 HOH HOH . 
F 3 HOH B 29 529 73 HOH HOH . 
F 3 HOH B 30 530 41 HOH HOH . 
F 3 HOH B 31 531 44 HOH HOH . 
F 3 HOH B 32 532 67 HOH HOH . 
F 3 HOH B 33 533 50 HOH HOH . 
F 3 HOH B 34 534 52 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 36.578 40.653 17.094 0.88 52.34 ? C1 GOL 401 A 1 
HETATM 2 O O1 GOL . . . C 2 36.036 41.802 16.518 0.88 59.32 ? O1 GOL 401 A 1 
HETATM 3 C C2 GOL . . . C 2 35.401 39.699 17.43 0.88 58.22 ? C2 GOL 401 A 1 
HETATM 4 O O2 GOL . . . C 2 35.204 39.582 18.803 0.88 59.05 ? O2 GOL 401 A 1 
HETATM 5 C C3 GOL . . . C 2 34.139 40.291 16.701 0.88 56.62 ? C3 GOL 401 A 1 
HETATM 6 O O3 GOL . . . C 2 34.536 40.696 15.424 0.88 55.8 ? O3 GOL 401 A 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           231 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#