data_7VIF # _model_server_result.job_id 28NzwWZ9DwzuTSoBLks9Ww _model_server_result.datetime_utc '2025-02-05 04:46:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 7VIF # _exptl.entry_id 7VIF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 387.451 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{S})-2-azanyl-4-(4-octylphenyl)-2-[[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxymethyl]butan-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VIF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 22 E CYS 22 1_555 C SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 C SG CYS 159 E CYS 159 1_555 C SG CYS 229 E CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 D SG CYS 184 F CYS 184 1_555 D SG CYS 191 F CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 D SG CYS 282 F CYS 282 1_555 D SG CYS 287 F CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C19 H34 N O5 P' _chem_comp.formula_weight 387.451 _chem_comp.id J89 _chem_comp.mon_nstd_flag . _chem_comp.name (2~{S})-2-azanyl-4-(4-octylphenyl)-2-[[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxymethyl]butan-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 P22 J89 sing 171 n n P22 O23 J89 doub 172 n n P22 O24 J89 sing 173 n n P22 O21 J89 sing 174 n n O19 C18 J89 sing 175 n n O21 C20 J89 sing 176 n n C18 C17 J89 sing 177 n n C20 C17 J89 sing 178 n n C17 C16 J89 sing 179 n n C17 N26 J89 sing 180 n n C16 C15 J89 sing 181 n n C11 C10 J89 doub 182 n y C11 C12 J89 sing 183 n y C15 C12 J89 sing 184 n n C10 C09 J89 sing 185 n y C12 C13 J89 doub 186 n y C09 C08 J89 sing 187 n n C09 C14 J89 doub 188 n y C13 C14 J89 sing 189 n y C08 C07 J89 sing 190 n n C07 C06 J89 sing 191 n n C01 C02 J89 sing 192 n n C02 C03 J89 sing 193 n n C06 C05 J89 sing 194 n n C04 C03 J89 sing 195 n n C04 C05 J89 sing 196 n n C01 H1 J89 sing 197 n n C01 H2 J89 sing 198 n n C01 H3 J89 sing 199 n n C02 H4 J89 sing 200 n n C03 H5 J89 sing 201 n n C04 H6 J89 sing 202 n n C04 H7 J89 sing 203 n n C05 H8 J89 sing 204 n n C05 H9 J89 sing 205 n n C06 H10 J89 sing 206 n n C07 H11 J89 sing 207 n n C08 H12 J89 sing 208 n n C08 H13 J89 sing 209 n n C10 H14 J89 sing 210 n n C11 H15 J89 sing 211 n n C13 H16 J89 sing 212 n n C14 H17 J89 sing 213 n n C15 H18 J89 sing 214 n n C16 H19 J89 sing 215 n n C18 H20 J89 sing 216 n n C18 H21 J89 sing 217 n n O19 H22 J89 sing 218 n n C20 H23 J89 sing 219 n n C20 H24 J89 sing 220 n n O24 H26 J89 sing 221 n n N26 H27 J89 sing 222 n n N26 H28 J89 sing 223 n n C02 H30 J89 sing 224 n n C03 H31 J89 sing 225 n n C06 H32 J89 sing 226 n n C07 H33 J89 sing 227 n n C15 H34 J89 sing 228 n n C16 H35 J89 sing 229 n n O25 H25 J89 sing 230 n n # _atom_sites.entry_id 7VIF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id F _pdbx_nonpoly_scheme.entity_id 6 _pdbx_nonpoly_scheme.mon_id J89 _pdbx_nonpoly_scheme.pdb_strand_id F _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id J89 _pdbx_nonpoly_scheme.auth_mon_id XXX _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P22 J89 . . . F 6 131.64 110.967 75.234 1 67.02 ? P22 J89 401 F 1 HETATM 2 C C01 J89 . . . F 6 117.109 113.23 89.394 1 67.02 ? C01 J89 401 F 1 HETATM 3 C C02 J89 . . . F 6 118.352 113.963 88.796 1 67.02 ? C02 J89 401 F 1 HETATM 4 C C03 J89 . . . F 6 119.233 113.03 87.934 1 67.02 ? C03 J89 401 F 1 HETATM 5 C C04 J89 . . . F 6 119.502 113.671 86.561 1 67.02 ? C04 J89 401 F 1 HETATM 6 C C05 J89 . . . F 6 120.517 112.85 85.692 1 67.02 ? C05 J89 401 F 1 HETATM 7 C C06 J89 . . . F 6 121.025 113.646 84.455 1 67.02 ? C06 J89 401 F 1 HETATM 8 C C07 J89 . . . F 6 122.333 113.003 83.882 1 67.02 ? C07 J89 401 F 1 HETATM 9 C C08 J89 . . . F 6 122.455 113.288 82.384 1 67.02 ? C08 J89 401 F 1 HETATM 10 C C09 J89 . . . F 6 123.909 113.16 81.822 1 67.02 ? C09 J89 401 F 1 HETATM 11 C C10 J89 . . . F 6 124.86 112.497 82.519 1 67.02 ? C10 J89 401 F 1 HETATM 12 C C11 J89 . . . F 6 126.136 112.411 81.969 1 67.02 ? C11 J89 401 F 1 HETATM 13 C C12 J89 . . . F 6 126.46 112.959 80.741 1 67.02 ? C12 J89 401 F 1 HETATM 14 C C13 J89 . . . F 6 125.499 113.631 80.047 1 67.02 ? C13 J89 401 F 1 HETATM 15 C C14 J89 . . . F 6 124.229 113.719 80.599 1 67.02 ? C14 J89 401 F 1 HETATM 16 C C15 J89 . . . F 6 127.897 112.822 80.228 1 67.02 ? C15 J89 401 F 1 HETATM 17 C C16 J89 . . . F 6 128.175 112.807 78.709 1 67.02 ? C16 J89 401 F 1 HETATM 18 C C17 J89 . . . F 6 129.581 112.18 78.372 1 67.02 ? C17 J89 401 F 1 HETATM 19 C C18 J89 . . . F 6 130.566 112.924 79.219 1 67.02 ? C18 J89 401 F 1 HETATM 20 O O19 J89 . . . F 6 130.513 112.285 80.497 1 67.02 ? O19 J89 401 F 1 HETATM 21 C C20 J89 . . . F 6 129.957 112.22 76.886 1 67.02 ? C20 J89 401 F 1 HETATM 22 O O21 J89 . . . F 6 130.552 111.009 76.485 1 67.02 ? O21 J89 401 F 1 HETATM 23 O O23 J89 . . . F 6 131.176 111.646 73.944 1 67.02 ? O23 J89 401 F 1 HETATM 24 O O24 J89 . . . F 6 132.031 109.538 74.881 1 67.02 ? O24 J89 401 F 1 HETATM 25 O O25 J89 . . . F 6 132.866 111.711 75.703 1 67.02 ? O25 J89 401 F 1 HETATM 26 N N26 J89 . . . F 6 129.659 110.829 78.791 1 67.02 ? N26 J89 401 F 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #