data_7VIO # _model_server_result.job_id ipSOOHbdInGdjoEN7S_c7g _model_server_result.datetime_utc '2024-12-27 20:07:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vio # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7VIO # _exptl.entry_id 7VIO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VIO _cell.length_a 182.644 _cell.length_b 182.644 _cell.length_c 182.644 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VIO _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 0 0 -182.644 4 'crystal symmetry operation' 4_554 x,-y,-z-1 1 0 0 0 -1 0 0 0 -1 0 0 -182.644 5 'crystal symmetry operation' 13_554 y,x,-z-1 0 1 0 1 0 0 0 0 -1 0 0 -182.644 6 'crystal symmetry operation' 14_554 -y,-x,-z-1 0 -1 0 -1 0 0 0 0 -1 0 0 -182.644 7 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 8 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 9 'crystal symmetry operation' 33_554 y,z+1/2,x-1/2 0 1 0 0 0 1 1 0 0 0 91.322 -91.322 10 'crystal symmetry operation' 34_554 -y,z+1/2,-x-1/2 0 -1 0 0 0 1 -1 0 0 0 91.322 -91.322 11 'crystal symmetry operation' 35_544 y,-z-1/2,-x-1/2 0 1 0 0 0 -1 -1 0 0 0 -91.322 -91.322 12 'crystal symmetry operation' 36_544 -y,-z-1/2,x-1/2 0 -1 0 0 0 -1 1 0 0 0 -91.322 -91.322 13 'crystal symmetry operation' 41_554 x,z+1/2,-y-1/2 1 0 0 0 0 1 0 -1 0 0 91.322 -91.322 14 'crystal symmetry operation' 42_554 -x,z+1/2,y-1/2 -1 0 0 0 0 1 0 1 0 0 91.322 -91.322 15 'crystal symmetry operation' 43_544 -x,-z-1/2,-y-1/2 -1 0 0 0 0 -1 0 -1 0 0 -91.322 -91.322 16 'crystal symmetry operation' 44_544 x,-z-1/2,y-1/2 1 0 0 0 0 -1 0 1 0 0 -91.322 -91.322 17 'crystal symmetry operation' 53_554 z+1/2,x,y-1/2 0 0 1 1 0 0 0 1 0 91.322 0 -91.322 18 'crystal symmetry operation' 54_554 z+1/2,-x,-y-1/2 0 0 1 -1 0 0 0 -1 0 91.322 0 -91.322 19 'crystal symmetry operation' 55_454 -z-1/2,-x,y-1/2 0 0 -1 -1 0 0 0 1 0 -91.322 0 -91.322 20 'crystal symmetry operation' 56_454 -z-1/2,x,-y-1/2 0 0 -1 1 0 0 0 -1 0 -91.322 0 -91.322 21 'crystal symmetry operation' 69_554 z+1/2,y,-x-1/2 0 0 1 0 1 0 -1 0 0 91.322 0 -91.322 22 'crystal symmetry operation' 70_554 z+1/2,-y,x-1/2 0 0 1 0 -1 0 1 0 0 91.322 0 -91.322 23 'crystal symmetry operation' 71_454 -z-1/2,y,x-1/2 0 0 -1 0 1 0 1 0 0 -91.322 0 -91.322 24 'crystal symmetry operation' 72_454 -z-1/2,-y,-x-1/2 0 0 -1 0 -1 0 -1 0 0 -91.322 0 -91.322 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 80 A ASP 80 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc2 A OD1 ASP 80 A ASP 80 1_555 C CD CD . A CD 202 22_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc3 A NE2 GLN 82 A GLN 82 1_555 C CD CD . A CD 202 51_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc4 A OE1 GLU 130 A GLU 130 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc5 A OE1 GLU 130 A GLU 130 1_555 D CD CD . A CD 203 35_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc6 E CD CD . A CD 204 1_555 H O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc7 E CD CD . A CD 204 1_555 H O HOH . A HOH 322 56_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7VIO _atom_sites.fract_transf_matrix[1][1] 0.005475 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005475 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 268 GOL GOL . C 3 CD A 1 202 1 CD CD . D 3 CD A 1 203 2 CD CD . E 3 CD A 1 204 3 CD CD . F 4 SO4 A 1 205 1 SO4 SO4 . G 4 SO4 A 1 206 2 SO4 SO4 . H 5 HOH A 1 301 136 HOH HOH . H 5 HOH A 2 302 259 HOH HOH . H 5 HOH A 3 303 267 HOH HOH . H 5 HOH A 4 304 260 HOH HOH . H 5 HOH A 5 305 83 HOH HOH . H 5 HOH A 6 306 125 HOH HOH . H 5 HOH A 7 307 185 HOH HOH . H 5 HOH A 8 308 262 HOH HOH . H 5 HOH A 9 309 102 HOH HOH . H 5 HOH A 10 310 148 HOH HOH . H 5 HOH A 11 311 25 HOH HOH . H 5 HOH A 12 312 182 HOH HOH . H 5 HOH A 13 313 95 HOH HOH . H 5 HOH A 14 314 73 HOH HOH . H 5 HOH A 15 315 133 HOH HOH . H 5 HOH A 16 316 161 HOH HOH . H 5 HOH A 17 317 123 HOH HOH . H 5 HOH A 18 318 61 HOH HOH . H 5 HOH A 19 319 149 HOH HOH . H 5 HOH A 20 320 224 HOH HOH . H 5 HOH A 21 321 63 HOH HOH . H 5 HOH A 22 322 1 HOH HOH . H 5 HOH A 23 323 265 HOH HOH . H 5 HOH A 24 324 22 HOH HOH . H 5 HOH A 25 325 166 HOH HOH . H 5 HOH A 26 326 127 HOH HOH . H 5 HOH A 27 327 76 HOH HOH . H 5 HOH A 28 328 153 HOH HOH . H 5 HOH A 29 329 40 HOH HOH . H 5 HOH A 30 330 31 HOH HOH . H 5 HOH A 31 331 44 HOH HOH . H 5 HOH A 32 332 75 HOH HOH . H 5 HOH A 33 333 207 HOH HOH . H 5 HOH A 34 334 4 HOH HOH . H 5 HOH A 35 335 117 HOH HOH . H 5 HOH A 36 336 81 HOH HOH . H 5 HOH A 37 337 2 HOH HOH . H 5 HOH A 38 338 70 HOH HOH . H 5 HOH A 39 339 32 HOH HOH . H 5 HOH A 40 340 66 HOH HOH . H 5 HOH A 41 341 115 HOH HOH . H 5 HOH A 42 342 18 HOH HOH . H 5 HOH A 43 343 176 HOH HOH . H 5 HOH A 44 344 246 HOH HOH . H 5 HOH A 45 345 80 HOH HOH . H 5 HOH A 46 346 68 HOH HOH . H 5 HOH A 47 347 46 HOH HOH . H 5 HOH A 48 348 110 HOH HOH . H 5 HOH A 49 349 45 HOH HOH . H 5 HOH A 50 350 74 HOH HOH . H 5 HOH A 51 351 7 HOH HOH . H 5 HOH A 52 352 55 HOH HOH . H 5 HOH A 53 353 121 HOH HOH . H 5 HOH A 54 354 10 HOH HOH . H 5 HOH A 55 355 79 HOH HOH . H 5 HOH A 56 356 41 HOH HOH . H 5 HOH A 57 357 9 HOH HOH . H 5 HOH A 58 358 88 HOH HOH . H 5 HOH A 59 359 12 HOH HOH . H 5 HOH A 60 360 112 HOH HOH . H 5 HOH A 61 361 225 HOH HOH . H 5 HOH A 62 362 19 HOH HOH . H 5 HOH A 63 363 17 HOH HOH . H 5 HOH A 64 364 43 HOH HOH . H 5 HOH A 65 365 39 HOH HOH . H 5 HOH A 66 366 196 HOH HOH . H 5 HOH A 67 367 28 HOH HOH . H 5 HOH A 68 368 14 HOH HOH . H 5 HOH A 69 369 34 HOH HOH . H 5 HOH A 70 370 20 HOH HOH . H 5 HOH A 71 371 156 HOH HOH . H 5 HOH A 72 372 116 HOH HOH . H 5 HOH A 73 373 38 HOH HOH . H 5 HOH A 74 374 27 HOH HOH . H 5 HOH A 75 375 249 HOH HOH . H 5 HOH A 76 376 49 HOH HOH . H 5 HOH A 77 377 16 HOH HOH . H 5 HOH A 78 378 71 HOH HOH . H 5 HOH A 79 379 11 HOH HOH . H 5 HOH A 80 380 184 HOH HOH . H 5 HOH A 81 381 24 HOH HOH . H 5 HOH A 82 382 82 HOH HOH . H 5 HOH A 83 383 247 HOH HOH . H 5 HOH A 84 384 251 HOH HOH . H 5 HOH A 85 385 21 HOH HOH . H 5 HOH A 86 386 91 HOH HOH . H 5 HOH A 87 387 42 HOH HOH . H 5 HOH A 88 388 33 HOH HOH . H 5 HOH A 89 389 54 HOH HOH . H 5 HOH A 90 390 3 HOH HOH . H 5 HOH A 91 391 48 HOH HOH . H 5 HOH A 92 392 250 HOH HOH . H 5 HOH A 93 393 78 HOH HOH . H 5 HOH A 94 394 245 HOH HOH . H 5 HOH A 95 395 58 HOH HOH . H 5 HOH A 96 396 198 HOH HOH . H 5 HOH A 97 397 23 HOH HOH . H 5 HOH A 98 398 35 HOH HOH . H 5 HOH A 99 399 72 HOH HOH . H 5 HOH A 100 400 89 HOH HOH . H 5 HOH A 101 401 138 HOH HOH . H 5 HOH A 102 402 5 HOH HOH . H 5 HOH A 103 403 77 HOH HOH . H 5 HOH A 104 404 26 HOH HOH . H 5 HOH A 105 405 255 HOH HOH . H 5 HOH A 106 406 62 HOH HOH . H 5 HOH A 107 407 65 HOH HOH . H 5 HOH A 108 408 103 HOH HOH . H 5 HOH A 109 409 92 HOH HOH . H 5 HOH A 110 410 186 HOH HOH . H 5 HOH A 111 411 152 HOH HOH . H 5 HOH A 112 412 119 HOH HOH . H 5 HOH A 113 413 238 HOH HOH . H 5 HOH A 114 414 29 HOH HOH . H 5 HOH A 115 415 36 HOH HOH . H 5 HOH A 116 416 105 HOH HOH . H 5 HOH A 117 417 109 HOH HOH . H 5 HOH A 118 418 13 HOH HOH . H 5 HOH A 119 419 64 HOH HOH . H 5 HOH A 120 420 256 HOH HOH . H 5 HOH A 121 421 215 HOH HOH . H 5 HOH A 122 422 164 HOH HOH . H 5 HOH A 123 423 167 HOH HOH . H 5 HOH A 124 424 243 HOH HOH . H 5 HOH A 125 425 94 HOH HOH . H 5 HOH A 126 426 158 HOH HOH . H 5 HOH A 127 427 252 HOH HOH . H 5 HOH A 128 428 264 HOH HOH . H 5 HOH A 129 429 206 HOH HOH . H 5 HOH A 130 430 160 HOH HOH . H 5 HOH A 131 431 239 HOH HOH . H 5 HOH A 132 432 126 HOH HOH . H 5 HOH A 133 433 205 HOH HOH . H 5 HOH A 134 434 101 HOH HOH . H 5 HOH A 135 435 104 HOH HOH . H 5 HOH A 136 436 261 HOH HOH . H 5 HOH A 137 437 85 HOH HOH . H 5 HOH A 138 438 114 HOH HOH . H 5 HOH A 139 439 253 HOH HOH . H 5 HOH A 140 440 258 HOH HOH . H 5 HOH A 141 441 201 HOH HOH . H 5 HOH A 142 442 194 HOH HOH . H 5 HOH A 143 443 231 HOH HOH . H 5 HOH A 144 444 142 HOH HOH . H 5 HOH A 145 445 97 HOH HOH . H 5 HOH A 146 446 120 HOH HOH . H 5 HOH A 147 447 6 HOH HOH . H 5 HOH A 148 448 122 HOH HOH . H 5 HOH A 149 449 240 HOH HOH . H 5 HOH A 150 450 228 HOH HOH . H 5 HOH A 151 451 59 HOH HOH . H 5 HOH A 152 452 47 HOH HOH . H 5 HOH A 153 453 183 HOH HOH . H 5 HOH A 154 454 134 HOH HOH . H 5 HOH A 155 455 84 HOH HOH . H 5 HOH A 156 456 263 HOH HOH . H 5 HOH A 157 457 266 HOH HOH . H 5 HOH A 158 458 227 HOH HOH . H 5 HOH A 159 459 248 HOH HOH . H 5 HOH A 160 460 1 HOH HOH . H 5 HOH A 161 461 53 HOH HOH . H 5 HOH A 162 462 217 HOH HOH . H 5 HOH A 163 463 242 HOH HOH . H 5 HOH A 164 464 124 HOH HOH . H 5 HOH A 165 465 179 HOH HOH . H 5 HOH A 166 466 221 HOH HOH . H 5 HOH A 167 467 144 HOH HOH . H 5 HOH A 168 468 159 HOH HOH . H 5 HOH A 169 469 145 HOH HOH . H 5 HOH A 170 470 181 HOH HOH . H 5 HOH A 171 471 52 HOH HOH . H 5 HOH A 172 472 2 HOH HOH . H 5 HOH A 173 473 171 HOH HOH . H 5 HOH A 174 474 96 HOH HOH . H 5 HOH A 175 475 87 HOH HOH . H 5 HOH A 176 476 173 HOH HOH . H 5 HOH A 177 477 99 HOH HOH . H 5 HOH A 178 478 113 HOH HOH . H 5 HOH A 179 479 111 HOH HOH . H 5 HOH A 180 480 30 HOH HOH . H 5 HOH A 181 481 106 HOH HOH . H 5 HOH A 182 482 93 HOH HOH . H 5 HOH A 183 483 257 HOH HOH . H 5 HOH A 184 484 139 HOH HOH . H 5 HOH A 185 485 86 HOH HOH . H 5 HOH A 186 486 131 HOH HOH . H 5 HOH A 187 487 108 HOH HOH . H 5 HOH A 188 488 150 HOH HOH . H 5 HOH A 189 489 233 HOH HOH . H 5 HOH A 190 490 135 HOH HOH . H 5 HOH A 191 491 235 HOH HOH . H 5 HOH A 192 492 212 HOH HOH . H 5 HOH A 193 493 193 HOH HOH . H 5 HOH A 194 494 154 HOH HOH . H 5 HOH A 195 495 192 HOH HOH . H 5 HOH A 196 496 98 HOH HOH . H 5 HOH A 197 497 143 HOH HOH . H 5 HOH A 198 498 213 HOH HOH . H 5 HOH A 199 499 180 HOH HOH . H 5 HOH A 200 500 199 HOH HOH . H 5 HOH A 201 501 237 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -12.638 10.932 -51.893 1 36.38 0 C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . B 2 -12.681 12.117 -52.694 1 46.35 0 O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . B 2 -12.68 11.255 -50.412 1 29.32 0 C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . B 2 -13.337 12.51 -50.207 1 23.89 0 O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . B 2 -13.388 10.192 -49.597 1 35.67 0 C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . B 2 -12.745 9.929 -48.339 1 33.4 0 O3 GOL 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 6 #