data_7VJ2 # _model_server_result.job_id uAyPms6PGlSqrYjrbmMBwQ _model_server_result.datetime_utc '2024-11-23 04:43:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vj2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1505}' # _entry.id 7VJ2 # _exptl.entry_id 7VJ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VJ2 _cell.length_a 70.85 _cell.length_b 70.85 _cell.length_c 247.21 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VJ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 415 A GLU 397 1_555 F NA NA . A NA 1505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? metalc ? metalc2 A OE1 GLU 415 A GLU 397 1_555 F NA NA . A NA 1505 7_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7VJ2 _atom_sites.fract_transf_matrix[1][1] 0.014114 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 1501 1501 FAD FAD . C 3 SO4 A 1 1502 1502 SO4 SO4 . D 3 SO4 A 1 1503 1503 SO4 SO4 . E 3 SO4 A 1 1504 1504 SO4 SO4 . F 4 NA A 1 1505 1505 NA NA . G 5 HOH A 1 1601 1601 HOH HOH . G 5 HOH A 2 1602 1602 HOH HOH . G 5 HOH A 3 1603 1603 HOH HOH . G 5 HOH A 4 1604 1604 HOH HOH . G 5 HOH A 5 1605 1605 HOH HOH . G 5 HOH A 6 1606 1606 HOH HOH . G 5 HOH A 7 1607 1607 HOH HOH . G 5 HOH A 8 1608 1608 HOH HOH . G 5 HOH A 9 1609 1609 HOH HOH . G 5 HOH A 10 1610 1610 HOH HOH . G 5 HOH A 11 1611 1611 HOH HOH . G 5 HOH A 12 1612 1612 HOH HOH . G 5 HOH A 13 1613 1613 HOH HOH . G 5 HOH A 14 1614 1614 HOH HOH . G 5 HOH A 15 1615 1615 HOH HOH . G 5 HOH A 16 1616 1616 HOH HOH . G 5 HOH A 17 1617 1617 HOH HOH . G 5 HOH A 18 1618 1618 HOH HOH . G 5 HOH A 19 1619 1619 HOH HOH . G 5 HOH A 20 1620 1620 HOH HOH . G 5 HOH A 21 1621 1621 HOH HOH . G 5 HOH A 22 1622 1622 HOH HOH . G 5 HOH A 23 1623 1623 HOH HOH . G 5 HOH A 24 1624 1624 HOH HOH . G 5 HOH A 25 1625 1625 HOH HOH . G 5 HOH A 26 1626 1626 HOH HOH . G 5 HOH A 27 1627 1627 HOH HOH . G 5 HOH A 28 1628 1628 HOH HOH . G 5 HOH A 29 1629 1629 HOH HOH . G 5 HOH A 30 1630 1630 HOH HOH . G 5 HOH A 31 1631 1631 HOH HOH . G 5 HOH A 32 1632 1632 HOH HOH . G 5 HOH A 33 1633 1633 HOH HOH . G 5 HOH A 34 1634 1634 HOH HOH . G 5 HOH A 35 1635 1635 HOH HOH . G 5 HOH A 36 1636 1636 HOH HOH . G 5 HOH A 37 1637 1637 HOH HOH . G 5 HOH A 38 1638 1638 HOH HOH . G 5 HOH A 39 1639 1639 HOH HOH . G 5 HOH A 40 1640 1640 HOH HOH . G 5 HOH A 41 1641 1641 HOH HOH . G 5 HOH A 42 1642 1642 HOH HOH . G 5 HOH A 43 1643 1643 HOH HOH . G 5 HOH A 44 1644 1644 HOH HOH . G 5 HOH A 45 1645 1645 HOH HOH . G 5 HOH A 46 1646 1646 HOH HOH . G 5 HOH A 47 1647 1647 HOH HOH . G 5 HOH A 48 1648 1648 HOH HOH . G 5 HOH A 49 1649 1649 HOH HOH . G 5 HOH A 50 1650 1650 HOH HOH . G 5 HOH A 51 1651 1651 HOH HOH . G 5 HOH A 52 1652 1652 HOH HOH . G 5 HOH A 53 1653 1653 HOH HOH . G 5 HOH A 54 1654 1654 HOH HOH . G 5 HOH A 55 1655 1655 HOH HOH . G 5 HOH A 56 1656 1656 HOH HOH . G 5 HOH A 57 1657 1657 HOH HOH . G 5 HOH A 58 1658 1658 HOH HOH . G 5 HOH A 59 1659 1659 HOH HOH . G 5 HOH A 60 1660 1660 HOH HOH . G 5 HOH A 61 1661 1661 HOH HOH . G 5 HOH A 62 1662 1662 HOH HOH . G 5 HOH A 63 1663 1663 HOH HOH . G 5 HOH A 64 1664 1664 HOH HOH . G 5 HOH A 65 1665 1665 HOH HOH . G 5 HOH A 66 1666 1666 HOH HOH . G 5 HOH A 67 1667 1667 HOH HOH . G 5 HOH A 68 1668 1668 HOH HOH . G 5 HOH A 69 1669 1669 HOH HOH . G 5 HOH A 70 1670 1670 HOH HOH . G 5 HOH A 71 1671 1671 HOH HOH . G 5 HOH A 72 1672 1672 HOH HOH . G 5 HOH A 73 1673 1673 HOH HOH . G 5 HOH A 74 1674 1674 HOH HOH . G 5 HOH A 75 1675 1675 HOH HOH . G 5 HOH A 76 1676 1676 HOH HOH . G 5 HOH A 77 1677 1677 HOH HOH . G 5 HOH A 78 1678 1678 HOH HOH . G 5 HOH A 79 1679 1679 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 28.916 _atom_site.Cartn_y 30.326 _atom_site.Cartn_z 122.252 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 62.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1505 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #