data_7VJ6 # _model_server_result.job_id XFwe6BQmFQVPwKrmcGVhww _model_server_result.datetime_utc '2024-11-23 04:32:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vj6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 7VJ6 # _exptl.entry_id 7VJ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VJ6 _cell.length_a 70.55 _cell.length_b 70.55 _cell.length_c 245.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VJ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 7VJ6 _atom_sites.fract_transf_matrix[1][1] 0.014174 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014174 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 501 SO4 SO4 . C 2 SO4 A 1 502 502 SO4 SO4 . D 3 FAD A 1 503 503 FAD FAD . E 2 SO4 A 1 504 504 SO4 SO4 . F 4 HOH A 1 601 601 HOH HOH . F 4 HOH A 2 602 602 HOH HOH . F 4 HOH A 3 603 603 HOH HOH . F 4 HOH A 4 604 604 HOH HOH . F 4 HOH A 5 605 605 HOH HOH . F 4 HOH A 6 606 606 HOH HOH . F 4 HOH A 7 607 607 HOH HOH . F 4 HOH A 8 608 608 HOH HOH . F 4 HOH A 9 609 609 HOH HOH . F 4 HOH A 10 610 610 HOH HOH . F 4 HOH A 11 611 611 HOH HOH . F 4 HOH A 12 612 612 HOH HOH . F 4 HOH A 13 613 613 HOH HOH . F 4 HOH A 14 614 614 HOH HOH . F 4 HOH A 15 615 615 HOH HOH . F 4 HOH A 16 616 616 HOH HOH . F 4 HOH A 17 617 617 HOH HOH . F 4 HOH A 18 618 618 HOH HOH . F 4 HOH A 19 619 619 HOH HOH . F 4 HOH A 20 620 620 HOH HOH . F 4 HOH A 21 621 621 HOH HOH . F 4 HOH A 22 622 622 HOH HOH . F 4 HOH A 23 623 623 HOH HOH . F 4 HOH A 24 624 624 HOH HOH . F 4 HOH A 25 625 625 HOH HOH . F 4 HOH A 26 626 626 HOH HOH . F 4 HOH A 27 627 627 HOH HOH . F 4 HOH A 28 628 628 HOH HOH . F 4 HOH A 29 629 629 HOH HOH . F 4 HOH A 30 630 630 HOH HOH . F 4 HOH A 31 631 631 HOH HOH . F 4 HOH A 32 632 632 HOH HOH . F 4 HOH A 33 633 633 HOH HOH . F 4 HOH A 34 634 634 HOH HOH . F 4 HOH A 35 635 635 HOH HOH . F 4 HOH A 36 636 636 HOH HOH . F 4 HOH A 37 637 637 HOH HOH . F 4 HOH A 38 638 638 HOH HOH . F 4 HOH A 39 639 639 HOH HOH . F 4 HOH A 40 640 640 HOH HOH . F 4 HOH A 41 641 641 HOH HOH . F 4 HOH A 42 642 642 HOH HOH . F 4 HOH A 43 643 643 HOH HOH . F 4 HOH A 44 644 644 HOH HOH . F 4 HOH A 45 645 645 HOH HOH . F 4 HOH A 46 646 646 HOH HOH . F 4 HOH A 47 647 647 HOH HOH . F 4 HOH A 48 648 648 HOH HOH . F 4 HOH A 49 649 649 HOH HOH . F 4 HOH A 50 650 650 HOH HOH . F 4 HOH A 51 651 651 HOH HOH . F 4 HOH A 52 652 652 HOH HOH . F 4 HOH A 53 653 653 HOH HOH . F 4 HOH A 54 654 654 HOH HOH . F 4 HOH A 55 655 655 HOH HOH . F 4 HOH A 56 656 656 HOH HOH . F 4 HOH A 57 657 657 HOH HOH . F 4 HOH A 58 658 658 HOH HOH . F 4 HOH A 59 659 659 HOH HOH . F 4 HOH A 60 660 660 HOH HOH . F 4 HOH A 61 661 661 HOH HOH . F 4 HOH A 62 662 662 HOH HOH . F 4 HOH A 63 663 663 HOH HOH . F 4 HOH A 64 664 664 HOH HOH . F 4 HOH A 65 665 665 HOH HOH . F 4 HOH A 66 666 666 HOH HOH . F 4 HOH A 67 667 667 HOH HOH . F 4 HOH A 68 668 668 HOH HOH . F 4 HOH A 69 669 669 HOH HOH . F 4 HOH A 70 670 670 HOH HOH . F 4 HOH A 71 671 671 HOH HOH . F 4 HOH A 72 672 672 HOH HOH . F 4 HOH A 73 673 673 HOH HOH . F 4 HOH A 74 674 674 HOH HOH . F 4 HOH A 75 675 675 HOH HOH . F 4 HOH A 76 676 676 HOH HOH . F 4 HOH A 77 677 677 HOH HOH . F 4 HOH A 78 678 678 HOH HOH . F 4 HOH A 79 679 679 HOH HOH . F 4 HOH A 80 680 680 HOH HOH . F 4 HOH A 81 681 681 HOH HOH . F 4 HOH A 82 682 682 HOH HOH . F 4 HOH A 83 683 683 HOH HOH . F 4 HOH A 84 684 684 HOH HOH . F 4 HOH A 85 685 685 HOH HOH . F 4 HOH A 86 686 686 HOH HOH . F 4 HOH A 87 687 687 HOH HOH . F 4 HOH A 88 688 688 HOH HOH . F 4 HOH A 89 689 689 HOH HOH . F 4 HOH A 90 690 690 HOH HOH . F 4 HOH A 91 691 691 HOH HOH . F 4 HOH A 92 692 692 HOH HOH . F 4 HOH A 93 693 693 HOH HOH . F 4 HOH A 94 694 694 HOH HOH . F 4 HOH A 95 695 695 HOH HOH . F 4 HOH A 96 696 696 HOH HOH . F 4 HOH A 97 697 697 HOH HOH . F 4 HOH A 98 698 698 HOH HOH . F 4 HOH A 99 699 699 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . D 3 24.734 23.305 95.385 1 39.56 ? PA FAD 503 A 1 HETATM 2 O O1A FAD . . . D 3 26.063 22.824 95.017 1 44.76 ? O1A FAD 503 A 1 HETATM 3 O O2A FAD . . . D 3 23.9 23.918 94.083 1 32.03 ? O2A FAD 503 A 1 HETATM 4 O O5B FAD . . . D 3 23.826 22.061 96.092 1 41.6 ? O5B FAD 503 A 1 HETATM 5 C C5B FAD . . . D 3 22.391 22.19 96.206 1 32.07 ? C5B FAD 503 A 1 HETATM 6 C C4B FAD . . . D 3 21.982 21.784 97.518 1 39.7 ? C4B FAD 503 A 1 HETATM 7 O O4B FAD . . . D 3 22.588 20.574 97.904 1 31.46 ? O4B FAD 503 A 1 HETATM 8 C C3B FAD . . . D 3 22.352 22.694 98.453 1 33.22 ? C3B FAD 503 A 1 HETATM 9 O O3B FAD . . . D 3 21.475 23.803 98.469 1 29.57 ? O3B FAD 503 A 1 HETATM 10 C C2B FAD . . . D 3 22.341 21.987 99.642 1 35.63 ? C2B FAD 503 A 1 HETATM 11 O O2B FAD . . . D 3 21.021 21.928 100.167 1 28.47 ? O2B FAD 503 A 1 HETATM 12 C C1B FAD . . . D 3 22.764 20.739 99.327 1 34.66 ? C1B FAD 503 A 1 HETATM 13 N N9A FAD . . . D 3 24.089 20.625 99.676 1 33.03 ? N9A FAD 503 A 1 HETATM 14 C C8A FAD . . . D 3 25.033 20.869 98.859 1 28.21 ? C8A FAD 503 A 1 HETATM 15 N N7A FAD . . . D 3 26.191 20.67 99.503 1 32.07 ? N7A FAD 503 A 1 HETATM 16 C C5A FAD . . . D 3 25.888 20.277 100.802 1 29.72 ? C5A FAD 503 A 1 HETATM 17 C C6A FAD . . . D 3 26.596 19.923 101.956 1 30.86 ? C6A FAD 503 A 1 HETATM 18 N N6A FAD . . . D 3 28.049 19.918 101.958 1 27.55 ? N6A FAD 503 A 1 HETATM 19 N N1A FAD . . . D 3 25.938 19.593 103.061 1 30.38 ? N1A FAD 503 A 1 HETATM 20 C C2A FAD . . . D 3 24.61 19.59 103.088 1 30.1 ? C2A FAD 503 A 1 HETATM 21 N N3A FAD . . . D 3 23.877 19.917 102.017 1 34.84 ? N3A FAD 503 A 1 HETATM 22 C C4A FAD . . . D 3 24.46 20.264 100.865 1 32.76 ? C4A FAD 503 A 1 HETATM 23 N N1 FAD . . . D 3 24.401 24.651 103.853 1 21.71 ? N1 FAD 503 A 1 HETATM 24 C C2 FAD . . . D 3 23.317 25.386 104.216 1 25.42 ? C2 FAD 503 A 1 HETATM 25 O O2 FAD . . . D 3 22.135 25.206 103.603 1 22.09 ? O2 FAD 503 A 1 HETATM 26 N N3 FAD . . . D 3 23.407 26.29 105.189 1 35.24 ? N3 FAD 503 A 1 HETATM 27 C C4 FAD . . . D 3 24.546 26.491 105.803 1 25.59 ? C4 FAD 503 A 1 HETATM 28 O O4 FAD . . . D 3 24.603 27.409 106.785 1 28.46 ? O4 FAD 503 A 1 HETATM 29 C C4X FAD . . . D 3 25.698 25.884 105.357 1 21.25 ? C4X FAD 503 A 1 HETATM 30 N N5 FAD . . . D 3 26.758 26.018 106.123 1 19.34 ? N5 FAD 503 A 1 HETATM 31 C C5X FAD . . . D 3 27.806 25.249 105.765 1 22.13 ? C5X FAD 503 A 1 HETATM 32 C C6 FAD . . . D 3 29.003 25.508 106.41 1 24.88 ? C6 FAD 503 A 1 HETATM 33 C C7 FAD . . . D 3 30.144 24.789 106.074 1 26.59 ? C7 FAD 503 A 1 HETATM 34 C C7M FAD . . . D 3 31.455 25.063 106.834 1 30.2 ? C7M FAD 503 A 1 HETATM 35 C C8 FAD . . . D 3 30.087 23.821 105.048 1 22.58 ? C8 FAD 503 A 1 HETATM 36 C C8M FAD . . . D 3 31.361 23.014 104.673 1 25.69 ? C8M FAD 503 A 1 HETATM 37 C C9 FAD . . . D 3 28.897 23.589 104.371 1 29.74 ? C9 FAD 503 A 1 HETATM 38 C C9A FAD . . . D 3 27.739 24.349 104.665 1 27.24 ? C9A FAD 503 A 1 HETATM 39 N N10 FAD . . . D 3 26.651 24.252 103.976 1 23.97 ? N10 FAD 503 A 1 HETATM 40 C C10 FAD . . . D 3 25.619 24.935 104.364 1 19.67 ? C10 FAD 503 A 1 HETATM 41 C C1' FAD . . . D 3 26.478 23.223 102.905 1 28.52 ? C1' FAD 503 A 1 HETATM 42 C C2' FAD . . . D 3 26.84 23.781 101.523 1 28.81 ? C2' FAD 503 A 1 HETATM 43 O O2' FAD . . . D 3 27.92 24.463 101.575 1 23.93 ? O2' FAD 503 A 1 HETATM 44 C C3' FAD . . . D 3 25.83 24.606 100.927 1 32.43 ? C3' FAD 503 A 1 HETATM 45 O O3' FAD . . . D 3 24.64 23.988 100.98 1 27.88 ? O3' FAD 503 A 1 HETATM 46 C C4' FAD . . . D 3 26.056 24.976 99.567 1 26 ? C4' FAD 503 A 1 HETATM 47 O O4' FAD . . . D 3 27.173 25.587 99.377 1 22.79 ? O4' FAD 503 A 1 HETATM 48 C C5' FAD . . . D 3 24.925 25.905 99.241 1 23.86 ? C5' FAD 503 A 1 HETATM 49 O O5' FAD . . . D 3 25.067 26.645 97.995 1 38.54 ? O5' FAD 503 A 1 HETATM 50 P P FAD . . . D 3 24.272 25.99 96.633 1 31.05 ? P FAD 503 A 1 HETATM 51 O O1P FAD . . . D 3 22.835 25.83 96.873 1 31.14 ? O1P FAD 503 A 1 HETATM 52 O O2P FAD . . . D 3 24.538 26.99 95.345 1 38.93 ? O2P FAD 503 A 1 HETATM 53 O O3P FAD . . . D 3 25.032 24.526 96.477 1 28.97 ? O3P FAD 503 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 53 #