data_7VJ7 # _model_server_result.job_id 2lFRJqiisoKxgRQAXGSKNw _model_server_result.datetime_utc '2024-11-08 14:59:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vj7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 7VJ7 # _exptl.entry_id 7VJ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VJ7 _cell.length_a 70.55 _cell.length_b 70.55 _cell.length_c 245.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VJ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 83 n n S1 HS1 DTT sing 84 n n C1 C2 DTT sing 85 n n C1 H11 DTT sing 86 n n C1 H12 DTT sing 87 n n C2 O2 DTT sing 88 n n C2 C3 DTT sing 89 n n C2 H2 DTT sing 90 n n O2 HO2 DTT sing 91 n n C3 O3 DTT sing 92 n n C3 C4 DTT sing 93 n n C3 H3 DTT sing 94 n n O3 HO3 DTT sing 95 n n C4 S4 DTT sing 96 n n C4 H41 DTT sing 97 n n C4 H42 DTT sing 98 n n S4 HS2 DTT sing 99 n n # _atom_sites.entry_id 7VJ7 _atom_sites.fract_transf_matrix[1][1] 0.014174 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014174 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 501 SO4 SO4 . C 2 SO4 A 1 502 502 SO4 SO4 . D 3 DTT A 1 503 503 DTT DTT . E 4 FAD A 1 504 504 FAD FAD . F 2 SO4 A 1 505 505 SO4 SO4 . G 5 HOH A 1 601 601 HOH HOH . G 5 HOH A 2 602 602 HOH HOH . G 5 HOH A 3 603 603 HOH HOH . G 5 HOH A 4 604 604 HOH HOH . G 5 HOH A 5 605 605 HOH HOH . G 5 HOH A 6 606 606 HOH HOH . G 5 HOH A 7 607 607 HOH HOH . G 5 HOH A 8 608 608 HOH HOH . G 5 HOH A 9 609 609 HOH HOH . G 5 HOH A 10 610 610 HOH HOH . G 5 HOH A 11 611 611 HOH HOH . G 5 HOH A 12 612 612 HOH HOH . G 5 HOH A 13 613 613 HOH HOH . G 5 HOH A 14 614 614 HOH HOH . G 5 HOH A 15 615 615 HOH HOH . G 5 HOH A 16 616 616 HOH HOH . G 5 HOH A 17 617 617 HOH HOH . G 5 HOH A 18 618 618 HOH HOH . G 5 HOH A 19 619 619 HOH HOH . G 5 HOH A 20 620 620 HOH HOH . G 5 HOH A 21 621 621 HOH HOH . G 5 HOH A 22 622 622 HOH HOH . G 5 HOH A 23 623 623 HOH HOH . G 5 HOH A 24 624 624 HOH HOH . G 5 HOH A 25 625 625 HOH HOH . G 5 HOH A 26 626 626 HOH HOH . G 5 HOH A 27 627 627 HOH HOH . G 5 HOH A 28 628 628 HOH HOH . G 5 HOH A 29 629 629 HOH HOH . G 5 HOH A 30 630 630 HOH HOH . G 5 HOH A 31 631 631 HOH HOH . G 5 HOH A 32 632 632 HOH HOH . G 5 HOH A 33 633 633 HOH HOH . G 5 HOH A 34 634 634 HOH HOH . G 5 HOH A 35 635 635 HOH HOH . G 5 HOH A 36 636 636 HOH HOH . G 5 HOH A 37 637 637 HOH HOH . G 5 HOH A 38 638 638 HOH HOH . G 5 HOH A 39 639 639 HOH HOH . G 5 HOH A 40 640 640 HOH HOH . G 5 HOH A 41 641 641 HOH HOH . G 5 HOH A 42 642 642 HOH HOH . G 5 HOH A 43 643 643 HOH HOH . G 5 HOH A 44 644 644 HOH HOH . G 5 HOH A 45 645 645 HOH HOH . G 5 HOH A 46 646 646 HOH HOH . G 5 HOH A 47 647 647 HOH HOH . G 5 HOH A 48 648 648 HOH HOH . G 5 HOH A 49 649 649 HOH HOH . G 5 HOH A 50 650 650 HOH HOH . G 5 HOH A 51 651 651 HOH HOH . G 5 HOH A 52 652 652 HOH HOH . G 5 HOH A 53 653 653 HOH HOH . G 5 HOH A 54 654 654 HOH HOH . G 5 HOH A 55 655 655 HOH HOH . G 5 HOH A 56 656 656 HOH HOH . G 5 HOH A 57 657 657 HOH HOH . G 5 HOH A 58 658 658 HOH HOH . G 5 HOH A 59 659 659 HOH HOH . G 5 HOH A 60 660 660 HOH HOH . G 5 HOH A 61 661 661 HOH HOH . G 5 HOH A 62 662 662 HOH HOH . G 5 HOH A 63 663 663 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . D 3 30.167 18.811 104.172 0.52 67.59 ? S1 DTT 503 A 1 HETATM 2 C C1 DTT . . . D 3 31.423 18.936 102.874 0.52 70.69 ? C1 DTT 503 A 1 HETATM 3 C C2 DTT . . . D 3 31.17 17.964 101.728 0.52 73.34 ? C2 DTT 503 A 1 HETATM 4 O O2 DTT . . . D 3 29.971 17.263 101.97 0.52 73.44 ? O2 DTT 503 A 1 HETATM 5 C C3 DTT . . . D 3 32.315 16.968 101.583 0.52 73.11 ? C3 DTT 503 A 1 HETATM 6 O O3 DTT . . . D 3 32.233 16.01 102.613 0.52 73.53 ? O3 DTT 503 A 1 HETATM 7 C C4 DTT . . . D 3 32.272 16.249 100.241 0.52 74.26 ? C4 DTT 503 A 1 HETATM 8 S S4 DTT . . . D 3 33.496 14.918 100.152 0.52 80.69 ? S4 DTT 503 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #