data_7VJ7 # _model_server_result.job_id kJR2TvDWTV4WIcy1Iz1H5g _model_server_result.datetime_utc '2024-11-08 14:35:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vj7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 7VJ7 # _exptl.entry_id 7VJ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VJ7 _cell.length_a 70.55 _cell.length_b 70.55 _cell.length_c 245.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VJ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 100 n n PA O2A FAD sing 101 n n PA O5B FAD sing 102 n n PA O3P FAD sing 103 n n O2A HOA2 FAD sing 104 n n O5B C5B FAD sing 105 n n C5B C4B FAD sing 106 n n C5B H51A FAD sing 107 n n C5B H52A FAD sing 108 n n C4B O4B FAD sing 109 n n C4B C3B FAD sing 110 n n C4B H4B FAD sing 111 n n O4B C1B FAD sing 112 n n C3B O3B FAD sing 113 n n C3B C2B FAD sing 114 n n C3B H3B FAD sing 115 n n O3B HO3A FAD sing 116 n n C2B O2B FAD sing 117 n n C2B C1B FAD sing 118 n n C2B H2B FAD sing 119 n n O2B HO2A FAD sing 120 n n C1B N9A FAD sing 121 n n C1B H1B FAD sing 122 n n N9A C8A FAD sing 123 n y N9A C4A FAD sing 124 n y C8A N7A FAD doub 125 n y C8A H8A FAD sing 126 n n N7A C5A FAD sing 127 n y C5A C6A FAD sing 128 n y C5A C4A FAD doub 129 n y C6A N6A FAD sing 130 n n C6A N1A FAD doub 131 n y N6A H61A FAD sing 132 n n N6A H62A FAD sing 133 n n N1A C2A FAD sing 134 n y C2A N3A FAD doub 135 n y C2A H2A FAD sing 136 n n N3A C4A FAD sing 137 n y N1 C2 FAD sing 138 n n N1 C10 FAD doub 139 n n C2 O2 FAD doub 140 n n C2 N3 FAD sing 141 n n N3 C4 FAD sing 142 n n N3 HN3 FAD sing 143 n n C4 O4 FAD doub 144 n n C4 C4X FAD sing 145 n n C4X N5 FAD doub 146 n n C4X C10 FAD sing 147 n n N5 C5X FAD sing 148 n n C5X C6 FAD doub 149 n y C5X C9A FAD sing 150 n y C6 C7 FAD sing 151 n y C6 H6 FAD sing 152 n n C7 C7M FAD sing 153 n n C7 C8 FAD doub 154 n y C7M HM71 FAD sing 155 n n C7M HM72 FAD sing 156 n n C7M HM73 FAD sing 157 n n C8 C8M FAD sing 158 n n C8 C9 FAD sing 159 n y C8M HM81 FAD sing 160 n n C8M HM82 FAD sing 161 n n C8M HM83 FAD sing 162 n n C9 C9A FAD doub 163 n y C9 H9 FAD sing 164 n n C9A N10 FAD sing 165 n n N10 C10 FAD sing 166 n n N10 C1' FAD sing 167 n n C1' C2' FAD sing 168 n n C1' "H1'1" FAD sing 169 n n C1' "H1'2" FAD sing 170 n n C2' O2' FAD sing 171 n n C2' C3' FAD sing 172 n n C2' H2' FAD sing 173 n n O2' HO2' FAD sing 174 n n C3' O3' FAD sing 175 n n C3' C4' FAD sing 176 n n C3' H3' FAD sing 177 n n O3' HO3' FAD sing 178 n n C4' O4' FAD sing 179 n n C4' C5' FAD sing 180 n n C4' H4' FAD sing 181 n n O4' HO4' FAD sing 182 n n C5' O5' FAD sing 183 n n C5' "H5'1" FAD sing 184 n n C5' "H5'2" FAD sing 185 n n O5' P FAD sing 186 n n P O1P FAD doub 187 n n P O2P FAD sing 188 n n P O3P FAD sing 189 n n O2P HOP2 FAD sing 190 n n # _atom_sites.entry_id 7VJ7 _atom_sites.fract_transf_matrix[1][1] 0.014174 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014174 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 501 SO4 SO4 . C 2 SO4 A 1 502 502 SO4 SO4 . D 3 DTT A 1 503 503 DTT DTT . E 4 FAD A 1 504 504 FAD FAD . F 2 SO4 A 1 505 505 SO4 SO4 . G 5 HOH A 1 601 601 HOH HOH . G 5 HOH A 2 602 602 HOH HOH . G 5 HOH A 3 603 603 HOH HOH . G 5 HOH A 4 604 604 HOH HOH . G 5 HOH A 5 605 605 HOH HOH . G 5 HOH A 6 606 606 HOH HOH . G 5 HOH A 7 607 607 HOH HOH . G 5 HOH A 8 608 608 HOH HOH . G 5 HOH A 9 609 609 HOH HOH . G 5 HOH A 10 610 610 HOH HOH . G 5 HOH A 11 611 611 HOH HOH . G 5 HOH A 12 612 612 HOH HOH . G 5 HOH A 13 613 613 HOH HOH . G 5 HOH A 14 614 614 HOH HOH . G 5 HOH A 15 615 615 HOH HOH . G 5 HOH A 16 616 616 HOH HOH . G 5 HOH A 17 617 617 HOH HOH . G 5 HOH A 18 618 618 HOH HOH . G 5 HOH A 19 619 619 HOH HOH . G 5 HOH A 20 620 620 HOH HOH . G 5 HOH A 21 621 621 HOH HOH . G 5 HOH A 22 622 622 HOH HOH . G 5 HOH A 23 623 623 HOH HOH . G 5 HOH A 24 624 624 HOH HOH . G 5 HOH A 25 625 625 HOH HOH . G 5 HOH A 26 626 626 HOH HOH . G 5 HOH A 27 627 627 HOH HOH . G 5 HOH A 28 628 628 HOH HOH . G 5 HOH A 29 629 629 HOH HOH . G 5 HOH A 30 630 630 HOH HOH . G 5 HOH A 31 631 631 HOH HOH . G 5 HOH A 32 632 632 HOH HOH . G 5 HOH A 33 633 633 HOH HOH . G 5 HOH A 34 634 634 HOH HOH . G 5 HOH A 35 635 635 HOH HOH . G 5 HOH A 36 636 636 HOH HOH . G 5 HOH A 37 637 637 HOH HOH . G 5 HOH A 38 638 638 HOH HOH . G 5 HOH A 39 639 639 HOH HOH . G 5 HOH A 40 640 640 HOH HOH . G 5 HOH A 41 641 641 HOH HOH . G 5 HOH A 42 642 642 HOH HOH . G 5 HOH A 43 643 643 HOH HOH . G 5 HOH A 44 644 644 HOH HOH . G 5 HOH A 45 645 645 HOH HOH . G 5 HOH A 46 646 646 HOH HOH . G 5 HOH A 47 647 647 HOH HOH . G 5 HOH A 48 648 648 HOH HOH . G 5 HOH A 49 649 649 HOH HOH . G 5 HOH A 50 650 650 HOH HOH . G 5 HOH A 51 651 651 HOH HOH . G 5 HOH A 52 652 652 HOH HOH . G 5 HOH A 53 653 653 HOH HOH . G 5 HOH A 54 654 654 HOH HOH . G 5 HOH A 55 655 655 HOH HOH . G 5 HOH A 56 656 656 HOH HOH . G 5 HOH A 57 657 657 HOH HOH . G 5 HOH A 58 658 658 HOH HOH . G 5 HOH A 59 659 659 HOH HOH . G 5 HOH A 60 660 660 HOH HOH . G 5 HOH A 61 661 661 HOH HOH . G 5 HOH A 62 662 662 HOH HOH . G 5 HOH A 63 663 663 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 4 24.676 23.356 95.322 1 53.72 ? PA FAD 504 A 1 HETATM 2 O O1A FAD . . . E 4 25.943 22.827 94.831 1 61.56 ? O1A FAD 504 A 1 HETATM 3 O O2A FAD . . . E 4 23.725 23.941 94.085 1 62.82 ? O2A FAD 504 A 1 HETATM 4 O O5B FAD . . . E 4 23.859 22.106 96.107 1 63.51 ? O5B FAD 504 A 1 HETATM 5 C C5B FAD . . . E 4 22.42 22.16 96.179 1 63.41 ? C5B FAD 504 A 1 HETATM 6 C C4B FAD . . . E 4 22.008 21.729 97.474 1 61.9 ? C4B FAD 504 A 1 HETATM 7 O O4B FAD . . . E 4 22.672 20.547 97.84 1 62.46 ? O4B FAD 504 A 1 HETATM 8 C C3B FAD . . . E 4 22.327 22.64 98.424 1 60.62 ? C3B FAD 504 A 1 HETATM 9 O O3B FAD . . . E 4 21.377 23.678 98.495 1 58.47 ? O3B FAD 504 A 1 HETATM 10 C C2B FAD . . . E 4 22.343 21.908 99.59 1 61.22 ? C2B FAD 504 A 1 HETATM 11 O O2B FAD . . . E 4 21.017 21.777 100.083 1 55.84 ? O2B FAD 504 A 1 HETATM 12 C C1B FAD . . . E 4 22.832 20.689 99.261 1 62.94 ? C1B FAD 504 A 1 HETATM 13 N N9A FAD . . . E 4 24.148 20.58 99.647 1 62.56 ? N9A FAD 504 A 1 HETATM 14 C C8A FAD . . . E 4 25.147 20.862 98.895 1 63.24 ? C8A FAD 504 A 1 HETATM 15 N N7A FAD . . . E 4 26.271 20.64 99.576 1 62.41 ? N7A FAD 504 A 1 HETATM 16 C C5A FAD . . . E 4 25.911 20.189 100.834 1 64.26 ? C5A FAD 504 A 1 HETATM 17 C C6A FAD . . . E 4 26.569 19.789 101.996 1 62.6 ? C6A FAD 504 A 1 HETATM 18 N N6A FAD . . . E 4 28.021 19.789 102.069 1 63.57 ? N6A FAD 504 A 1 HETATM 19 N N1A FAD . . . E 4 25.861 19.406 103.044 1 62.89 ? N1A FAD 504 A 1 HETATM 20 C C2A FAD . . . E 4 24.538 19.394 103.014 1 62.3 ? C2A FAD 504 A 1 HETATM 21 N N3A FAD . . . E 4 23.845 19.764 101.932 1 61.5 ? N3A FAD 504 A 1 HETATM 22 C C4A FAD . . . E 4 24.484 20.163 100.831 1 64.41 ? C4A FAD 504 A 1 HETATM 23 N N1 FAD . . . E 4 24.286 24.438 103.876 1 55.59 ? N1 FAD 504 A 1 HETATM 24 C C2 FAD . . . E 4 23.209 25.09 104.38 1 55.03 ? C2 FAD 504 A 1 HETATM 25 O O2 FAD . . . E 4 21.972 24.805 103.925 1 55.08 ? O2 FAD 504 A 1 HETATM 26 N N3 FAD . . . E 4 23.377 25.996 105.33 1 56.76 ? N3 FAD 504 A 1 HETATM 27 C C4 FAD . . . E 4 24.551 26.288 105.813 1 56.44 ? C4 FAD 504 A 1 HETATM 28 O O4 FAD . . . E 4 24.663 27.232 106.765 1 53.35 ? O4 FAD 504 A 1 HETATM 29 C C4X FAD . . . E 4 25.662 25.667 105.297 1 58.6 ? C4X FAD 504 A 1 HETATM 30 N N5 FAD . . . E 4 26.811 25.99 105.811 1 55.45 ? N5 FAD 504 A 1 HETATM 31 C C5X FAD . . . E 4 27.845 25.185 105.552 1 58.1 ? C5X FAD 504 A 1 HETATM 32 C C6 FAD . . . E 4 28.982 25.339 106.327 1 58.62 ? C6 FAD 504 A 1 HETATM 33 C C7 FAD . . . E 4 30.085 24.515 106.127 1 59.71 ? C7 FAD 504 A 1 HETATM 34 C C7M FAD . . . E 4 31.351 24.706 106.987 1 61.71 ? C7M FAD 504 A 1 HETATM 35 C C8 FAD . . . E 4 30.019 23.512 105.141 1 60.57 ? C8 FAD 504 A 1 HETATM 36 C C8M FAD . . . E 4 31.224 22.567 104.882 1 61.83 ? C8M FAD 504 A 1 HETATM 37 C C9 FAD . . . E 4 28.872 23.344 104.389 1 58.74 ? C9 FAD 504 A 1 HETATM 38 C C9A FAD . . . E 4 27.738 24.191 104.544 1 57.39 ? C9A FAD 504 A 1 HETATM 39 N N10 FAD . . . E 4 26.625 24.081 103.852 1 58.11 ? N10 FAD 504 A 1 HETATM 40 C C10 FAD . . . E 4 25.553 24.708 104.307 1 56.24 ? C10 FAD 504 A 1 HETATM 41 C C1' FAD . . . E 4 26.493 23.123 102.689 1 60.24 ? C1' FAD 504 A 1 HETATM 42 C C2' FAD . . . E 4 26.899 23.833 101.411 1 60.24 ? C2' FAD 504 A 1 HETATM 43 O O2' FAD . . . E 4 27.975 24.479 101.623 1 59.58 ? O2' FAD 504 A 1 HETATM 44 C C3' FAD . . . E 4 25.893 24.74 100.959 1 60.25 ? C3' FAD 504 A 1 HETATM 45 O O3' FAD . . . E 4 24.687 24.184 101.12 1 58.01 ? O3' FAD 504 A 1 HETATM 46 C C4' FAD . . . E 4 25.999 25.119 99.597 1 59.69 ? C4' FAD 504 A 1 HETATM 47 O O4' FAD . . . E 4 27.03 25.851 99.375 1 60.33 ? O4' FAD 504 A 1 HETATM 48 C C5' FAD . . . E 4 24.75 25.893 99.289 1 59.06 ? C5' FAD 504 A 1 HETATM 49 O O5' FAD . . . E 4 24.857 26.682 98.066 1 62.75 ? O5' FAD 504 A 1 HETATM 50 P P FAD . . . E 4 24.183 26.01 96.652 1 53.95 ? P FAD 504 A 1 HETATM 51 O O1P FAD . . . E 4 22.766 25.735 96.851 1 54.84 ? O1P FAD 504 A 1 HETATM 52 O O2P FAD . . . E 4 24.376 27.076 95.402 1 60.64 ? O2P FAD 504 A 1 HETATM 53 O O3P FAD . . . E 4 25.041 24.598 96.396 1 60.48 ? O3P FAD 504 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 53 #