data_7VJL # _model_server_result.job_id eXWXsch30JEnNLmgGnf7LA _model_server_result.datetime_utc '2024-11-09 23:18:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vjl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 7VJL # _exptl.entry_id 7VJL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 452.43 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[5-(aminomethyl)-4-(2-methoxyethylamino)pyridin-2-yl]-7-[2,2,2-tris(fluoranyl)ethanoyl]-3,4-dihydro-2H-1,8-naphthyridine-1-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VJL _cell.length_a 53.37 _cell.length_b 66.785 _cell.length_c 184.174 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VJL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 100 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 552 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id CAK _struct_conn.ptnr2_label_comp_id 7IF _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id 7IF _struct_conn.ptnr2_auth_seq_id 801 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.981 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H23 F3 N6 O3' _chem_comp.formula_weight 452.43 _chem_comp.id 7IF _chem_comp.mon_nstd_flag . _chem_comp.name N-[5-(aminomethyl)-4-(2-methoxyethylamino)pyridin-2-yl]-7-[2,2,2-tris(fluoranyl)ethanoyl]-3,4-dihydro-2H-1,8-naphthyridine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBD CBC 7IF sing 1 n n CBD OBE 7IF sing 2 n n CBC NBB 7IF sing 3 n n OBE CBF 7IF sing 4 n n NBB CAV 7IF sing 5 n n OAR CAQ 7IF doub 6 n n CAI CAH 7IF sing 7 n n CAI NAJ 7IF sing 8 n n CAV CAU 7IF doub 9 n y CAV CAW 7IF sing 10 n y CAH CAG 7IF sing 11 n n CAU CAT 7IF sing 12 n y CAQ NAJ 7IF sing 13 n n CAQ NAS 7IF sing 14 n n NBA CAZ 7IF sing 15 n n CAZ CAW 7IF sing 16 n n CAW CAX 7IF doub 17 n y NAJ CAF 7IF sing 18 n n CAT NAS 7IF sing 19 n n CAT NAY 7IF doub 20 n y CAG CAE 7IF sing 21 n n CAX NAY 7IF sing 22 n y CAF CAE 7IF doub 23 n y CAF NAA 7IF sing 24 n y CAE CAD 7IF sing 25 n y NAA CAB 7IF doub 26 n y CAD CAC 7IF doub 27 n y FAN CAM 7IF sing 28 n n CAB CAC 7IF sing 29 n y CAB CAK 7IF sing 30 n n CAK CAM 7IF sing 31 n n CAK OAL 7IF doub 32 n n CAM FAO 7IF sing 33 n n CAM FAP 7IF sing 34 n n CAC H3 7IF sing 35 n n CAD H4 7IF sing 36 n n CAG H5 7IF sing 37 n n CAG H6 7IF sing 38 n n CAH H7 7IF sing 39 n n CAH H8 7IF sing 40 n n CAI H9 7IF sing 41 n n CAI H10 7IF sing 42 n n NAS H11 7IF sing 43 n n CAU H12 7IF sing 44 n n CAX H13 7IF sing 45 n n CAZ H14 7IF sing 46 n n CAZ H15 7IF sing 47 n n NBA H16 7IF sing 48 n n NBA H17 7IF sing 49 n n NBB H19 7IF sing 50 n n CBC H20 7IF sing 51 n n CBC H21 7IF sing 52 n n CBD H22 7IF sing 53 n n CBD H23 7IF sing 54 n n CBF H24 7IF sing 55 n n CBF H25 7IF sing 56 n n CBF H26 7IF sing 57 n n # _atom_sites.entry_id 7VJL _atom_sites.fract_transf_matrix[1][1] 0.018737 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014973 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00543 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7IF A 1 801 1 7IF LIG . D 2 7IF B 1 801 2 7IF LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F FAN 7IF . . . C 2 -2.419 -12.295 -35.224 1 84.85 ? FAN 7IF 801 A 1 HETATM 2 C CAM 7IF . . . C 2 -2.486 -12.452 -33.905 1 68.68 ? CAM 7IF 801 A 1 HETATM 3 F FAO 7IF . . . C 2 -1.57 -11.625 -33.28 1 58.97 ? FAO 7IF 801 A 1 HETATM 4 F FAP 7IF . . . C 2 -3.75 -12.116 -33.482 1 69.7 ? FAP 7IF 801 A 1 HETATM 5 C CAK 7IF . . . C 2 -2.244 -13.846 -33.593 1 62.26 ? CAK 7IF 801 A 1 HETATM 6 O OAL 7IF . . . C 2 -2.032 -14.71 -34.691 1 72.92 ? OAL 7IF 801 A 1 HETATM 7 C CAB 7IF . . . C 2 -2.932 -14.394 -32.342 1 66.63 ? CAB 7IF 801 A 1 HETATM 8 C CAC 7IF . . . C 2 -3.784 -15.491 -32.566 1 71.99 ? CAC 7IF 801 A 1 HETATM 9 C CAD 7IF . . . C 2 -4.479 -16.033 -31.478 1 80.15 ? CAD 7IF 801 A 1 HETATM 10 N NAA 7IF . . . C 2 -2.81 -13.841 -31.117 1 71.3 ? NAA 7IF 801 A 1 HETATM 11 C CAF 7IF . . . C 2 -3.468 -14.335 -30.016 1 69.68 ? CAF 7IF 801 A 1 HETATM 12 C CAE 7IF . . . C 2 -4.305 -15.424 -30.162 1 75.97 ? CAE 7IF 801 A 1 HETATM 13 C CAG 7IF . . . C 2 -5.006 -15.953 -29.005 1 69 ? CAG 7IF 801 A 1 HETATM 14 C CAH 7IF . . . C 2 -4.807 -15.326 -27.718 1 66.56 ? CAH 7IF 801 A 1 HETATM 15 C CAI 7IF . . . C 2 -3.93 -14.211 -27.653 1 70.75 ? CAI 7IF 801 A 1 HETATM 16 N NAJ 7IF . . . C 2 -3.304 -13.748 -28.73 1 66.16 ? NAJ 7IF 801 A 1 HETATM 17 C CAQ 7IF . . . C 2 -2.471 -12.629 -28.457 1 49.81 ? CAQ 7IF 801 A 1 HETATM 18 O OAR 7IF . . . C 2 -2.435 -12.251 -27.326 1 39.82 ? OAR 7IF 801 A 1 HETATM 19 N NAS 7IF . . . C 2 -1.738 -12.015 -29.433 1 47.13 ? NAS 7IF 801 A 1 HETATM 20 C CAT 7IF . . . C 2 -0.873 -10.877 -29.267 1 47.86 ? CAT 7IF 801 A 1 HETATM 21 C CAU 7IF . . . C 2 -1.02 -9.966 -28.182 1 49.18 ? CAU 7IF 801 A 1 HETATM 22 N NAY 7IF . . . C 2 0.043 -10.692 -30.172 1 51.73 ? NAY 7IF 801 A 1 HETATM 23 C CAX 7IF . . . C 2 0.886 -9.666 -30.122 1 54.57 ? CAX 7IF 801 A 1 HETATM 24 C CAW 7IF . . . C 2 0.833 -8.703 -29.078 1 50.51 ? CAW 7IF 801 A 1 HETATM 25 C CAZ 7IF . . . C 2 1.807 -7.563 -29.068 1 51.63 ? CAZ 7IF 801 A 1 HETATM 26 N NBA 7IF . . . C 2 2.548 -6.705 -29.065 1 57.14 ? NBA 7IF 801 A 1 HETATM 27 C CAV 7IF . . . C 2 -0.141 -8.853 -28.085 1 56.97 ? CAV 7IF 801 A 1 HETATM 28 N NBB 7IF . . . C 2 -0.262 -7.903 -26.964 1 59.59 ? NBB 7IF 801 A 1 HETATM 29 C CBC 7IF . . . C 2 -1.416 -7.169 -26.792 1 58.37 ? CBC 7IF 801 A 1 HETATM 30 C CBD 7IF . . . C 2 -1.146 -5.974 -25.872 1 70.02 ? CBD 7IF 801 A 1 HETATM 31 O OBE 7IF . . . C 2 0.275 -5.727 -25.848 1 77.94 ? OBE 7IF 801 A 1 HETATM 32 C CBF 7IF . . . C 2 0.686 -4.617 -26.633 1 70.13 ? CBF 7IF 801 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #