data_7VKN # _model_server_result.job_id Zmowhmn-LhDqH5BEvmjryw _model_server_result.datetime_utc '2025-02-05 14:00:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vkn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 7VKN # _exptl.entry_id 7VKN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 355.366 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Repotrectinib _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7VKN _cell.length_a 105.417 _cell.length_b 105.417 _cell.length_c 204.988 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VKN _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H18 F N5 O2' _chem_comp.formula_weight 355.366 _chem_comp.id 7GI _chem_comp.mon_nstd_flag . _chem_comp.name Repotrectinib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TPX-0005 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F C7 7GI sing 1 n n C11 C10 7GI sing 2 n n C8 C7 7GI doub 3 n y C8 C9 7GI sing 4 n y C7 C6 7GI sing 5 n y N1 C10 7GI sing 6 n n N1 C17 7GI sing 7 n n C10 C9 7GI sing 8 n n C9 C4 7GI doub 9 n y C6 C5 7GI doub 10 n y C16 C17 7GI sing 11 n y C16 C15 7GI doub 12 n y C17 N4 7GI doub 13 n y C4 C5 7GI sing 14 n y C4 O1 7GI sing 15 n n C15 N2 7GI sing 16 n y O1 C2 7GI sing 17 n n N4 C13 7GI sing 18 n y N2 C13 7GI sing 19 n y N2 N3 7GI sing 20 n y C13 C12 7GI doub 21 n y C2 C3 7GI sing 22 n n C2 C1 7GI sing 23 n n N C1 7GI sing 24 n n N C 7GI sing 25 n n N3 C14 7GI doub 26 n y C12 C 7GI sing 27 n n C12 C14 7GI sing 28 n y C O 7GI doub 29 n n N H1 7GI sing 30 n n C1 H2 7GI sing 31 n n C1 H3 7GI sing 32 n n C2 H4 7GI sing 33 n n C3 H5 7GI sing 34 n n C3 H6 7GI sing 35 n n C3 H7 7GI sing 36 n n C5 H8 7GI sing 37 n n C6 H9 7GI sing 38 n n C8 H10 7GI sing 39 n n C10 H11 7GI sing 40 n n C11 H12 7GI sing 41 n n C11 H13 7GI sing 42 n n C11 H14 7GI sing 43 n n N1 H15 7GI sing 44 n n C14 H16 7GI sing 45 n n C15 H17 7GI sing 46 n n C16 H18 7GI sing 47 n n # _atom_sites.entry_id 7VKN _atom_sites.fract_transf_matrix[1][1] 0.009486 _atom_sites.fract_transf_matrix[1][2] 0.005477 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004878 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7GI A 1 801 1 7GI TPX . C 3 SO4 A 1 802 1 SO4 SO4 . D 3 SO4 A 1 803 2 SO4 SO4 . E 3 SO4 A 1 804 3 SO4 SO4 . F 3 SO4 A 1 805 4 SO4 SO4 . G 3 SO4 A 1 806 5 SO4 SO4 . H 4 HOH A 1 901 5 HOH HOH . H 4 HOH A 2 902 16 HOH HOH . H 4 HOH A 3 903 4 HOH HOH . H 4 HOH A 4 904 8 HOH HOH . H 4 HOH A 5 905 13 HOH HOH . H 4 HOH A 6 906 1 HOH HOH . H 4 HOH A 7 907 10 HOH HOH . H 4 HOH A 8 908 7 HOH HOH . H 4 HOH A 9 909 2 HOH HOH . H 4 HOH A 10 910 3 HOH HOH . H 4 HOH A 11 911 6 HOH HOH . H 4 HOH A 12 912 15 HOH HOH . H 4 HOH A 13 913 9 HOH HOH . H 4 HOH A 14 914 14 HOH HOH . H 4 HOH A 15 915 12 HOH HOH . H 4 HOH A 16 916 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 7GI . . . B 2 -17.29 -43.167 -10.629 1 65.43 ? C 7GI 801 A 1 HETATM 2 O O 7GI . . . B 2 -17.749 -43.326 -9.487 1 65.11 ? O 7GI 801 A 1 HETATM 3 N N 7GI . . . B 2 -17.353 -44.256 -11.524 1 64.75 ? N 7GI 801 A 1 HETATM 4 C C1 7GI . . . B 2 -17.933 -45.52 -11.076 1 59.36 ? C1 7GI 801 A 1 HETATM 5 C C2 7GI . . . B 2 -17.766 -46.551 -12.167 1 57.44 ? C2 7GI 801 A 1 HETATM 6 C C3 7GI . . . B 2 -16.623 -47.469 -11.809 1 64.94 ? C3 7GI 801 A 1 HETATM 7 O O1 7GI . . . B 2 -17.363 -46.028 -13.429 1 55.35 ? O1 7GI 801 A 1 HETATM 8 C C4 7GI . . . B 2 -18.234 -45.433 -14.302 1 53.83 ? C4 7GI 801 A 1 HETATM 9 C C5 7GI . . . B 2 -19.605 -45.591 -14.205 1 52.41 ? C5 7GI 801 A 1 HETATM 10 C C6 7GI . . . B 2 -20.426 -44.968 -15.111 1 56.38 ? C6 7GI 801 A 1 HETATM 11 C C7 7GI . . . B 2 -19.881 -44.171 -16.1 1 58.02 ? C7 7GI 801 A 1 HETATM 12 F F 7GI . . . B 2 -20.758 -43.549 -16.941 1 58.31 ? F 7GI 801 A 1 HETATM 13 C C8 7GI . . . B 2 -18.493 -43.985 -16.191 1 55.51 ? C8 7GI 801 A 1 HETATM 14 C C9 7GI . . . B 2 -17.642 -44.618 -15.296 1 54.78 ? C9 7GI 801 A 1 HETATM 15 C C10 7GI . . . B 2 -16.195 -44.491 -15.365 1 57.25 ? C10 7GI 801 A 1 HETATM 16 C C11 7GI . . . B 2 -15.683 -45.293 -16.547 1 54.25 ? C11 7GI 801 A 1 HETATM 17 N N1 7GI . . . B 2 -15.607 -43.132 -15.45 1 57.35 ? N1 7GI 801 A 1 HETATM 18 C C17 7GI . . . B 2 -15.771 -42.235 -14.438 1 53.59 ? C17 7GI 801 A 1 HETATM 19 N N4 7GI . . . B 2 -16.234 -42.634 -13.251 1 59.59 ? N4 7GI 801 A 1 HETATM 20 C C13 7GI . . . B 2 -16.435 -41.738 -12.287 1 59.7 ? C13 7GI 801 A 1 HETATM 21 C C12 7GI . . . B 2 -16.89 -41.96 -11.067 1 62.97 ? C12 7GI 801 A 1 HETATM 22 C C14 7GI . . . B 2 -16.91 -40.739 -10.514 1 68.77 ? C14 7GI 801 A 1 HETATM 23 N N3 7GI . . . B 2 -16.446 -39.807 -11.371 1 60.58 ? N3 7GI 801 A 1 HETATM 24 N N2 7GI . . . B 2 -16.175 -40.461 -12.475 1 58.51 ? N2 7GI 801 A 1 HETATM 25 C C15 7GI . . . B 2 -15.68 -39.986 -13.675 1 62.53 ? C15 7GI 801 A 1 HETATM 26 C C16 7GI . . . B 2 -15.482 -40.915 -14.69 1 56.69 ? C16 7GI 801 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #