data_7VKO # _model_server_result.job_id lcTCYRDh_ev73Fojen2RBQ _model_server_result.datetime_utc '2024-11-09 23:23:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 7VKO # _exptl.entry_id 7VKO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 355.366 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Repotrectinib _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7VKO _cell.length_a 104.761 _cell.length_b 104.761 _cell.length_c 204.506 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H18 F N5 O2' _chem_comp.formula_weight 355.366 _chem_comp.id 7GI _chem_comp.mon_nstd_flag . _chem_comp.name Repotrectinib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TPX-0005 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F C7 7GI sing 1 n n C11 C10 7GI sing 2 n n C8 C7 7GI doub 3 n y C8 C9 7GI sing 4 n y C7 C6 7GI sing 5 n y N1 C10 7GI sing 6 n n N1 C17 7GI sing 7 n n C10 C9 7GI sing 8 n n C9 C4 7GI doub 9 n y C6 C5 7GI doub 10 n y C16 C17 7GI sing 11 n y C16 C15 7GI doub 12 n y C17 N4 7GI doub 13 n y C4 C5 7GI sing 14 n y C4 O1 7GI sing 15 n n C15 N2 7GI sing 16 n y O1 C2 7GI sing 17 n n N4 C13 7GI sing 18 n y N2 C13 7GI sing 19 n y N2 N3 7GI sing 20 n y C13 C12 7GI doub 21 n y C2 C3 7GI sing 22 n n C2 C1 7GI sing 23 n n N C1 7GI sing 24 n n N C 7GI sing 25 n n N3 C14 7GI doub 26 n y C12 C 7GI sing 27 n n C12 C14 7GI sing 28 n y C O 7GI doub 29 n n N H1 7GI sing 30 n n C1 H2 7GI sing 31 n n C1 H3 7GI sing 32 n n C2 H4 7GI sing 33 n n C3 H5 7GI sing 34 n n C3 H6 7GI sing 35 n n C3 H7 7GI sing 36 n n C5 H8 7GI sing 37 n n C6 H9 7GI sing 38 n n C8 H10 7GI sing 39 n n C10 H11 7GI sing 40 n n C11 H12 7GI sing 41 n n C11 H13 7GI sing 42 n n C11 H14 7GI sing 43 n n N1 H15 7GI sing 44 n n C14 H16 7GI sing 45 n n C15 H17 7GI sing 46 n n C16 H18 7GI sing 47 n n # _atom_sites.entry_id 7VKO _atom_sites.fract_transf_matrix[1][1] 0.009546 _atom_sites.fract_transf_matrix[1][2] 0.005511 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011022 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7GI A 1 801 1 7GI TPX . C 3 SO4 A 1 802 1 SO4 SO4 . D 3 SO4 A 1 803 2 SO4 SO4 . E 3 SO4 A 1 804 3 SO4 SO4 . F 3 SO4 A 1 805 4 SO4 SO4 . G 3 SO4 A 1 806 5 SO4 SO4 . H 4 HOH A 1 901 12 HOH HOH . H 4 HOH A 2 902 11 HOH HOH . H 4 HOH A 3 903 17 HOH HOH . H 4 HOH A 4 904 4 HOH HOH . H 4 HOH A 5 905 1 HOH HOH . H 4 HOH A 6 906 20 HOH HOH . H 4 HOH A 7 907 13 HOH HOH . H 4 HOH A 8 908 3 HOH HOH . H 4 HOH A 9 909 18 HOH HOH . H 4 HOH A 10 910 2 HOH HOH . H 4 HOH A 11 911 7 HOH HOH . H 4 HOH A 12 912 21 HOH HOH . H 4 HOH A 13 913 10 HOH HOH . H 4 HOH A 14 914 22 HOH HOH . H 4 HOH A 15 915 15 HOH HOH . H 4 HOH A 16 916 9 HOH HOH . H 4 HOH A 17 917 8 HOH HOH . H 4 HOH A 18 918 5 HOH HOH . H 4 HOH A 19 919 16 HOH HOH . H 4 HOH A 20 920 6 HOH HOH . H 4 HOH A 21 921 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 7GI . . . B 2 -17.405 -42.773 -10.566 1 78.24 ? C 7GI 801 A 1 HETATM 2 O O 7GI . . . B 2 -18.037 -42.81 -9.495 1 72.92 ? O 7GI 801 A 1 HETATM 3 N N 7GI . . . B 2 -17.504 -43.895 -11.415 1 77.25 ? N 7GI 801 A 1 HETATM 4 C C1 7GI . . . B 2 -18.234 -45.091 -11.008 1 70.24 ? C1 7GI 801 A 1 HETATM 5 C C2 7GI . . . B 2 -17.801 -46.221 -11.898 1 70.97 ? C2 7GI 801 A 1 HETATM 6 C C3 7GI . . . B 2 -16.51 -46.796 -11.35 1 75.12 ? C3 7GI 801 A 1 HETATM 7 O O1 7GI . . . B 2 -17.42 -45.829 -13.175 1 72.12 ? O1 7GI 801 A 1 HETATM 8 C C4 7GI . . . B 2 -18.266 -45.223 -14.062 1 71.33 ? C4 7GI 801 A 1 HETATM 9 C C5 7GI . . . B 2 -19.642 -45.334 -13.965 1 66.46 ? C5 7GI 801 A 1 HETATM 10 C C6 7GI . . . B 2 -20.444 -44.714 -14.896 1 70.61 ? C6 7GI 801 A 1 HETATM 11 C C7 7GI . . . B 2 -19.868 -43.965 -15.912 1 73.36 ? C7 7GI 801 A 1 HETATM 12 F F 7GI . . . B 2 -20.688 -43.33 -16.858 1 68.63 ? F 7GI 801 A 1 HETATM 13 C C8 7GI . . . B 2 -18.479 -43.832 -15.992 1 73.26 ? C8 7GI 801 A 1 HETATM 14 C C9 7GI . . . B 2 -17.638 -44.463 -15.084 1 74.73 ? C9 7GI 801 A 1 HETATM 15 C C10 7GI . . . B 2 -16.184 -44.334 -15.192 1 75.95 ? C10 7GI 801 A 1 HETATM 16 C C11 7GI . . . B 2 -15.583 -45.188 -16.314 1 76.12 ? C11 7GI 801 A 1 HETATM 17 N N1 7GI . . . B 2 -15.672 -42.963 -15.399 1 74.12 ? N1 7GI 801 A 1 HETATM 18 C C17 7GI . . . B 2 -15.816 -42.042 -14.381 1 68.49 ? C17 7GI 801 A 1 HETATM 19 N N4 7GI . . . B 2 -16.298 -42.385 -13.174 1 68.76 ? N4 7GI 801 A 1 HETATM 20 C C13 7GI . . . B 2 -16.47 -41.444 -12.26 1 69.34 ? C13 7GI 801 A 1 HETATM 21 C C12 7GI . . . B 2 -16.927 -41.604 -11.045 1 76.42 ? C12 7GI 801 A 1 HETATM 22 C C14 7GI . . . B 2 -16.912 -40.349 -10.54 1 83.6 ? C14 7GI 801 A 1 HETATM 23 N N3 7GI . . . B 2 -16.442 -39.454 -11.411 1 67.67 ? N3 7GI 801 A 1 HETATM 24 N N2 7GI . . . B 2 -16.182 -40.178 -12.485 1 72.33 ? N2 7GI 801 A 1 HETATM 25 C C15 7GI . . . B 2 -15.663 -39.766 -13.693 1 72.09 ? C15 7GI 801 A 1 HETATM 26 C C16 7GI . . . B 2 -15.475 -40.74 -14.66 1 68.07 ? C16 7GI 801 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #