data_7VKT
#
_model_server_result.job_id            KIPhXG4iXMWg136UObMYTw 
_model_server_result.datetime_utc      '2024-10-11 00:29:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vkt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":405}' 
#
_entry.id    7VKT 
#
_exptl.entry_id    7VKT 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VKT 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VKT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 G N N 
? 7 H N N 
? 7 I N N 
? 7 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 90 A CYS 90 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 E SG CYS 159 E CYS 160 1_555 E SG CYS 229 E CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7VKT 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 LTB A 1 401 401 LTB LTB . 
G 7 Y01 A 1 402 1101 Y01 Y01 . 
H 7 Y01 A 1 403 1201 Y01 Y01 . 
I 7 Y01 A 1 404 1301 Y01 Y01 . 
J 7 Y01 A 1 405 1401 Y01 Y01 . 
K 8 8IO A 1 406 1501 8IO P18 . 
L 9 HOH A 1 501 1 HOH HOH . 
L 9 HOH A 2 502 2 HOH HOH . 
L 9 HOH A 3 503 6 HOH HOH . 
L 9 HOH A 4 504 3 HOH HOH . 
L 9 HOH A 5 505 5 HOH HOH . 
L 9 HOH A 6 506 7 HOH HOH . 
L 9 HOH A 7 507 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . J 7 152.941 126.44 107.866 1 49.76 ? CAA Y01 405 A 1 
HETATM 2 C CBA Y01 . . . J 7 152.03 127.242 108.787 1 49.76 ? CBA Y01 405 A 1 
HETATM 3 C CAB Y01 . . . J 7 152.87 128.07 109.752 1 49.76 ? CAB Y01 405 A 1 
HETATM 4 C CAN Y01 . . . J 7 151.189 126.27 109.612 1 49.76 ? CAN Y01 405 A 1 
HETATM 5 C CAJ Y01 . . . J 7 150.145 127.019 110.42 1 49.76 ? CAJ Y01 405 A 1 
HETATM 6 C CAO Y01 . . . J 7 149.408 126.065 111.356 1 49.76 ? CAO Y01 405 A 1 
HETATM 7 C CBB Y01 . . . J 7 150.2 125.93 112.652 1 49.76 ? CBB Y01 405 A 1 
HETATM 8 C CAC Y01 . . . J 7 150.729 127.299 113.073 1 49.76 ? CAC Y01 405 A 1 
HETATM 9 C CBE Y01 . . . J 7 149.323 125.313 113.758 1 49.76 ? CBE Y01 405 A 1 
HETATM 10 C CAP Y01 . . . J 7 148.338 124.253 113.213 1 49.76 ? CAP Y01 405 A 1 
HETATM 11 C CAQ Y01 . . . J 7 148.459 123.02 114.113 1 49.76 ? CAQ Y01 405 A 1 
HETATM 12 C CBG Y01 . . . J 7 149.033 123.611 115.389 1 49.76 ? CBG Y01 405 A 1 
HETATM 13 C CBI Y01 . . . J 7 150.13 124.54 114.831 1 49.76 ? CBI Y01 405 A 1 
HETATM 14 C CAE Y01 . . . J 7 151.245 123.727 114.161 1 49.76 ? CAE Y01 405 A 1 
HETATM 15 C CAU Y01 . . . J 7 150.67 125.379 115.991 1 49.76 ? CAU Y01 405 A 1 
HETATM 16 C CAS Y01 . . . J 7 151.229 124.45 117.05 1 49.76 ? CAS Y01 405 A 1 
HETATM 17 C CBF Y01 . . . J 7 150.162 123.501 117.578 1 49.76 ? CBF Y01 405 A 1 
HETATM 18 C CBD Y01 . . . J 7 149.603 122.656 116.426 1 49.76 ? CBD Y01 405 A 1 
HETATM 19 C CAK Y01 . . . J 7 148.495 121.739 116.929 1 49.76 ? CAK Y01 405 A 1 
HETATM 20 C CAI Y01 . . . J 7 148.925 120.994 118.136 1 49.76 ? CAI Y01 405 A 1 
HETATM 21 C CAZ Y01 . . . J 7 149.806 121.455 119.002 1 49.76 ? CAZ Y01 405 A 1 
HETATM 22 C CAV Y01 . . . J 7 150.07 120.673 120.254 1 49.76 ? CAV Y01 405 A 1 
HETATM 23 C CBH Y01 . . . J 7 150.726 122.602 118.703 1 49.76 ? CBH Y01 405 A 1 
HETATM 24 C CAD Y01 . . . J 7 152.086 122.034 118.3 1 49.76 ? CAD Y01 405 A 1 
HETATM 25 C CAT Y01 . . . J 7 150.879 123.46 119.96 1 49.76 ? CAT Y01 405 A 1 
HETATM 26 C CAR Y01 . . . J 7 151.317 122.612 121.142 1 49.76 ? CAR Y01 405 A 1 
HETATM 27 C CBC Y01 . . . J 7 150.203 121.621 121.44 1 49.76 ? CBC Y01 405 A 1 
HETATM 28 O OAW Y01 . . . J 7 150.594 120.881 122.575 1 49.76 ? OAW Y01 405 A 1 
HETATM 29 C CAY Y01 . . . J 7 149.605 120.571 123.474 1 49.76 ? CAY Y01 405 A 1 
HETATM 30 O OAG Y01 . . . J 7 148.458 120.844 123.174 1 49.76 ? OAG Y01 405 A 1 
HETATM 31 C CAM Y01 . . . J 7 150.062 119.919 124.747 1 49.76 ? CAM Y01 405 A 1 
HETATM 32 C CAL Y01 . . . J 7 148.842 119.449 125.53 1 49.76 ? CAL Y01 405 A 1 
HETATM 33 C CAX Y01 . . . J 7 149.218 118.461 126.655 1 49.76 ? CAX Y01 405 A 1 
HETATM 34 O OAH Y01 . . . J 7 150.429 118.276 126.863 1 49.76 ? OAH Y01 405 A 1 
HETATM 35 O OAF Y01 . . . J 7 148.27 117.91 127.286 1 49.76 ? OAF Y01 405 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           35 
#