data_7VKT
#
_model_server_result.job_id            7Pi1hmNcYl0VDPYe4FBPqg 
_model_server_result.datetime_utc      '2024-10-11 00:23:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vkt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":406}' 
#
_entry.id    7VKT 
#
_exptl.entry_id    7VKT 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              837.069 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2R)-2-[(Z)-hexadec-9-enoyl]oxy-3-[oxidanyl-[(2S,3R,5R,6S)-2,3,4,5,6-pentakis(oxidanyl)cyclohexyl]oxy-phosphoryl]oxy-propyl] octadecanoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VKT 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VKT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 90 A CYS 90 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 E SG CYS 159 E CYS 160 1_555 E SG CYS 229 E CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
#
_chem_comp.formula           'C43 H81 O13 P' 
_chem_comp.formula_weight    837.069 
_chem_comp.id                8IO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2R)-2-[(Z)-hexadec-9-enoyl]oxy-3-[oxidanyl-[(2S,3R,5R,6S)-2,3,4,5,6-pentakis(oxidanyl)cyclohexyl]oxy-phosphoryl]oxy-propyl] octadecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7VKT 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 LTB A 1 401 401 LTB LTB . 
G 7 Y01 A 1 402 1101 Y01 Y01 . 
H 7 Y01 A 1 403 1201 Y01 Y01 . 
I 7 Y01 A 1 404 1301 Y01 Y01 . 
J 7 Y01 A 1 405 1401 Y01 Y01 . 
K 8 8IO A 1 406 1501 8IO P18 . 
L 9 HOH A 1 501 1 HOH HOH . 
L 9 HOH A 2 502 2 HOH HOH . 
L 9 HOH A 3 503 6 HOH HOH . 
L 9 HOH A 4 504 3 HOH HOH . 
L 9 HOH A 5 505 5 HOH HOH . 
L 9 HOH A 6 506 7 HOH HOH . 
L 9 HOH A 7 507 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 8IO . . . K 8 159.132 138.188 111.108 1 52.12 ? C01 8IO 406 A 1 
HETATM 2 C C02 8IO . . . K 8 160.108 138.607 112.213 1 52.12 ? C02 8IO 406 A 1 
HETATM 3 C C03 8IO . . . K 8 159.453 138.885 113.596 1 52.12 ? C03 8IO 406 A 1 
HETATM 4 C C04 8IO . . . K 8 159.691 140.296 114.196 1 52.12 ? C04 8IO 406 A 1 
HETATM 5 C C05 8IO . . . K 8 159.547 140.46 115.752 1 52.12 ? C05 8IO 406 A 1 
HETATM 6 C C06 8IO . . . K 8 158.417 141.41 116.287 1 52.12 ? C06 8IO 406 A 1 
HETATM 7 C C07 8IO . . . K 8 158.783 142.457 117.414 1 52.12 ? C07 8IO 406 A 1 
HETATM 8 C C08 8IO . . . K 8 157.774 142.612 118.622 1 52.12 ? C08 8IO 406 A 1 
HETATM 9 C C09 8IO . . . K 8 158.224 143.508 119.841 1 52.12 ? C09 8IO 406 A 1 
HETATM 10 C C10 8IO . . . K 8 157.476 143.354 121.231 1 52.12 ? C10 8IO 406 A 1 
HETATM 11 C C11 8IO . . . K 8 155.947 143 121.217 1 52.12 ? C11 8IO 406 A 1 
HETATM 12 C C12 8IO . . . K 8 155.279 142.462 122.547 1 52.12 ? C12 8IO 406 A 1 
HETATM 13 C C13 8IO . . . K 8 153.983 143.158 123.097 1 52.12 ? C13 8IO 406 A 1 
HETATM 14 C C14 8IO . . . K 8 152.782 142.27 123.607 1 52.12 ? C14 8IO 406 A 1 
HETATM 15 C C15 8IO . . . K 8 151.549 143.007 124.286 1 52.12 ? C15 8IO 406 A 1 
HETATM 16 C C16 8IO . . . K 8 151.59 143.241 125.844 1 52.12 ? C16 8IO 406 A 1 
HETATM 17 C C17 8IO . . . K 8 152.992 143.176 126.558 1 52.12 ? C17 8IO 406 A 1 
HETATM 18 C C18 8IO . . . K 8 152.988 143.046 128.115 1 52.12 ? C18 8IO 406 A 1 
HETATM 19 C C21 8IO . . . K 8 152.599 141.451 129.942 1 52.12 ? C21 8IO 406 A 1 
HETATM 20 C C22 8IO . . . K 8 152.271 139.876 129.941 1 52.12 ? C22 8IO 406 A 1 
HETATM 21 C C23 8IO . . . K 8 150.697 139.683 130.169 1 52.12 ? C23 8IO 406 A 1 
HETATM 22 C C29 8IO . . . K 8 150.83 140.131 134.082 1 52.12 ? C29 8IO 406 A 1 
HETATM 23 C C30 8IO . . . K 8 151.063 141.02 135.349 1 52.12 ? C30 8IO 406 A 1 
HETATM 24 C C31 8IO . . . K 8 152.397 140.696 136.118 1 52.12 ? C31 8IO 406 A 1 
HETATM 25 C C32 8IO . . . K 8 153.514 140.091 135.219 1 52.12 ? C32 8IO 406 A 1 
HETATM 26 C C33 8IO . . . K 8 153.024 138.732 134.634 1 52.12 ? C33 8IO 406 A 1 
HETATM 27 C C34 8IO . . . K 8 151.523 138.742 134.2 1 52.12 ? C34 8IO 406 A 1 
HETATM 28 C C41 8IO . . . K 8 154.39 139.729 131.25 1 52.12 ? C41 8IO 406 A 1 
HETATM 29 C C43 8IO . . . K 8 155.622 139.226 130.422 1 52.12 ? C43 8IO 406 A 1 
HETATM 30 C C44 8IO . . . K 8 155.572 137.711 129.99 1 52.12 ? C44 8IO 406 A 1 
HETATM 31 C C45 8IO . . . K 8 156.917 136.907 129.803 1 52.12 ? C45 8IO 406 A 1 
HETATM 32 C C46 8IO . . . K 8 157.169 136.243 128.412 1 52.12 ? C46 8IO 406 A 1 
HETATM 33 C C47 8IO . . . K 8 157.115 134.687 128.282 1 52.12 ? C47 8IO 406 A 1 
HETATM 34 C C48 8IO . . . K 8 158.374 133.96 127.72 1 52.12 ? C48 8IO 406 A 1 
HETATM 35 C C49 8IO . . . K 8 159.121 133.016 128.684 1 52.12 ? C49 8IO 406 A 1 
HETATM 36 C C50 8IO . . . K 8 159.945 131.961 128.015 1 52.12 ? C50 8IO 406 A 1 
HETATM 37 C C51 8IO . . . K 8 161.281 131.993 128.227 1 52.12 ? C51 8IO 406 A 1 
HETATM 38 C C52 8IO . . . K 8 162.034 132.977 129.061 1 52.12 ? C52 8IO 406 A 1 
HETATM 39 C C53 8IO . . . K 8 163.343 132.473 129.745 1 52.12 ? C53 8IO 406 A 1 
HETATM 40 C C54 8IO . . . K 8 164.27 131.624 128.826 1 52.12 ? C54 8IO 406 A 1 
HETATM 41 C C55 8IO . . . K 8 165.225 130.622 129.536 1 52.12 ? C55 8IO 406 A 1 
HETATM 42 C C56 8IO . . . K 8 166.365 130.029 128.668 1 52.12 ? C56 8IO 406 A 1 
HETATM 43 C C57 8IO . . . K 8 166.886 128.661 129.129 1 52.12 ? C57 8IO 406 A 1 
HETATM 44 O O19 8IO . . . K 8 153.69 143.751 128.809 1 52.12 ? O19 8IO 406 A 1 
HETATM 45 O O20 8IO . . . K 8 152.175 142.107 128.717 1 52.12 ? O20 8IO 406 A 1 
HETATM 46 O O24 8IO . . . K 8 150.174 140.509 131.128 1 52.12 ? O24 8IO 406 A 1 
HETATM 47 O O26 8IO . . . K 8 148.215 138.942 131.717 1 52.12 ? O26 8IO 406 A 1 
HETATM 48 O O27 8IO . . . K 8 148.093 141.487 132.276 1 52.12 ? O27 8IO 406 A 1 
HETATM 49 O O28 8IO . . . K 8 149.503 139.987 133.797 1 52.12 ? O28 8IO 406 A 1 
HETATM 50 O O35 8IO . . . K 8 151.517 138.279 132.883 1 52.12 ? O35 8IO 406 A 1 
HETATM 51 O O36 8IO . . . K 8 153.213 137.744 135.608 1 52.12 ? O36 8IO 406 A 1 
HETATM 52 O O37 8IO . . . K 8 153.836 140.968 134.175 1 52.12 ? O37 8IO 406 A 1 
HETATM 53 O O38 8IO . . . K 8 152.905 141.867 136.698 1 52.12 ? O38 8IO 406 A 1 
HETATM 54 O O39 8IO . . . K 8 150.028 140.771 136.247 1 52.12 ? O39 8IO 406 A 1 
HETATM 55 O O40 8IO . . . K 8 153.09 139.253 130.99 1 52.12 ? O40 8IO 406 A 1 
HETATM 56 O O42 8IO . . . K 8 154.554 140.529 132.133 1 52.12 ? O42 8IO 406 A 1 
HETATM 57 P P25 8IO . . . K 8 148.841 140.161 132.203 1 52.12 ? P25 8IO 406 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           57 
#