data_7VLO
#
_model_server_result.job_id            8GRwJZNp3fdSYa6--OON1Q 
_model_server_result.datetime_utc      '2024-11-21 08:59:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vlo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    7VLO 
#
_exptl.entry_id    7VLO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              501.542 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         91.921 
_cell.angle_beta          102.421 
_cell.angle_gamma         108.764 
_cell.entry_id            7VLO 
_cell.length_a            55.464 
_cell.length_b            60.461 
_cell.length_c            68.137 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VLO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C23 H34 F3 N5 O4' 
_chem_comp.formula_weight    501.542 
_chem_comp.id                4WI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PF-07321332, bound form;nirmatrelvir, bound form;Paxlovid, bound form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C8 4WI doub 1 n n 
C8 N2 4WI sing 2 n n 
C8 C5 4WI sing 3 n n 
N2 C7 4WI sing 4 n n 
C4 C5 4WI sing 5 n n 
C4 C2 4WI sing 6 n n 
C5 C6 4WI sing 7 n n 
N5 C3 4WI doub 8 n n 
C3 C2 4WI sing 9 n n 
C7 C6 4WI sing 10 n n 
C2 N1 4WI sing 11 n n 
N1 C1 4WI sing 12 n n 
F1 C22 4WI sing 13 n n 
O3 C13 4WI doub 14 n n 
C1 C9 4WI sing 15 n n 
C1 O2 4WI doub 16 n n 
F3 C22 4WI sing 17 n n 
C23 C15 4WI sing 18 n n 
C22 F2 4WI sing 19 n n 
C22 C21 4WI sing 20 n n 
C9 N3 4WI sing 21 n n 
C9 C12 4WI sing 22 n n 
C13 N3 4WI sing 23 n n 
C13 C14 4WI sing 24 n n 
N4 C21 4WI sing 25 n n 
N4 C14 4WI sing 26 n n 
C19 C18 4WI sing 27 n n 
N3 C10 4WI sing 28 n n 
C21 O4 4WI doub 29 n n 
C12 C18 4WI sing 30 n n 
C12 C11 4WI sing 31 n n 
C14 C15 4WI sing 32 n n 
C15 C17 4WI sing 33 n n 
C15 C16 4WI sing 34 n n 
C18 C20 4WI sing 35 n n 
C18 C11 4WI sing 36 n n 
C10 C11 4WI sing 37 n n 
C3 H33 4WI sing 38 n n 
C6 H5 4WI sing 39 n n 
C6 H6 4WI sing 40 n n 
C7 H7 4WI sing 41 n n 
C7 H8 4WI sing 42 n n 
C10 H11 4WI sing 43 n n 
C10 H12 4WI sing 44 n n 
C5 H4 4WI sing 45 n n 
C9 H10 4WI sing 46 n n 
C11 H13 4WI sing 47 n n 
C12 H14 4WI sing 48 n n 
C19 H23 4WI sing 49 n n 
C19 H24 4WI sing 50 n n 
C19 H25 4WI sing 51 n n 
C20 H26 4WI sing 52 n n 
C20 H27 4WI sing 53 n n 
C20 H28 4WI sing 54 n n 
C16 H17 4WI sing 55 n n 
C16 H19 4WI sing 56 n n 
C16 H18 4WI sing 57 n n 
C17 H20 4WI sing 58 n n 
C17 H21 4WI sing 59 n n 
C17 H22 4WI sing 60 n n 
C23 H29 4WI sing 61 n n 
C23 H30 4WI sing 62 n n 
C23 H31 4WI sing 63 n n 
C4 H2 4WI sing 64 n n 
C4 H3 4WI sing 65 n n 
C2 H32 4WI sing 66 n n 
C14 H15 4WI sing 67 n n 
N5 H36 4WI sing 68 n n 
N2 H9 4WI sing 69 n n 
N1 H1 4WI sing 70 n n 
N4 H16 4WI sing 71 n n 
#
_atom_sites.entry_id                     7VLO 
_atom_sites.fract_transf_matrix[1][1]    0.01803 
_atom_sites.fract_transf_matrix[1][2]    0.006125 
_atom_sites.fract_transf_matrix[1][3]    0.00468 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017468 
_atom_sites.fract_transf_matrix[2][3]    0.001952 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015122 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 4WI A 1 401 5 4WI 9I7 . 
D 2 4WI B 1 401 6 4WI 9I7 . 
E 3 HOH A 1 501 58 HOH HOH . 
E 3 HOH A 2 502 16 HOH HOH . 
E 3 HOH A 3 503 54 HOH HOH . 
E 3 HOH A 4 504 19 HOH HOH . 
E 3 HOH A 5 505 10 HOH HOH . 
E 3 HOH A 6 506 15 HOH HOH . 
E 3 HOH A 7 507 23 HOH HOH . 
E 3 HOH A 8 508 46 HOH HOH . 
E 3 HOH A 9 509 36 HOH HOH . 
E 3 HOH A 10 510 1 HOH HOH . 
E 3 HOH A 11 511 57 HOH HOH . 
E 3 HOH A 12 512 2 HOH HOH . 
E 3 HOH A 13 513 25 HOH HOH . 
E 3 HOH A 14 514 34 HOH HOH . 
E 3 HOH A 15 515 12 HOH HOH . 
E 3 HOH A 16 516 8 HOH HOH . 
E 3 HOH A 17 517 3 HOH HOH . 
E 3 HOH A 18 518 47 HOH HOH . 
E 3 HOH A 19 519 18 HOH HOH . 
E 3 HOH A 20 520 13 HOH HOH . 
E 3 HOH A 21 521 37 HOH HOH . 
E 3 HOH A 22 522 17 HOH HOH . 
E 3 HOH A 23 523 5 HOH HOH . 
E 3 HOH A 24 524 33 HOH HOH . 
E 3 HOH A 25 525 9 HOH HOH . 
E 3 HOH A 26 526 45 HOH HOH . 
E 3 HOH A 27 527 42 HOH HOH . 
E 3 HOH A 28 528 50 HOH HOH . 
E 3 HOH A 29 529 59 HOH HOH . 
E 3 HOH A 30 530 64 HOH HOH . 
E 3 HOH A 31 531 51 HOH HOH . 
E 3 HOH A 32 532 6 HOH HOH . 
E 3 HOH A 33 533 41 HOH HOH . 
E 3 HOH A 34 534 67 HOH HOH . 
E 3 HOH A 35 535 62 HOH HOH . 
F 3 HOH B 1 501 14 HOH HOH . 
F 3 HOH B 2 502 52 HOH HOH . 
F 3 HOH B 3 503 30 HOH HOH . 
F 3 HOH B 4 504 56 HOH HOH . 
F 3 HOH B 5 505 44 HOH HOH . 
F 3 HOH B 6 506 39 HOH HOH . 
F 3 HOH B 7 507 7 HOH HOH . 
F 3 HOH B 8 508 20 HOH HOH . 
F 3 HOH B 9 509 40 HOH HOH . 
F 3 HOH B 10 510 53 HOH HOH . 
F 3 HOH B 11 511 61 HOH HOH . 
F 3 HOH B 12 512 21 HOH HOH . 
F 3 HOH B 13 513 28 HOH HOH . 
F 3 HOH B 14 514 4 HOH HOH . 
F 3 HOH B 15 515 22 HOH HOH . 
F 3 HOH B 16 516 24 HOH HOH . 
F 3 HOH B 17 517 32 HOH HOH . 
F 3 HOH B 18 518 11 HOH HOH . 
F 3 HOH B 19 519 38 HOH HOH . 
F 3 HOH B 20 520 49 HOH HOH . 
F 3 HOH B 21 521 35 HOH HOH . 
F 3 HOH B 22 522 31 HOH HOH . 
F 3 HOH B 23 523 55 HOH HOH . 
F 3 HOH B 24 524 26 HOH HOH . 
F 3 HOH B 25 525 43 HOH HOH . 
F 3 HOH B 26 526 48 HOH HOH . 
F 3 HOH B 27 527 27 HOH HOH . 
F 3 HOH B 28 528 65 HOH HOH . 
F 3 HOH B 29 529 60 HOH HOH . 
F 3 HOH B 30 530 66 HOH HOH . 
F 3 HOH B 31 531 29 HOH HOH . 
F 3 HOH B 32 532 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 4WI . . . D 2 38.69 -58.292 24.107 1 43.09 ? C8 4WI 401 B 1 
HETATM 2 C C3 4WI . . . D 2 38.432 -56.314 28.582 1 34.96 ? C3 4WI 401 B 1 
HETATM 3 C C1 4WI . . . D 2 35.872 -58.624 28.152 1 40.23 ? C1 4WI 401 B 1 
HETATM 4 C C13 4WI . . . D 2 34.085 -60.363 26.247 1 43.44 ? C13 4WI 401 B 1 
HETATM 5 C C21 4WI . . . D 2 31.307 -61.601 24.685 1 50.75 ? C21 4WI 401 B 1 
HETATM 6 C C6 4WI . . . D 2 38.823 -59.872 25.981 1 39.61 ? C6 4WI 401 B 1 
HETATM 7 C C7 4WI . . . D 2 39.271 -60.599 25.018 1 44.81 ? C7 4WI 401 B 1 
HETATM 8 C C10 4WI . . . D 2 33.205 -60.68 28.664 1 42.77 ? C10 4WI 401 B 1 
HETATM 9 C C5 4WI . . . D 2 38.16 -58.445 25.301 1 37.25 ? C5 4WI 401 B 1 
HETATM 10 C C9 4WI . . . D 2 34.347 -58.707 28.095 1 40.58 ? C9 4WI 401 B 1 
HETATM 11 C C11 4WI . . . D 2 32.702 -59.602 29.598 1 39.16 ? C11 4WI 401 B 1 
HETATM 12 C C12 4WI . . . D 2 33.423 -58.339 29.218 1 44.52 ? C12 4WI 401 B 1 
HETATM 13 C C18 4WI . . . D 2 31.959 -58.304 29.508 1 42.38 ? C18 4WI 401 B 1 
HETATM 14 C C19 4WI . . . D 2 31.601 -57.593 30.816 1 40.85 ? C19 4WI 401 B 1 
HETATM 15 C C20 4WI . . . D 2 31.04 -58.169 28.265 1 43.98 ? C20 4WI 401 B 1 
HETATM 16 C C16 4WI . . . D 2 34.041 -64.105 25.17 1 40.45 ? C16 4WI 401 B 1 
HETATM 17 C C17 4WI . . . D 2 35.585 -62.888 26.754 1 43.2 ? C17 4WI 401 B 1 
HETATM 18 C C23 4WI . . . D 2 35.574 -62.267 24.31 1 37.66 ? C23 4WI 401 B 1 
HETATM 19 C C4 4WI . . . D 2 38.563 -57.272 26.248 1 40.15 ? C4 4WI 401 B 1 
HETATM 20 C C2 4WI . . . D 2 38.024 -57.464 27.69 1 37.3 ? C2 4WI 401 B 1 
HETATM 21 C C14 4WI . . . D 2 33.551 -61.725 25.79 1 40.98 ? C14 4WI 401 B 1 
HETATM 22 C C22 4WI . . . D 2 30.508 -61.325 23.408 1 50.13 ? C22 4WI 401 B 1 
HETATM 23 C C15 4WI . . . D 2 34.686 -62.732 25.503 1 42.31 ? C15 4WI 401 B 1 
HETATM 24 N N5 4WI . . . D 2 39.527 -56.379 29.202 1 38.51 ? N5 4WI 401 B 1 
HETATM 25 N N2 4WI . . . D 2 39.482 -59.657 23.755 1 39.26 ? N2 4WI 401 B 1 
HETATM 26 N N3 4WI . . . D 2 33.853 -59.94 27.632 1 42.68 ? N3 4WI 401 B 1 
HETATM 27 N N1 4WI . . . D 2 36.583 -57.455 27.614 1 40.32 ? N1 4WI 401 B 1 
HETATM 28 N N4 4WI . . . D 2 32.768 -61.485 24.61 1 42.07 ? N4 4WI 401 B 1 
HETATM 29 O O1 4WI . . . D 2 38.622 -57.346 23.382 1 36.22 ? O1 4WI 401 B 1 
HETATM 30 O O2 4WI . . . D 2 36.447 -59.545 28.615 1 42.84 ? O2 4WI 401 B 1 
HETATM 31 O O3 4WI . . . D 2 34.653 -59.615 25.506 1 41.87 ? O3 4WI 401 B 1 
HETATM 32 O O4 4WI . . . D 2 30.749 -61.892 25.699 1 48.53 ? O4 4WI 401 B 1 
HETATM 33 F F1 4WI . . . D 2 31.007 -60.173 22.868 1 51.35 ? F1 4WI 401 B 1 
HETATM 34 F F2 4WI . . . D 2 30.647 -62.358 22.521 1 53.74 ? F2 4WI 401 B 1 
HETATM 35 F F3 4WI . . . D 2 29.198 -61.153 23.744 1 55.42 ? F3 4WI 401 B 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           35 
#