data_7VM6 # _model_server_result.job_id KclMlWir6Q4wDIkSVuA-EA _model_server_result.datetime_utc '2024-11-06 20:48:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vm6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7VM6 # _exptl.entry_id 7VM6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.21 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-oxidanylnaphthalene-2-carboximidamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7VM6 _cell.length_a 120.435 _cell.length_b 120.435 _cell.length_c 42.637 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 U CYS 42 1_555 A SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 39 U CYS 50 1_555 A SG CYS 110 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 135 U CYS 136 1_555 A SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 A SG CYS 167 U CYS 168 1_555 A SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 A SG CYS 194 U CYS 191 1_555 A SG CYS 222 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? # _chem_comp.formula 'C11 H10 N2 O' _chem_comp.formula_weight 186.21 _chem_comp.id 7R8 _chem_comp.mon_nstd_flag . _chem_comp.name 6-oxidanylnaphthalene-2-carboximidamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C10 7R8 doub 1 n y C9 C8 7R8 sing 2 n y C10 C6 7R8 sing 3 n y O1 C8 7R8 sing 4 n n C8 C7 7R8 doub 5 n y N2 C11 7R8 doub 6 n n C6 C1 7R8 doub 7 n y C6 C5 7R8 sing 8 n y C1 C2 7R8 sing 9 n y C11 C2 7R8 sing 10 n n C11 N1 7R8 sing 11 n n C7 C5 7R8 sing 12 n y C5 C4 7R8 doub 13 n y C2 C3 7R8 doub 14 n y C3 C4 7R8 sing 15 n y C4 H1 7R8 sing 16 n n C3 H2 7R8 sing 17 n n C1 H3 7R8 sing 18 n n O1 H4 7R8 sing 19 n n C10 H5 7R8 sing 20 n n C9 H6 7R8 sing 21 n n C7 H7 7R8 sing 22 n n N2 H8 7R8 sing 23 n n N1 H9 7R8 sing 24 n n N1 H10 7R8 sing 25 n n # _atom_sites.entry_id 7VM6 _atom_sites.fract_transf_matrix[1][1] 0.008303 _atom_sites.fract_transf_matrix[1][2] 0.004794 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009588 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7R8 U 1 301 1 7R8 RES . C 3 SO4 U 1 302 1 SO4 SO4 . D 4 PGE U 1 303 5115 PGE PG6 . E 5 HOH U 1 401 87 HOH HOH . E 5 HOH U 2 402 84 HOH HOH . E 5 HOH U 3 403 119 HOH HOH . E 5 HOH U 4 404 78 HOH HOH . E 5 HOH U 5 405 68 HOH HOH . E 5 HOH U 6 406 103 HOH HOH . E 5 HOH U 7 407 14 HOH HOH . E 5 HOH U 8 408 97 HOH HOH . E 5 HOH U 9 409 120 HOH HOH . E 5 HOH U 10 410 90 HOH HOH . E 5 HOH U 11 411 101 HOH HOH . E 5 HOH U 12 412 21 HOH HOH . E 5 HOH U 13 413 59 HOH HOH . E 5 HOH U 14 414 107 HOH HOH . E 5 HOH U 15 415 126 HOH HOH . E 5 HOH U 16 416 105 HOH HOH . E 5 HOH U 17 417 121 HOH HOH . E 5 HOH U 18 418 95 HOH HOH . E 5 HOH U 19 419 81 HOH HOH . E 5 HOH U 20 420 26 HOH HOH . E 5 HOH U 21 421 10 HOH HOH . E 5 HOH U 22 422 11 HOH HOH . E 5 HOH U 23 423 23 HOH HOH . E 5 HOH U 24 424 43 HOH HOH . E 5 HOH U 25 425 40 HOH HOH . E 5 HOH U 26 426 133 HOH HOH . E 5 HOH U 27 427 86 HOH HOH . E 5 HOH U 28 428 47 HOH HOH . E 5 HOH U 29 429 117 HOH HOH . E 5 HOH U 30 430 18 HOH HOH . E 5 HOH U 31 431 52 HOH HOH . E 5 HOH U 32 432 51 HOH HOH . E 5 HOH U 33 433 74 HOH HOH . E 5 HOH U 34 434 25 HOH HOH . E 5 HOH U 35 435 32 HOH HOH . E 5 HOH U 36 436 106 HOH HOH . E 5 HOH U 37 437 35 HOH HOH . E 5 HOH U 38 438 57 HOH HOH . E 5 HOH U 39 439 127 HOH HOH . E 5 HOH U 40 440 85 HOH HOH . E 5 HOH U 41 441 110 HOH HOH . E 5 HOH U 42 442 5 HOH HOH . E 5 HOH U 43 443 17 HOH HOH . E 5 HOH U 44 444 24 HOH HOH . E 5 HOH U 45 445 62 HOH HOH . E 5 HOH U 46 446 28 HOH HOH . E 5 HOH U 47 447 122 HOH HOH . E 5 HOH U 48 448 67 HOH HOH . E 5 HOH U 49 449 55 HOH HOH . E 5 HOH U 50 450 71 HOH HOH . E 5 HOH U 51 451 1 HOH HOH . E 5 HOH U 52 452 66 HOH HOH . E 5 HOH U 53 453 49 HOH HOH . E 5 HOH U 54 454 94 HOH HOH . E 5 HOH U 55 455 13 HOH HOH . E 5 HOH U 56 456 70 HOH HOH . E 5 HOH U 57 457 141 HOH HOH . E 5 HOH U 58 458 80 HOH HOH . E 5 HOH U 59 459 30 HOH HOH . E 5 HOH U 60 460 56 HOH HOH . E 5 HOH U 61 461 22 HOH HOH . E 5 HOH U 62 462 15 HOH HOH . E 5 HOH U 63 463 111 HOH HOH . E 5 HOH U 64 464 48 HOH HOH . E 5 HOH U 65 465 93 HOH HOH . E 5 HOH U 66 466 45 HOH HOH . E 5 HOH U 67 467 88 HOH HOH . E 5 HOH U 68 468 16 HOH HOH . E 5 HOH U 69 469 99 HOH HOH . E 5 HOH U 70 470 118 HOH HOH . E 5 HOH U 71 471 3 HOH HOH . E 5 HOH U 72 472 2 HOH HOH . E 5 HOH U 73 473 58 HOH HOH . E 5 HOH U 74 474 79 HOH HOH . E 5 HOH U 75 475 100 HOH HOH . E 5 HOH U 76 476 9 HOH HOH . E 5 HOH U 77 477 37 HOH HOH . E 5 HOH U 78 478 96 HOH HOH . E 5 HOH U 79 479 61 HOH HOH . E 5 HOH U 80 480 53 HOH HOH . E 5 HOH U 81 481 7 HOH HOH . E 5 HOH U 82 482 64 HOH HOH . E 5 HOH U 83 483 145 HOH HOH . E 5 HOH U 84 484 12 HOH HOH . E 5 HOH U 85 485 27 HOH HOH . E 5 HOH U 86 486 113 HOH HOH . E 5 HOH U 87 487 8 HOH HOH . E 5 HOH U 88 488 50 HOH HOH . E 5 HOH U 89 489 31 HOH HOH . E 5 HOH U 90 490 124 HOH HOH . E 5 HOH U 91 491 116 HOH HOH . E 5 HOH U 92 492 72 HOH HOH . E 5 HOH U 93 493 34 HOH HOH . E 5 HOH U 94 494 63 HOH HOH . E 5 HOH U 95 495 39 HOH HOH . E 5 HOH U 96 496 33 HOH HOH . E 5 HOH U 97 497 20 HOH HOH . E 5 HOH U 98 498 42 HOH HOH . E 5 HOH U 99 499 65 HOH HOH . E 5 HOH U 100 500 92 HOH HOH . E 5 HOH U 101 501 76 HOH HOH . E 5 HOH U 102 502 4 HOH HOH . E 5 HOH U 103 503 44 HOH HOH . E 5 HOH U 104 504 129 HOH HOH . E 5 HOH U 105 505 89 HOH HOH . E 5 HOH U 106 506 6 HOH HOH . E 5 HOH U 107 507 104 HOH HOH . E 5 HOH U 108 508 125 HOH HOH . E 5 HOH U 109 509 108 HOH HOH . E 5 HOH U 110 510 36 HOH HOH . E 5 HOH U 111 511 29 HOH HOH . E 5 HOH U 112 512 75 HOH HOH . E 5 HOH U 113 513 135 HOH HOH . E 5 HOH U 114 514 41 HOH HOH . E 5 HOH U 115 515 142 HOH HOH . E 5 HOH U 116 516 109 HOH HOH . E 5 HOH U 117 517 38 HOH HOH . E 5 HOH U 118 518 146 HOH HOH . E 5 HOH U 119 519 98 HOH HOH . E 5 HOH U 120 520 60 HOH HOH . E 5 HOH U 121 521 91 HOH HOH . E 5 HOH U 122 522 83 HOH HOH . E 5 HOH U 123 523 54 HOH HOH . E 5 HOH U 124 524 149 HOH HOH . E 5 HOH U 125 525 102 HOH HOH . E 5 HOH U 126 526 19 HOH HOH . E 5 HOH U 127 527 123 HOH HOH . E 5 HOH U 128 528 131 HOH HOH . E 5 HOH U 129 529 130 HOH HOH . E 5 HOH U 130 530 69 HOH HOH . E 5 HOH U 131 531 114 HOH HOH . E 5 HOH U 132 532 73 HOH HOH . E 5 HOH U 133 533 128 HOH HOH . E 5 HOH U 134 534 46 HOH HOH . E 5 HOH U 135 535 112 HOH HOH . E 5 HOH U 136 536 164 HOH HOH . E 5 HOH U 137 537 115 HOH HOH . E 5 HOH U 138 538 82 HOH HOH . E 5 HOH U 139 539 77 HOH HOH . E 5 HOH U 140 540 165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 7R8 . . . B 2 -29.427 17.711 -9.616 1 21.34 ? C4 7R8 301 U 1 HETATM 2 C C3 7R8 . . . B 2 -30.483 18.624 -9.629 1 19.68 ? C3 7R8 301 U 1 HETATM 3 C C2 7R8 . . . B 2 -30.907 19.232 -10.821 1 20.61 ? C2 7R8 301 U 1 HETATM 4 C C1 7R8 . . . B 2 -30.253 18.892 -11.997 1 21.56 ? C1 7R8 301 U 1 HETATM 5 O O1 7R8 . . . B 2 -26.068 15.315 -12.159 1 22.65 ? O1 7R8 301 U 1 HETATM 6 C C6 7R8 . . . B 2 -29.206 17.993 -12.011 1 21.37 ? C6 7R8 301 U 1 HETATM 7 C C10 7R8 . . . B 2 -28.608 17.697 -13.232 1 21.46 ? C10 7R8 301 U 1 HETATM 8 C C9 7R8 . . . B 2 -27.562 16.784 -13.265 1 23.01 ? C9 7R8 301 U 1 HETATM 9 C C8 7R8 . . . B 2 -27.108 16.2 -12.091 1 22.6 ? C8 7R8 301 U 1 HETATM 10 C C7 7R8 . . . B 2 -27.728 16.494 -10.865 1 22.39 ? C7 7R8 301 U 1 HETATM 11 C C5 7R8 . . . B 2 -28.786 17.389 -10.825 1 21.6 ? C5 7R8 301 U 1 HETATM 12 C C11 7R8 . . . B 2 -31.945 20.177 -10.87 1 20.76 ? C11 7R8 301 U 1 HETATM 13 N N2 7R8 . . . B 2 -32.391 20.631 -12.045 1 19.95 ? N2 7R8 301 U 1 HETATM 14 N N1 7R8 . . . B 2 -32.396 20.705 -9.73 1 19.95 ? N1 7R8 301 U 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #