data_7VMJ # _model_server_result.job_id v543PwL8UXQYpyW3FWboJQ _model_server_result.datetime_utc '2024-11-05 04:35:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vmj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":505}' # _entry.id 7VMJ # _exptl.entry_id 7VMJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 395.405 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[3-[[6-[[3-[bis(fluoranyl)methyl]phenyl]amino]pyrimidin-4-yl]amino]phenyl]cyclopropanecarboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VMJ _cell.length_a 104.976 _cell.length_b 157.934 _cell.length_c 182.334 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VMJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 11 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc6 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc7 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc8 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc9 B OE1 GLN 11 B GLN 11 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc10 K O1A GDP . B GDP 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc11 C OD1 ASP 39 C ASP 39 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc12 C OD2 ASP 39 C ASP 39 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc13 C O THR 41 C THR 41 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc14 C OG1 THR 41 C THR 41 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc15 C O GLY 44 C GLY 44 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc16 C OE1 GLU 55 C GLU 55 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc17 C OE2 GLU 55 C GLU 55 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc18 P O1G GTP . C GTP 501 1_555 Q MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc19 P O1B GTP . C GTP 501 1_555 Q MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? # _chem_comp.formula 'C21 H19 F2 N5 O' _chem_comp.formula_weight 395.405 _chem_comp.id 7PU _chem_comp.mon_nstd_flag . _chem_comp.name N-[3-[[6-[[3-[bis(fluoranyl)methyl]phenyl]amino]pyrimidin-4-yl]amino]phenyl]cyclopropanecarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 C28 7PU sing 1 n n C29 C27 7PU sing 2 n n C28 C27 7PU sing 3 n n C27 C25 7PU sing 4 n n C25 O26 7PU doub 5 n n C25 N24 7PU sing 6 n n N24 C01 7PU sing 7 n n C01 C06 7PU doub 8 n y C01 C02 7PU sing 9 n y C06 C05 7PU sing 10 n y C02 C03 7PU doub 11 n y C05 N07 7PU sing 12 n n C05 C04 7PU doub 13 n y C03 C04 7PU sing 14 n y N07 C08 7PU sing 15 n n C08 N09 7PU doub 16 n y C08 C13 7PU sing 17 n y N09 C10 7PU sing 18 n y F22 C21 7PU sing 19 n n C13 C12 7PU doub 20 n y C10 N11 7PU doub 21 n y C12 N11 7PU sing 22 n y C12 N14 7PU sing 23 n n C21 F23 7PU sing 24 n n C21 C19 7PU sing 25 n n C19 C20 7PU doub 26 n y C19 C18 7PU sing 27 n y C20 C15 7PU sing 28 n y C18 C17 7PU doub 29 n y C15 N14 7PU sing 30 n n C15 C16 7PU doub 31 n y C17 C16 7PU sing 32 n y C10 H1 7PU sing 33 n n C13 H2 7PU sing 34 n n C17 H3 7PU sing 35 n n C20 H4 7PU sing 36 n n C21 H5 7PU sing 37 n n C28 H6 7PU sing 38 n n C28 H7 7PU sing 39 n n C02 H8 7PU sing 40 n n C03 H9 7PU sing 41 n n C04 H10 7PU sing 42 n n C06 H11 7PU sing 43 n n C16 H12 7PU sing 44 n n C18 H13 7PU sing 45 n n C27 H14 7PU sing 46 n n C29 H15 7PU sing 47 n n C29 H16 7PU sing 48 n n N07 H17 7PU sing 49 n n N14 H18 7PU sing 50 n n N24 H19 7PU sing 51 n n # _atom_sites.entry_id 7VMJ _atom_sites.fract_transf_matrix[1][1] 0.009526 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 8 CL A 1 504 504 CL CL . K 9 GDP B 1 501 499 GDP GDP . L 6 MG B 1 502 500 MG MG . M 10 MES B 1 503 502 MES MES . N 10 MES B 1 504 503 MES MES . O 11 7PU B 1 505 504 7PU LIG . P 5 GTP C 1 501 501 GTP GTP . Q 6 MG C 1 502 502 MG MG . R 7 CA C 1 503 503 CA CA . S 9 GDP D 1 501 598 GDP GDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 7PU . . . O 11 20.042 71.017 41.128 1 50.61 ? C10 7PU 505 B 1 HETATM 2 C C13 7PU . . . O 11 18.497 68.79 40.904 1 42.91 ? C13 7PU 505 B 1 HETATM 3 C C15 7PU . . . O 11 17.433 67.568 43.338 1 47.89 ? C15 7PU 505 B 1 HETATM 4 C C17 7PU . . . O 11 16.941 65.264 43.824 1 45.46 ? C17 7PU 505 B 1 HETATM 5 C C20 7PU . . . O 11 16.157 67.76 42.82 1 44.85 ? C20 7PU 505 B 1 HETATM 6 C C21 7PU . . . O 11 13.861 66.874 42.241 1 52.65 ? C21 7PU 505 B 1 HETATM 7 C C28 7PU . . . O 11 18.506 64.023 32.799 1 38.6 ? C28 7PU 505 B 1 HETATM 8 C C01 7PU . . . O 11 16.361 67.018 36.419 1 48.22 ? C01 7PU 505 B 1 HETATM 9 C C02 7PU . . . O 11 15.167 67.139 37.132 1 49.35 ? C02 7PU 505 B 1 HETATM 10 C C03 7PU . . . O 11 15.114 67.897 38.293 1 49.89 ? C03 7PU 505 B 1 HETATM 11 C C04 7PU . . . O 11 16.267 68.53 38.745 1 52.65 ? C04 7PU 505 B 1 HETATM 12 C C05 7PU . . . O 11 17.458 68.389 38.041 1 41.91 ? C05 7PU 505 B 1 HETATM 13 C C06 7PU . . . O 11 17.501 67.643 36.884 1 44.46 ? C06 7PU 505 B 1 HETATM 14 C C08 7PU . . . O 11 18.982 69.479 39.79 1 53.05 ? C08 7PU 505 B 1 HETATM 15 C C12 7PU . . . O 11 18.845 69.303 42.145 1 49.72 ? C12 7PU 505 B 1 HETATM 16 C C16 7PU . . . O 11 17.829 66.326 43.84 1 44.08 ? C16 7PU 505 B 1 HETATM 17 C C18 7PU . . . O 11 15.664 65.459 43.296 1 41.8 ? C18 7PU 505 B 1 HETATM 18 C C19 7PU . . . O 11 15.274 66.693 42.801 1 51.18 ? C19 7PU 505 B 1 HETATM 19 C C25 7PU . . . O 11 17.572 65.88 34.384 1 42.66 ? C25 7PU 505 B 1 HETATM 20 C C27 7PU . . . O 11 17.332 64.934 33.172 1 49.5 ? C27 7PU 505 B 1 HETATM 21 C C29 7PU . . . O 11 18.068 65.137 31.847 1 38.95 ? C29 7PU 505 B 1 HETATM 22 F F22 7PU . . . O 11 13.863 66.693 40.882 1 61.65 ? F22 7PU 505 B 1 HETATM 23 F F23 7PU . . . O 11 13.419 68.137 42.528 1 61.36 ? F23 7PU 505 B 1 HETATM 24 N N07 7PU . . . O 11 18.7 69.033 38.438 1 46.24 ? N07 7PU 505 B 1 HETATM 25 N N09 7PU . . . O 11 19.742 70.552 39.929 1 53.88 ? N09 7PU 505 B 1 HETATM 26 N N11 7PU . . . O 11 19.603 70.39 42.213 1 57.02 ? N11 7PU 505 B 1 HETATM 27 N N14 7PU . . . O 11 18.384 68.675 43.375 1 49.96 ? N14 7PU 505 B 1 HETATM 28 N N24 7PU . . . O 11 16.395 66.194 35.205 1 43.38 ? N24 7PU 505 B 1 HETATM 29 O O26 7PU . . . O 11 18.647 66.299 34.662 1 41.21 ? O26 7PU 505 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 68 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #