data_7VNH # _model_server_result.job_id Fae8A57uINyavHArYzGuNA _model_server_result.datetime_utc '2024-10-17 04:19:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vnh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 7VNH # _exptl.entry_id 7VNH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 272.297 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 2-PHENYL-4H-BENZO[H]CHROMEN-4-ONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VNH _cell.length_a 60.235 _cell.length_b 60.235 _cell.length_c 121.046 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VNH _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C19 H12 O2' _chem_comp.formula_weight 272.297 _chem_comp.id BHF _chem_comp.mon_nstd_flag . _chem_comp.name 2-PHENYL-4H-BENZO[H]CHROMEN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7,8-BENZOFLAVONE;ALPHA-NAPHTHOFLAVONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C9 BHF sing 70 n y C8 C7 BHF doub 71 n y C8 H8 BHF sing 72 n n C9 O2 BHF doub 73 n n C9 C10 BHF sing 74 n y C10 C11 BHF sing 75 n y C10 C19 BHF doub 76 n y C11 C12 BHF doub 77 n y C11 H11 BHF sing 78 n n C12 C13 BHF sing 79 n y C12 H12 BHF sing 80 n n C13 C14 BHF doub 81 n y C13 C18 BHF sing 82 n y C14 C15 BHF sing 83 n y C14 H14 BHF sing 84 n n C15 C16 BHF doub 85 n y C15 H15 BHF sing 86 n n C16 C17 BHF sing 87 n y C16 H16 BHF sing 88 n n C17 C18 BHF doub 89 n y C17 H17 BHF sing 90 n n C18 C19 BHF sing 91 n y C19 O1 BHF sing 92 n y O1 C7 BHF sing 93 n y C7 C1 BHF sing 94 n y C1 C2 BHF doub 95 n y C1 C6 BHF sing 96 n y C2 C3 BHF sing 97 n y C2 H2 BHF sing 98 n n C3 C4 BHF doub 99 n y C3 H3 BHF sing 100 n n C4 C5 BHF sing 101 n y C4 H4 BHF sing 102 n n C5 C6 BHF doub 103 n y C5 H5 BHF sing 104 n n C6 H6 BHF sing 105 n n # _atom_sites.entry_id 7VNH _atom_sites.fract_transf_matrix[1][1] 0.016602 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008261 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BHF A 1 401 3 BHF LIG . D 2 BHF B 1 401 2 BHF LIG . E 3 HOH A 1 501 27 HOH HOH . E 3 HOH A 2 502 46 HOH HOH . E 3 HOH A 3 503 3 HOH HOH . E 3 HOH A 4 504 38 HOH HOH . E 3 HOH A 5 505 6 HOH HOH . E 3 HOH A 6 506 16 HOH HOH . E 3 HOH A 7 507 42 HOH HOH . E 3 HOH A 8 508 7 HOH HOH . E 3 HOH A 9 509 41 HOH HOH . E 3 HOH A 10 510 31 HOH HOH . E 3 HOH A 11 511 23 HOH HOH . E 3 HOH A 12 512 37 HOH HOH . E 3 HOH A 13 513 28 HOH HOH . E 3 HOH A 14 514 26 HOH HOH . E 3 HOH A 15 515 21 HOH HOH . E 3 HOH A 16 516 11 HOH HOH . E 3 HOH A 17 517 34 HOH HOH . E 3 HOH A 18 518 32 HOH HOH . E 3 HOH A 19 519 44 HOH HOH . E 3 HOH A 20 520 36 HOH HOH . E 3 HOH A 21 521 1 HOH HOH . E 3 HOH A 22 522 15 HOH HOH . E 3 HOH A 23 523 48 HOH HOH . E 3 HOH A 24 524 39 HOH HOH . F 3 HOH B 1 501 8 HOH HOH . F 3 HOH B 2 502 5 HOH HOH . F 3 HOH B 3 503 30 HOH HOH . F 3 HOH B 4 504 17 HOH HOH . F 3 HOH B 5 505 12 HOH HOH . F 3 HOH B 6 506 13 HOH HOH . F 3 HOH B 7 507 43 HOH HOH . F 3 HOH B 8 508 9 HOH HOH . F 3 HOH B 9 509 14 HOH HOH . F 3 HOH B 10 510 10 HOH HOH . F 3 HOH B 11 511 35 HOH HOH . F 3 HOH B 12 512 29 HOH HOH . F 3 HOH B 13 513 2 HOH HOH . F 3 HOH B 14 514 40 HOH HOH . F 3 HOH B 15 515 20 HOH HOH . F 3 HOH B 16 516 24 HOH HOH . F 3 HOH B 17 517 22 HOH HOH . F 3 HOH B 18 518 45 HOH HOH . F 3 HOH B 19 519 25 HOH HOH . F 3 HOH B 20 520 4 HOH HOH . F 3 HOH B 21 521 19 HOH HOH . F 3 HOH B 22 522 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 BHF . . . D 2 -22.452 16.849 -6.256 1 44.59 ? C8 BHF 401 B 1 HETATM 2 C C9 BHF . . . D 2 -22.447 15.893 -5.096 1 45.13 ? C9 BHF 401 B 1 HETATM 3 O O2 BHF . . . D 2 -22.569 16.63 -3.888 1 45.65 ? O2 BHF 401 B 1 HETATM 4 C C10 BHF . . . D 2 -23.604 14.882 -5.19 1 45.05 ? C10 BHF 401 B 1 HETATM 5 C C11 BHF . . . D 2 -23.999 14.196 -4.008 1 46.31 ? C11 BHF 401 B 1 HETATM 6 C C12 BHF . . . D 2 -25.041 13.26 -4.055 1 46.51 ? C12 BHF 401 B 1 HETATM 7 C C13 BHF . . . D 2 -25.729 13.003 -5.3 1 46.54 ? C13 BHF 401 B 1 HETATM 8 C C14 BHF . . . D 2 -26.796 12.06 -5.342 1 46.21 ? C14 BHF 401 B 1 HETATM 9 C C15 BHF . . . D 2 -27.456 11.809 -6.541 1 45.44 ? C15 BHF 401 B 1 HETATM 10 C C16 BHF . . . D 2 -27.074 12.485 -7.703 1 45.05 ? C16 BHF 401 B 1 HETATM 11 C C17 BHF . . . D 2 -26.032 13.409 -7.664 1 45.2 ? C17 BHF 401 B 1 HETATM 12 C C18 BHF . . . D 2 -25.355 13.668 -6.439 1 46.13 ? C18 BHF 401 B 1 HETATM 13 C C19 BHF . . . D 2 -24.263 14.636 -6.395 1 44.92 ? C19 BHF 401 B 1 HETATM 14 O O1 BHF . . . D 2 -23.925 15.296 -7.645 1 44.53 ? O1 BHF 401 B 1 HETATM 15 C C7 BHF . . . D 2 -22.994 16.366 -7.585 1 44.7 ? C7 BHF 401 B 1 HETATM 16 C C1 BHF . . . D 2 -22.312 16.843 -8.865 1 44.49 ? C1 BHF 401 B 1 HETATM 17 C C2 BHF . . . D 2 -20.941 17.036 -8.882 1 43.92 ? C2 BHF 401 B 1 HETATM 18 C C3 BHF . . . D 2 -20.315 17.47 -10.039 1 43.54 ? C3 BHF 401 B 1 HETATM 19 C C4 BHF . . . D 2 -21.063 17.716 -11.179 1 43.58 ? C4 BHF 401 B 1 HETATM 20 C C5 BHF . . . D 2 -22.436 17.528 -11.161 1 43.19 ? C5 BHF 401 B 1 HETATM 21 C C6 BHF . . . D 2 -23.061 17.092 -10.004 1 43.72 ? C6 BHF 401 B 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #