data_7VNL
#
_model_server_result.job_id            8Qyq11iSI3vucQQFB93V4Q 
_model_server_result.datetime_utc      '2024-11-24 11:38:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vnl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":302}' 
#
_entry.id    7VNL 
#
_exptl.entry_id    7VNL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              194.226 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'TETRAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7VNL 
_cell.length_a            158.388 
_cell.length_b            158.388 
_cell.length_c            81.073 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VNL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    'P 6c 2c' 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -158.388 0 40.5365 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 8 A CYS 27 1_555 A SG CYS 113 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 A SG CYS 41 A CYS 60 1_555 A SG CYS 165 A CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf3 B SG CYS 8 B CYS 27 1_555 B SG CYS 113 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf4 B SG CYS 41 B CYS 60 1_555 B SG CYS 165 B CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
#
_chem_comp.formula           'C8 H18 O5' 
_chem_comp.formula_weight    194.226 
_chem_comp.id                PG4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'TETRAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 PG4 sing 317 n n 
O1 HO1 PG4 sing 318 n n 
C1 C2 PG4 sing 319 n n 
C1 H11 PG4 sing 320 n n 
C1 H12 PG4 sing 321 n n 
C2 O2 PG4 sing 322 n n 
C2 H21 PG4 sing 323 n n 
C2 H22 PG4 sing 324 n n 
O2 C3 PG4 sing 325 n n 
C3 C4 PG4 sing 326 n n 
C3 H31 PG4 sing 327 n n 
C3 H32 PG4 sing 328 n n 
C4 O3 PG4 sing 329 n n 
C4 H41 PG4 sing 330 n n 
C4 H42 PG4 sing 331 n n 
O3 C5 PG4 sing 332 n n 
C5 C6 PG4 sing 333 n n 
C5 H51 PG4 sing 334 n n 
C5 H52 PG4 sing 335 n n 
C6 O4 PG4 sing 336 n n 
C6 H61 PG4 sing 337 n n 
C6 H62 PG4 sing 338 n n 
O4 C7 PG4 sing 339 n n 
C7 C8 PG4 sing 340 n n 
C7 H71 PG4 sing 341 n n 
C7 H72 PG4 sing 342 n n 
C8 O5 PG4 sing 343 n n 
C8 H81 PG4 sing 344 n n 
C8 H82 PG4 sing 345 n n 
O5 HO5 PG4 sing 346 n n 
#
_atom_sites.entry_id                     7VNL 
_atom_sites.fract_transf_matrix[1][1]    0.006314 
_atom_sites.fract_transf_matrix[1][2]    0.003645 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00729 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012335 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BLA A 1 301 201 BLA BLA . 
D 3 PG4 A 1 302 202 PG4 PG4 . 
E 2 BLA B 1 301 201 BLA BLA . 
F 3 PG4 B 1 302 202 PG4 PG4 . 
G 4 HOH A 1 401 141 HOH HOH . 
G 4 HOH A 2 402 64 HOH HOH . 
G 4 HOH A 3 403 146 HOH HOH . 
G 4 HOH A 4 404 132 HOH HOH . 
G 4 HOH A 5 405 11 HOH HOH . 
G 4 HOH A 6 406 66 HOH HOH . 
G 4 HOH A 7 407 158 HOH HOH . 
G 4 HOH A 8 408 149 HOH HOH . 
G 4 HOH A 9 409 175 HOH HOH . 
G 4 HOH A 10 410 193 HOH HOH . 
G 4 HOH A 11 411 163 HOH HOH . 
G 4 HOH A 12 412 116 HOH HOH . 
G 4 HOH A 13 413 174 HOH HOH . 
G 4 HOH A 14 414 10 HOH HOH . 
G 4 HOH A 15 415 72 HOH HOH . 
G 4 HOH A 16 416 68 HOH HOH . 
G 4 HOH A 17 417 32 HOH HOH . 
G 4 HOH A 18 418 201 HOH HOH . 
G 4 HOH A 19 419 183 HOH HOH . 
G 4 HOH A 20 420 182 HOH HOH . 
G 4 HOH A 21 421 195 HOH HOH . 
G 4 HOH A 22 422 159 HOH HOH . 
G 4 HOH A 23 423 95 HOH HOH . 
G 4 HOH A 24 424 180 HOH HOH . 
G 4 HOH A 25 425 4 HOH HOH . 
G 4 HOH A 26 426 3 HOH HOH . 
G 4 HOH A 27 427 25 HOH HOH . 
G 4 HOH A 28 428 42 HOH HOH . 
G 4 HOH A 29 429 125 HOH HOH . 
G 4 HOH A 30 430 136 HOH HOH . 
G 4 HOH A 31 431 47 HOH HOH . 
G 4 HOH A 32 432 171 HOH HOH . 
G 4 HOH A 33 433 45 HOH HOH . 
G 4 HOH A 34 434 172 HOH HOH . 
G 4 HOH A 35 435 82 HOH HOH . 
G 4 HOH A 36 436 162 HOH HOH . 
G 4 HOH A 37 437 48 HOH HOH . 
G 4 HOH A 38 438 88 HOH HOH . 
G 4 HOH A 39 439 118 HOH HOH . 
G 4 HOH A 40 440 58 HOH HOH . 
G 4 HOH A 41 441 157 HOH HOH . 
G 4 HOH A 42 442 121 HOH HOH . 
G 4 HOH A 43 443 44 HOH HOH . 
G 4 HOH A 44 444 181 HOH HOH . 
G 4 HOH A 45 445 53 HOH HOH . 
G 4 HOH A 46 446 83 HOH HOH . 
G 4 HOH A 47 447 107 HOH HOH . 
G 4 HOH A 48 448 55 HOH HOH . 
G 4 HOH A 49 449 22 HOH HOH . 
G 4 HOH A 50 450 1 HOH HOH . 
G 4 HOH A 51 451 56 HOH HOH . 
G 4 HOH A 52 452 151 HOH HOH . 
G 4 HOH A 53 453 154 HOH HOH . 
G 4 HOH A 54 454 73 HOH HOH . 
G 4 HOH A 55 455 24 HOH HOH . 
G 4 HOH A 56 456 102 HOH HOH . 
G 4 HOH A 57 457 165 HOH HOH . 
G 4 HOH A 58 458 51 HOH HOH . 
G 4 HOH A 59 459 211 HOH HOH . 
G 4 HOH A 60 460 143 HOH HOH . 
G 4 HOH A 61 461 46 HOH HOH . 
G 4 HOH A 62 462 57 HOH HOH . 
G 4 HOH A 63 463 179 HOH HOH . 
G 4 HOH A 64 464 84 HOH HOH . 
G 4 HOH A 65 465 109 HOH HOH . 
G 4 HOH A 66 466 77 HOH HOH . 
G 4 HOH A 67 467 148 HOH HOH . 
G 4 HOH A 68 468 31 HOH HOH . 
G 4 HOH A 69 469 34 HOH HOH . 
G 4 HOH A 70 470 2 HOH HOH . 
G 4 HOH A 71 471 204 HOH HOH . 
G 4 HOH A 72 472 52 HOH HOH . 
G 4 HOH A 73 473 113 HOH HOH . 
G 4 HOH A 74 474 203 HOH HOH . 
G 4 HOH A 75 475 208 HOH HOH . 
G 4 HOH A 76 476 92 HOH HOH . 
G 4 HOH A 77 477 178 HOH HOH . 
G 4 HOH A 78 478 5 HOH HOH . 
G 4 HOH A 79 479 189 HOH HOH . 
G 4 HOH A 80 480 200 HOH HOH . 
G 4 HOH A 81 481 138 HOH HOH . 
G 4 HOH A 82 482 127 HOH HOH . 
G 4 HOH A 83 483 23 HOH HOH . 
G 4 HOH A 84 484 137 HOH HOH . 
G 4 HOH A 85 485 54 HOH HOH . 
G 4 HOH A 86 486 93 HOH HOH . 
G 4 HOH A 87 487 140 HOH HOH . 
G 4 HOH A 88 488 33 HOH HOH . 
G 4 HOH A 89 489 192 HOH HOH . 
G 4 HOH A 90 490 176 HOH HOH . 
G 4 HOH A 91 491 194 HOH HOH . 
G 4 HOH A 92 492 100 HOH HOH . 
G 4 HOH A 93 493 205 HOH HOH . 
G 4 HOH A 94 494 96 HOH HOH . 
G 4 HOH A 95 495 12 HOH HOH . 
G 4 HOH A 96 496 191 HOH HOH . 
G 4 HOH A 97 497 87 HOH HOH . 
G 4 HOH A 98 498 147 HOH HOH . 
G 4 HOH A 99 499 124 HOH HOH . 
G 4 HOH A 100 500 63 HOH HOH . 
G 4 HOH A 101 501 43 HOH HOH . 
G 4 HOH A 102 502 155 HOH HOH . 
G 4 HOH A 103 503 130 HOH HOH . 
G 4 HOH A 104 504 65 HOH HOH . 
G 4 HOH A 105 505 69 HOH HOH . 
G 4 HOH A 106 506 99 HOH HOH . 
G 4 HOH A 107 507 197 HOH HOH . 
G 4 HOH A 108 508 60 HOH HOH . 
G 4 HOH A 109 509 129 HOH HOH . 
G 4 HOH A 110 510 50 HOH HOH . 
G 4 HOH A 111 511 49 HOH HOH . 
G 4 HOH A 112 512 190 HOH HOH . 
G 4 HOH A 113 513 198 HOH HOH . 
G 4 HOH A 114 514 74 HOH HOH . 
H 4 HOH B 1 401 167 HOH HOH . 
H 4 HOH B 2 402 168 HOH HOH . 
H 4 HOH B 3 403 19 HOH HOH . 
H 4 HOH B 4 404 202 HOH HOH . 
H 4 HOH B 5 405 21 HOH HOH . 
H 4 HOH B 6 406 40 HOH HOH . 
H 4 HOH B 7 407 114 HOH HOH . 
H 4 HOH B 8 408 112 HOH HOH . 
H 4 HOH B 9 409 144 HOH HOH . 
H 4 HOH B 10 410 98 HOH HOH . 
H 4 HOH B 11 411 164 HOH HOH . 
H 4 HOH B 12 412 38 HOH HOH . 
H 4 HOH B 13 413 185 HOH HOH . 
H 4 HOH B 14 414 15 HOH HOH . 
H 4 HOH B 15 415 160 HOH HOH . 
H 4 HOH B 16 416 101 HOH HOH . 
H 4 HOH B 17 417 133 HOH HOH . 
H 4 HOH B 18 418 62 HOH HOH . 
H 4 HOH B 19 419 115 HOH HOH . 
H 4 HOH B 20 420 61 HOH HOH . 
H 4 HOH B 21 421 78 HOH HOH . 
H 4 HOH B 22 422 71 HOH HOH . 
H 4 HOH B 23 423 135 HOH HOH . 
H 4 HOH B 24 424 89 HOH HOH . 
H 4 HOH B 25 425 210 HOH HOH . 
H 4 HOH B 26 426 16 HOH HOH . 
H 4 HOH B 27 427 150 HOH HOH . 
H 4 HOH B 28 428 8 HOH HOH . 
H 4 HOH B 29 429 59 HOH HOH . 
H 4 HOH B 30 430 206 HOH HOH . 
H 4 HOH B 31 431 106 HOH HOH . 
H 4 HOH B 32 432 122 HOH HOH . 
H 4 HOH B 33 433 79 HOH HOH . 
H 4 HOH B 34 434 27 HOH HOH . 
H 4 HOH B 35 435 28 HOH HOH . 
H 4 HOH B 36 436 18 HOH HOH . 
H 4 HOH B 37 437 173 HOH HOH . 
H 4 HOH B 38 438 41 HOH HOH . 
H 4 HOH B 39 439 184 HOH HOH . 
H 4 HOH B 40 440 35 HOH HOH . 
H 4 HOH B 41 441 126 HOH HOH . 
H 4 HOH B 42 442 13 HOH HOH . 
H 4 HOH B 43 443 97 HOH HOH . 
H 4 HOH B 44 444 9 HOH HOH . 
H 4 HOH B 45 445 120 HOH HOH . 
H 4 HOH B 46 446 90 HOH HOH . 
H 4 HOH B 47 447 153 HOH HOH . 
H 4 HOH B 48 448 196 HOH HOH . 
H 4 HOH B 49 449 169 HOH HOH . 
H 4 HOH B 50 450 186 HOH HOH . 
H 4 HOH B 51 451 161 HOH HOH . 
H 4 HOH B 52 452 30 HOH HOH . 
H 4 HOH B 53 453 123 HOH HOH . 
H 4 HOH B 54 454 94 HOH HOH . 
H 4 HOH B 55 455 6 HOH HOH . 
H 4 HOH B 56 456 170 HOH HOH . 
H 4 HOH B 57 457 14 HOH HOH . 
H 4 HOH B 58 458 67 HOH HOH . 
H 4 HOH B 59 459 199 HOH HOH . 
H 4 HOH B 60 460 207 HOH HOH . 
H 4 HOH B 61 461 108 HOH HOH . 
H 4 HOH B 62 462 76 HOH HOH . 
H 4 HOH B 63 463 70 HOH HOH . 
H 4 HOH B 64 464 17 HOH HOH . 
H 4 HOH B 65 465 7 HOH HOH . 
H 4 HOH B 66 466 131 HOH HOH . 
H 4 HOH B 67 467 37 HOH HOH . 
H 4 HOH B 68 468 20 HOH HOH . 
H 4 HOH B 69 469 142 HOH HOH . 
H 4 HOH B 70 470 139 HOH HOH . 
H 4 HOH B 71 471 119 HOH HOH . 
H 4 HOH B 72 472 36 HOH HOH . 
H 4 HOH B 73 473 104 HOH HOH . 
H 4 HOH B 74 474 117 HOH HOH . 
H 4 HOH B 75 475 81 HOH HOH . 
H 4 HOH B 76 476 145 HOH HOH . 
H 4 HOH B 77 477 177 HOH HOH . 
H 4 HOH B 78 478 39 HOH HOH . 
H 4 HOH B 79 479 29 HOH HOH . 
H 4 HOH B 80 480 103 HOH HOH . 
H 4 HOH B 81 481 110 HOH HOH . 
H 4 HOH B 82 482 156 HOH HOH . 
H 4 HOH B 83 483 86 HOH HOH . 
H 4 HOH B 84 484 85 HOH HOH . 
H 4 HOH B 85 485 209 HOH HOH . 
H 4 HOH B 86 486 80 HOH HOH . 
H 4 HOH B 87 487 75 HOH HOH . 
H 4 HOH B 88 488 26 HOH HOH . 
H 4 HOH B 89 489 91 HOH HOH . 
H 4 HOH B 90 490 111 HOH HOH . 
H 4 HOH B 91 491 188 HOH HOH . 
H 4 HOH B 92 492 187 HOH HOH . 
H 4 HOH B 93 493 166 HOH HOH . 
H 4 HOH B 94 494 128 HOH HOH . 
H 4 HOH B 95 495 134 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PG4 . . . F 3 -73.07 5.553 25.617 1 54 ? O1 PG4 302 B 1 
HETATM 2 C C1 PG4 . . . F 3 -74.134 5.52 26.572 1 60.63 ? C1 PG4 302 B 1 
HETATM 3 C C2 PG4 . . . F 3 -74.188 4.213 27.312 1 52.47 ? C2 PG4 302 B 1 
HETATM 4 O O2 PG4 . . . F 3 -74.675 4.415 28.636 1 57 ? O2 PG4 302 B 1 
HETATM 5 C C3 PG4 . . . F 3 -76.077 4.627 28.672 1 52.5 ? C3 PG4 302 B 1 
HETATM 6 C C4 PG4 . . . F 3 -76.622 4.402 30.039 1 45.5 ? C4 PG4 302 B 1 
HETATM 7 O O3 PG4 . . . F 3 -78.002 4.13 29.881 1 52.2 ? O3 PG4 302 B 1 
HETATM 8 C C5 PG4 . . . F 3 -78.648 3.907 31.125 1 51.02 ? C5 PG4 302 B 1 
HETATM 9 C C6 PG4 . . . F 3 -80.078 4.249 30.847 1 50.06 ? C6 PG4 302 B 1 
HETATM 10 O O4 PG4 . . . F 3 -80.03 5.148 29.746 1 49.17 ? O4 PG4 302 B 1 
HETATM 11 C C7 PG4 . . . F 3 -81.353 5.432 29.297 1 41.96 ? C7 PG4 302 B 1 
HETATM 12 C C8 PG4 . . . F 3 -81.26 6.29 28.074 1 42.75 ? C8 PG4 302 B 1 
HETATM 13 O O5 PG4 . . . F 3 -81.1 7.644 28.466 1 55.77 ? O5 PG4 302 B 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           13 
#