data_7VNP # _model_server_result.job_id u2IzGTD2bhAh5fuw66LoGw _model_server_result.datetime_utc '2024-10-18 04:21:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vnp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":1103}' # _entry.id 7VNP # _exptl.entry_id 7VNP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 257.371 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S,2S,4R)-N-(2,4,6-trimethylphenyl)bicyclo[2.2.1]heptane-2-carboxamid _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VNP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VNP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 O N N ? 5 P N N ? 5 S N N ? 5 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 291 A THR 283 1_555 L K K . A K 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc2 A O THR 291 A THR 283 1_555 N K K . A K 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc3 A OG1 THR 291 A THR 283 1_555 N K K . A K 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.016 ? metalc ? metalc4 A O ILE 292 A ILE 284 1_555 L K K . A K 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc5 A O ILE 292 A ILE 284 1_555 M K K . A K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc6 A O GLY 293 A GLY 285 1_555 K K K . A K 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc7 A O GLY 293 A GLY 285 1_555 M K K . A K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc8 A O TYR 294 A TYR 286 1_555 K K K . A K 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.141 ? metalc ? metalc9 K K K . A K 1103 1_555 C O GLY 293 C GLY 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc10 K K K . A K 1103 1_555 C O TYR 294 C TYR 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.156 ? metalc ? metalc11 K K K . A K 1103 1_555 E O GLY 293 E GLY 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc12 K K K . A K 1103 1_555 E O TYR 294 E TYR 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.109 ? metalc ? metalc13 K K K . A K 1103 1_555 G O GLY 293 G GLY 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? metalc ? metalc14 K K K . A K 1103 1_555 G O TYR 294 G TYR 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.071 ? metalc ? metalc15 L K K . A K 1104 1_555 C O THR 291 C THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? metalc ? metalc16 L K K . A K 1104 1_555 C O ILE 292 C ILE 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? metalc ? metalc17 L K K . A K 1104 1_555 E O THR 291 E THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc18 L K K . A K 1104 1_555 E O ILE 292 E ILE 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? metalc ? metalc19 L K K . A K 1104 1_555 G O THR 291 G THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? metalc ? metalc20 L K K . A K 1104 1_555 G O ILE 292 G ILE 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc21 M K K . A K 1105 1_555 C O ILE 292 C ILE 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc22 M K K . A K 1105 1_555 C O GLY 293 C GLY 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc23 M K K . A K 1105 1_555 E O ILE 292 E ILE 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc24 M K K . A K 1105 1_555 E O GLY 293 E GLY 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc25 M K K . A K 1105 1_555 G O ILE 292 G ILE 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc26 M K K . A K 1105 1_555 G O GLY 293 G GLY 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc27 N K K . A K 1106 1_555 C O THR 291 C THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc28 N K K . A K 1106 1_555 C OG1 THR 291 C THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc29 N K K . A K 1106 1_555 E O THR 291 E THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc30 N K K . A K 1106 1_555 E OG1 THR 291 E THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? metalc ? metalc31 N K K . A K 1106 1_555 G O THR 291 G THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc32 N K K . A K 1106 1_555 G OG1 THR 291 G THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.04 ? # _chem_comp.formula 'C17 H23 N O' _chem_comp.formula_weight 257.371 _chem_comp.id 7YV _chem_comp.mon_nstd_flag . _chem_comp.name (1S,2S,4R)-N-(2,4,6-trimethylphenyl)bicyclo[2.2.1]heptane-2-carboxamid _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C16 7YV sing 1 n n C16 C14 7YV doub 2 n y C16 C15 7YV sing 3 n y C14 C12 7YV sing 4 n y C15 C13 7YV doub 5 n y C12 C17 7YV sing 6 n n C12 C11 7YV doub 7 n y C13 C11 7YV sing 8 n y C13 C18 7YV sing 9 n n C11 N02 7YV sing 10 n n N02 C10 7YV sing 11 n n C08 C03 7YV sing 12 n n C08 C09 7YV sing 13 n n C10 C06 7YV sing 14 n n C10 O01 7YV doub 15 n n C06 C03 7YV sing 16 n n C06 C07 7YV sing 17 n n C03 C05 7YV sing 18 n n C09 C04 7YV sing 19 n n C05 C04 7YV sing 20 n n C07 C04 7YV sing 21 n n C15 H151 7YV sing 22 n n C17 H172 7YV sing 23 n n C17 H173 7YV sing 24 n n C17 H171 7YV sing 25 n n N02 H021 7YV sing 26 n n C03 H031 7YV sing 27 n n C04 H041 7YV sing 28 n n C05 H051 7YV sing 29 n n C05 H052 7YV sing 30 n n C06 H061 7YV sing 31 n n C07 H071 7YV sing 32 n n C07 H072 7YV sing 33 n n C08 H082 7YV sing 34 n n C08 H081 7YV sing 35 n n C09 H091 7YV sing 36 n n C09 H092 7YV sing 37 n n C14 H141 7YV sing 38 n n C18 H181 7YV sing 39 n n C18 H182 7YV sing 40 n n C18 H183 7YV sing 41 n n C19 H191 7YV sing 42 n n C19 H192 7YV sing 43 n n C19 H193 7YV sing 44 n n # _atom_sites.entry_id 7VNP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 PT5 A 1 1101 801 PT5 PT5 . J 3 PT5 A 1 1102 802 PT5 PT5 . K 4 K A 1 1103 1 K K . L 4 K A 1 1104 2 K K . M 4 K A 1 1105 3 K K . N 4 K A 1 1106 4 K K . O 5 7YV A 1 1107 803 7YV LIG . P 5 7YV A 1 1108 803 7YV LIG . Q 3 PT5 C 1 1101 801 PT5 PT5 . R 3 PT5 C 1 1102 802 PT5 PT5 . S 5 7YV C 1 1103 803 7YV LIG . T 3 PT5 E 1 1101 801 PT5 PT5 . U 3 PT5 E 1 1102 802 PT5 PT5 . V 5 7YV E 1 1103 803 7YV LIG . W 3 PT5 G 1 1101 801 PT5 PT5 . X 3 PT5 G 1 1102 802 PT5 PT5 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 7YV . . . V 5 117.903 135.169 110.222 1 77.43 ? C10 7YV 1103 E 1 HETATM 2 C C13 7YV . . . V 5 119.498 137.542 108.471 1 77.43 ? C13 7YV 1103 E 1 HETATM 3 C C15 7YV . . . V 5 120.692 138.054 108.108 1 77.43 ? C15 7YV 1103 E 1 HETATM 4 C C17 7YV . . . V 5 120.054 133.907 108.541 1 77.43 ? C17 7YV 1103 E 1 HETATM 5 O O01 7YV . . . V 5 118.764 135.022 111.002 1 77.43 ? O01 7YV 1103 E 1 HETATM 6 N N02 7YV . . . V 5 118.102 135.771 108.967 1 77.43 ? N02 7YV 1103 E 1 HETATM 7 C C03 7YV . . . V 5 115.822 136.061 110.434 1 77.43 ? C03 7YV 1103 E 1 HETATM 8 C C04 7YV . . . V 5 115.378 135.323 112.269 1 77.43 ? C04 7YV 1103 E 1 HETATM 9 C C05 7YV . . . V 5 115.79 136.408 111.691 1 77.43 ? C05 7YV 1103 E 1 HETATM 10 C C06 7YV . . . V 5 116.516 134.797 110.382 1 77.43 ? C06 7YV 1103 E 1 HETATM 11 C C07 7YV . . . V 5 116.229 134.148 111.753 1 77.43 ? C07 7YV 1103 E 1 HETATM 12 C C08 7YV . . . V 5 114.326 135.808 110.133 1 77.43 ? C08 7YV 1103 E 1 HETATM 13 C C09 7YV . . . V 5 114.051 135.17 111.644 1 77.43 ? C09 7YV 1103 E 1 HETATM 14 C C11 7YV . . . V 5 119.36 136.231 108.597 1 77.43 ? C11 7YV 1103 E 1 HETATM 15 C C12 7YV . . . V 5 120.337 135.364 108.368 1 77.43 ? C12 7YV 1103 E 1 HETATM 16 C C14 7YV . . . V 5 121.542 135.849 108.002 1 77.43 ? C14 7YV 1103 E 1 HETATM 17 C C16 7YV . . . V 5 121.698 137.17 107.882 1 77.43 ? C16 7YV 1103 E 1 HETATM 18 C C18 7YV . . . V 5 118.29 138.354 108.776 1 77.43 ? C18 7YV 1103 E 1 HETATM 19 C C19 7YV . . . V 5 123.033 137.652 107.473 1 77.43 ? C19 7YV 1103 E 1 HETATM 20 H H151 7YV . . . V 5 120.839 139.106 108.001 1 77.43 ? H151 7YV 1103 E 1 HETATM 21 H H172 7YV . . . V 5 120.663 133.334 107.865 1 77.43 ? H172 7YV 1103 E 1 HETATM 22 H H173 7YV . . . V 5 119.009 133.731 108.334 1 77.43 ? H173 7YV 1103 E 1 HETATM 23 H H171 7YV . . . V 5 120.263 133.652 109.567 1 77.43 ? H171 7YV 1103 E 1 HETATM 24 H H021 7YV . . . V 5 117.335 135.873 108.358 1 77.43 ? H021 7YV 1103 E 1 HETATM 25 H H031 7YV . . . V 5 116.246 136.819 109.82 1 77.43 ? H031 7YV 1103 E 1 HETATM 26 H H041 7YV . . . V 5 115.332 135.395 113.325 1 77.43 ? H041 7YV 1103 E 1 HETATM 27 H H051 7YV . . . V 5 115.04 137.159 111.827 1 77.43 ? H051 7YV 1103 E 1 HETATM 28 H H052 7YV . . . V 5 116.765 136.702 112.026 1 77.43 ? H052 7YV 1103 E 1 HETATM 29 H H061 7YV . . . V 5 116.186 134.209 109.552 1 77.43 ? H061 7YV 1103 E 1 HETATM 30 H H071 7YV . . . V 5 117.126 134.013 112.322 1 77.43 ? H071 7YV 1103 E 1 HETATM 31 H H072 7YV . . . V 5 115.627 133.274 111.634 1 77.43 ? H072 7YV 1103 E 1 HETATM 32 H H082 7YV . . . V 5 114.21 135.1 109.329 1 77.43 ? H082 7YV 1103 E 1 HETATM 33 H H081 7YV . . . V 5 113.823 136.75 110.001 1 77.43 ? H081 7YV 1103 E 1 HETATM 34 H H091 7YV . . . V 5 113.8 134.131 111.595 1 77.43 ? H091 7YV 1103 E 1 HETATM 35 H H092 7YV . . . V 5 113.358 135.774 112.187 1 77.43 ? H092 7YV 1103 E 1 HETATM 36 H H141 7YV . . . V 5 122.362 135.206 107.815 1 77.43 ? H141 7YV 1103 E 1 HETATM 37 H H181 7YV . . . V 5 118.553 139.389 108.88 1 77.43 ? H181 7YV 1103 E 1 HETATM 38 H H182 7YV . . . V 5 117.92 137.976 109.712 1 77.43 ? H182 7YV 1103 E 1 HETATM 39 H H183 7YV . . . V 5 117.543 138.214 108.012 1 77.43 ? H183 7YV 1103 E 1 HETATM 40 H H191 7YV . . . V 5 123.411 136.966 106.738 1 77.43 ? H191 7YV 1103 E 1 HETATM 41 H H192 7YV . . . V 5 123.66 137.635 108.349 1 77.43 ? H192 7YV 1103 E 1 HETATM 42 H H193 7YV . . . V 5 122.922 138.648 107.068 1 77.43 ? H193 7YV 1103 E 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 42 #