data_7VNP # _model_server_result.job_id XiOOBKdrIsvfadz3Pii2Zw _model_server_result.datetime_utc '2024-10-18 04:24:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vnp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1107}' # _entry.id 7VNP # _exptl.entry_id 7VNP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 257.371 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S,2S,4R)-N-(2,4,6-trimethylphenyl)bicyclo[2.2.1]heptane-2-carboxamid _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VNP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VNP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 O N N ? 5 P N N ? 5 S N N ? 5 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 291 A THR 283 1_555 L K K . A K 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc2 A O THR 291 A THR 283 1_555 N K K . A K 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc3 A OG1 THR 291 A THR 283 1_555 N K K . A K 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.016 ? metalc ? metalc4 A O ILE 292 A ILE 284 1_555 L K K . A K 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc5 A O ILE 292 A ILE 284 1_555 M K K . A K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc6 A O GLY 293 A GLY 285 1_555 K K K . A K 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc7 A O GLY 293 A GLY 285 1_555 M K K . A K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc8 A O TYR 294 A TYR 286 1_555 K K K . A K 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.141 ? metalc ? metalc9 K K K . A K 1103 1_555 C O GLY 293 C GLY 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc10 K K K . A K 1103 1_555 C O TYR 294 C TYR 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.156 ? metalc ? metalc11 K K K . A K 1103 1_555 E O GLY 293 E GLY 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc12 K K K . A K 1103 1_555 E O TYR 294 E TYR 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.109 ? metalc ? metalc13 K K K . A K 1103 1_555 G O GLY 293 G GLY 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? metalc ? metalc14 K K K . A K 1103 1_555 G O TYR 294 G TYR 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.071 ? metalc ? metalc15 L K K . A K 1104 1_555 C O THR 291 C THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? metalc ? metalc16 L K K . A K 1104 1_555 C O ILE 292 C ILE 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? metalc ? metalc17 L K K . A K 1104 1_555 E O THR 291 E THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc18 L K K . A K 1104 1_555 E O ILE 292 E ILE 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? metalc ? metalc19 L K K . A K 1104 1_555 G O THR 291 G THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? metalc ? metalc20 L K K . A K 1104 1_555 G O ILE 292 G ILE 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc21 M K K . A K 1105 1_555 C O ILE 292 C ILE 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc22 M K K . A K 1105 1_555 C O GLY 293 C GLY 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc23 M K K . A K 1105 1_555 E O ILE 292 E ILE 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc24 M K K . A K 1105 1_555 E O GLY 293 E GLY 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc25 M K K . A K 1105 1_555 G O ILE 292 G ILE 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc26 M K K . A K 1105 1_555 G O GLY 293 G GLY 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc27 N K K . A K 1106 1_555 C O THR 291 C THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc28 N K K . A K 1106 1_555 C OG1 THR 291 C THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc29 N K K . A K 1106 1_555 E O THR 291 E THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc30 N K K . A K 1106 1_555 E OG1 THR 291 E THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? metalc ? metalc31 N K K . A K 1106 1_555 G O THR 291 G THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc32 N K K . A K 1106 1_555 G OG1 THR 291 G THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.04 ? # _chem_comp.formula 'C17 H23 N O' _chem_comp.formula_weight 257.371 _chem_comp.id 7YV _chem_comp.mon_nstd_flag . _chem_comp.name (1S,2S,4R)-N-(2,4,6-trimethylphenyl)bicyclo[2.2.1]heptane-2-carboxamid _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C16 7YV sing 1 n n C16 C14 7YV doub 2 n y C16 C15 7YV sing 3 n y C14 C12 7YV sing 4 n y C15 C13 7YV doub 5 n y C12 C17 7YV sing 6 n n C12 C11 7YV doub 7 n y C13 C11 7YV sing 8 n y C13 C18 7YV sing 9 n n C11 N02 7YV sing 10 n n N02 C10 7YV sing 11 n n C08 C03 7YV sing 12 n n C08 C09 7YV sing 13 n n C10 C06 7YV sing 14 n n C10 O01 7YV doub 15 n n C06 C03 7YV sing 16 n n C06 C07 7YV sing 17 n n C03 C05 7YV sing 18 n n C09 C04 7YV sing 19 n n C05 C04 7YV sing 20 n n C07 C04 7YV sing 21 n n C15 H151 7YV sing 22 n n C17 H172 7YV sing 23 n n C17 H173 7YV sing 24 n n C17 H171 7YV sing 25 n n N02 H021 7YV sing 26 n n C03 H031 7YV sing 27 n n C04 H041 7YV sing 28 n n C05 H051 7YV sing 29 n n C05 H052 7YV sing 30 n n C06 H061 7YV sing 31 n n C07 H071 7YV sing 32 n n C07 H072 7YV sing 33 n n C08 H082 7YV sing 34 n n C08 H081 7YV sing 35 n n C09 H091 7YV sing 36 n n C09 H092 7YV sing 37 n n C14 H141 7YV sing 38 n n C18 H181 7YV sing 39 n n C18 H182 7YV sing 40 n n C18 H183 7YV sing 41 n n C19 H191 7YV sing 42 n n C19 H192 7YV sing 43 n n C19 H193 7YV sing 44 n n # _atom_sites.entry_id 7VNP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 PT5 A 1 1101 801 PT5 PT5 . J 3 PT5 A 1 1102 802 PT5 PT5 . K 4 K A 1 1103 1 K K . L 4 K A 1 1104 2 K K . M 4 K A 1 1105 3 K K . N 4 K A 1 1106 4 K K . O 5 7YV A 1 1107 803 7YV LIG . P 5 7YV A 1 1108 803 7YV LIG . Q 3 PT5 C 1 1101 801 PT5 PT5 . R 3 PT5 C 1 1102 802 PT5 PT5 . S 5 7YV C 1 1103 803 7YV LIG . T 3 PT5 E 1 1101 801 PT5 PT5 . U 3 PT5 E 1 1102 802 PT5 PT5 . V 5 7YV E 1 1103 803 7YV LIG . W 3 PT5 G 1 1101 801 PT5 PT5 . X 3 PT5 G 1 1102 802 PT5 PT5 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 7YV . . . O 5 128.116 110.83 110.266 1 76.88 ? C10 7YV 1107 A 1 HETATM 2 C C13 7YV . . . O 5 126.523 108.451 108.52 1 76.88 ? C13 7YV 1107 A 1 HETATM 3 C C15 7YV . . . O 5 125.329 107.937 108.158 1 76.88 ? C15 7YV 1107 A 1 HETATM 4 C C17 7YV . . . O 5 125.963 112.086 108.58 1 76.88 ? C17 7YV 1107 A 1 HETATM 5 O O01 7YV . . . O 5 127.254 110.979 111.045 1 76.88 ? O01 7YV 1107 A 1 HETATM 6 N N02 7YV . . . O 5 127.917 110.224 109.012 1 76.88 ? N02 7YV 1107 A 1 HETATM 7 C C03 7YV . . . O 5 130.197 109.94 110.481 1 76.88 ? C03 7YV 1107 A 1 HETATM 8 C C04 7YV . . . O 5 130.639 110.684 112.314 1 76.88 ? C04 7YV 1107 A 1 HETATM 9 C C05 7YV . . . O 5 130.228 109.597 111.739 1 76.88 ? C05 7YV 1107 A 1 HETATM 10 C C06 7YV . . . O 5 129.502 111.204 110.425 1 76.88 ? C06 7YV 1107 A 1 HETATM 11 C C07 7YV . . . O 5 129.787 111.857 111.794 1 76.88 ? C07 7YV 1107 A 1 HETATM 12 C C08 7YV . . . O 5 131.692 110.194 110.18 1 76.88 ? C08 7YV 1107 A 1 HETATM 13 C C09 7YV . . . O 5 131.967 110.836 111.689 1 76.88 ? C09 7YV 1107 A 1 HETATM 14 C C11 7YV . . . O 5 126.66 109.762 108.642 1 76.88 ? C11 7YV 1107 A 1 HETATM 15 C C12 7YV . . . O 5 125.682 110.627 108.411 1 76.88 ? C12 7YV 1107 A 1 HETATM 16 C C14 7YV . . . O 5 124.477 110.141 108.046 1 76.88 ? C14 7YV 1107 A 1 HETATM 17 C C16 7YV . . . O 5 124.323 108.82 107.929 1 76.88 ? C16 7YV 1107 A 1 HETATM 18 C C18 7YV . . . O 5 127.731 107.641 108.828 1 76.88 ? C18 7YV 1107 A 1 HETATM 19 C C19 7YV . . . O 5 122.989 108.335 107.521 1 76.88 ? C19 7YV 1107 A 1 HETATM 20 H H151 7YV . . . O 5 125.185 106.888 108.053 1 76.88 ? H151 7YV 1107 A 1 HETATM 21 H H172 7YV . . . O 5 125.365 112.651 107.888 1 76.88 ? H172 7YV 1107 A 1 HETATM 22 H H173 7YV . . . O 5 127.011 112.26 108.383 1 76.88 ? H173 7YV 1107 A 1 HETATM 23 H H171 7YV . . . O 5 125.739 112.349 109.602 1 76.88 ? H171 7YV 1107 A 1 HETATM 24 H H021 7YV . . . O 5 128.683 110.121 108.404 1 76.88 ? H021 7YV 1107 A 1 HETATM 25 H H031 7YV . . . O 5 129.776 109.182 109.868 1 76.88 ? H031 7YV 1107 A 1 HETATM 26 H H041 7YV . . . O 5 130.681 110.616 113.372 1 76.88 ? H041 7YV 1107 A 1 HETATM 27 H H051 7YV . . . O 5 130.981 108.849 111.873 1 76.88 ? H051 7YV 1107 A 1 HETATM 28 H H052 7YV . . . O 5 129.253 109.299 112.075 1 76.88 ? H052 7YV 1107 A 1 HETATM 29 H H061 7YV . . . O 5 129.831 111.79 109.594 1 76.88 ? H061 7YV 1107 A 1 HETATM 30 H H071 7YV . . . O 5 128.89 111.992 112.362 1 76.88 ? H071 7YV 1107 A 1 HETATM 31 H H072 7YV . . . O 5 130.39 112.731 111.672 1 76.88 ? H072 7YV 1107 A 1 HETATM 32 H H082 7YV . . . O 5 131.805 110.9 109.374 1 76.88 ? H082 7YV 1107 A 1 HETATM 33 H H081 7YV . . . O 5 132.198 109.253 110.045 1 76.88 ? H081 7YV 1107 A 1 HETATM 34 H H091 7YV . . . O 5 132.217 111.875 111.635 1 76.88 ? H091 7YV 1107 A 1 HETATM 35 H H092 7YV . . . O 5 132.661 110.235 112.234 1 76.88 ? H092 7YV 1107 A 1 HETATM 36 H H141 7YV . . . O 5 123.657 110.783 107.853 1 76.88 ? H141 7YV 1107 A 1 HETATM 37 H H181 7YV . . . O 5 127.465 106.609 108.949 1 76.88 ? H181 7YV 1107 A 1 HETATM 38 H H182 7YV . . . O 5 128.113 108.03 109.754 1 76.88 ? H182 7YV 1107 A 1 HETATM 39 H H183 7YV . . . O 5 128.469 107.765 108.055 1 76.88 ? H183 7YV 1107 A 1 HETATM 40 H H191 7YV . . . O 5 122.506 109.141 106.995 1 76.88 ? H191 7YV 1107 A 1 HETATM 41 H H192 7YV . . . O 5 122.438 108.086 108.417 1 76.88 ? H192 7YV 1107 A 1 HETATM 42 H H193 7YV . . . O 5 123.128 107.476 106.886 1 76.88 ? H193 7YV 1107 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 42 #