data_7VNY # _model_server_result.job_id iBJIclHpT4T-pH0Hsl40qA _model_server_result.datetime_utc '2024-10-15 11:23:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vny # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LB","auth_seq_id":102}' # _entry.id 7VNY # _exptl.entry_id 7VNY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 568.914 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPHEROIDENE _entity.pdbx_number_of_molecules 26 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VNY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VNY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 33-meric _pdbx_struct_assembly.oligomeric_count 33 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 TA N N ? 13 DB N N ? 13 FB N N ? 13 GB N N ? 13 JB N N ? 13 LB N N ? 13 NB N N ? 13 PB N N ? 13 QB N N ? 13 SB N N ? 13 VB N N ? 13 XB N N ? 13 ZB N N ? 13 AC N N ? 13 FC N N ? 13 GC N N ? 13 IC N N ? 13 KC N N ? 13 LC N N ? 13 OC N N ? 13 RC N N ? 13 TC N N ? 13 YC N N ? 13 AD N N ? 13 BD N N ? 13 DD N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 191 L HIS 190 1_555 PA FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc2 A NE2 HIS 231 L HIS 230 1_555 PA FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc3 B NE2 HIS 220 M HIS 219 1_555 PA FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc4 B OE1 GLU 235 M GLU 234 1_555 PA FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc5 B OE2 GLU 235 M GLU 234 1_555 PA FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc6 B NE2 HIS 267 M HIS 266 1_555 PA FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? # _chem_comp.formula 'C41 H60 O' _chem_comp.formula_weight 568.914 _chem_comp.id SPO _chem_comp.mon_nstd_flag . _chem_comp.name SPHEROIDENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CM1 O1 SPO sing 976 n n CM1 HM11 SPO sing 977 n n CM1 HM12 SPO sing 978 n n CM1 HM13 SPO sing 979 n n O1 C1 SPO sing 980 n n C1 C2 SPO sing 981 n n C1 C3 SPO sing 982 n n C1 C4 SPO sing 983 n n C2 H21A SPO sing 984 n n C2 H22A SPO sing 985 n n C2 H23 SPO sing 986 n n C3 H31 SPO sing 987 n n C3 H32A SPO sing 988 n n C3 H33 SPO sing 989 n n C4 C5 SPO sing 990 n n C4 H41 SPO sing 991 n n C4 H42 SPO sing 992 n n C5 C6 SPO doub 993 e n C5 H5 SPO sing 994 n n C6 C7 SPO sing 995 n n C6 H6 SPO sing 996 n n C7 C8 SPO sing 997 n n C7 C9 SPO doub 998 e n C8 H81 SPO sing 999 n n C8 H82 SPO sing 1000 n n C8 H83 SPO sing 1001 n n C9 C10 SPO sing 1002 n n C9 H9 SPO sing 1003 n n C10 C11 SPO doub 1004 e n C10 H10 SPO sing 1005 n n C11 C12 SPO sing 1006 n n C11 H11 SPO sing 1007 n n C12 C13 SPO sing 1008 n n C12 C14 SPO doub 1009 e n C13 H131 SPO sing 1010 n n C13 H132 SPO sing 1011 n n C13 H133 SPO sing 1012 n n C14 C15 SPO sing 1013 n n C14 H14 SPO sing 1014 n n C15 C16 SPO doub 1015 e n C15 H15 SPO sing 1016 n n C16 C17 SPO sing 1017 n n C16 H16 SPO sing 1018 n n C17 C18 SPO sing 1019 n n C17 C19 SPO doub 1020 z n C18 H181 SPO sing 1021 n n C18 H182 SPO sing 1022 n n C18 H183 SPO sing 1023 n n C19 C20 SPO sing 1024 n n C19 H19 SPO sing 1025 n n C20 C21 SPO doub 1026 e n C20 H20 SPO sing 1027 n n C21 C22 SPO sing 1028 n n C21 H21 SPO sing 1029 n n C22 C23 SPO doub 1030 e n C22 H22 SPO sing 1031 n n C23 C24 SPO sing 1032 n n C23 C25 SPO sing 1033 n n C24 H241 SPO sing 1034 n n C24 H242 SPO sing 1035 n n C24 H243 SPO sing 1036 n n C25 C26 SPO doub 1037 e n C25 H25 SPO sing 1038 n n C26 C27 SPO sing 1039 n n C26 H26 SPO sing 1040 n n C27 C28 SPO doub 1041 e n C27 H27 SPO sing 1042 n n C28 C29 SPO sing 1043 n n C28 C30 SPO sing 1044 n n C29 H291 SPO sing 1045 n n C29 H292 SPO sing 1046 n n C29 H293 SPO sing 1047 n n C30 C31 SPO sing 1048 n n C30 H301 SPO sing 1049 n n C30 H302 SPO sing 1050 n n C31 C32 SPO sing 1051 n n C31 H311 SPO sing 1052 n n C31 H312 SPO sing 1053 n n C32 C33 SPO doub 1054 e n C32 H32 SPO sing 1055 n n C33 C34 SPO sing 1056 n n C33 C35 SPO sing 1057 n n C34 H341 SPO sing 1058 n n C34 H342 SPO sing 1059 n n C34 H343 SPO sing 1060 n n C35 C36 SPO sing 1061 n n C35 H351 SPO sing 1062 n n C35 H352 SPO sing 1063 n n C36 C37 SPO sing 1064 n n C36 H361 SPO sing 1065 n n C36 H362 SPO sing 1066 n n C37 C38 SPO doub 1067 n n C37 H37 SPO sing 1068 n n C38 C39 SPO sing 1069 n n C38 C40 SPO sing 1070 n n C39 H391 SPO sing 1071 n n C39 H392 SPO sing 1072 n n C39 H393 SPO sing 1073 n n C40 H401 SPO sing 1074 n n C40 H402 SPO sing 1075 n n C40 H403 SPO sing 1076 n n # _atom_sites.entry_id 7VNY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code HA 8 BCL L 1 301 852 BCL BCL . IA 8 BCL L 1 302 854 BCL BCL . JA 9 BPB L 1 303 856 BPB BPH . KA 10 PC1 L 1 304 1201 PC1 PC1 . LA 11 U10 L 1 305 1401 U10 U10 . MA 10 PC1 L 1 306 1402 PC1 PC1 . NA 8 BCL L 1 307 402 BCL BCL . OA 11 U10 L 1 308 601 U10 U10 . PA 12 FE2 M 1 401 857 FE2 FE2 . QA 8 BCL M 1 402 853 BCL BCL . RA 9 BPB M 1 403 855 BPB BPH . SA 11 U10 M 1 404 858 U10 U10 . TA 13 SPO M 1 405 1310 SPO SPO . UA 14 CDL M 1 406 1401 CDL CDL . VA 10 PC1 H 1 301 1403 PC1 PC1 . WA 10 PC1 H 1 302 1402 PC1 PC1 . XA 10 PC1 H 1 303 301 PC1 PC1 . YA 14 CDL H 1 304 301 CDL CDL . ZA 8 BCL A 1 101 101 BCL BCL . AB 10 PC1 A 1 102 201 PC1 PC1 . BB 8 BCL A 1 103 101 BCL BCL . CB 10 PC1 A 1 104 201 PC1 PC1 . DB 13 SPO B 1 101 104 SPO SPO . EB 8 BCL D 1 101 101 BCL BCL . FB 13 SPO D 1 102 104 SPO SPO . GB 13 SPO D 1 103 105 SPO SPO . HB 10 PC1 D 1 104 201 PC1 PC1 . IB 8 BCL E 1 101 101 BCL BCL . JB 13 SPO E 1 102 105 SPO SPO . KB 8 BCL F 1 101 101 BCL BCL . LB 13 SPO F 1 102 104 SPO SPO . MB 8 BCL F 1 103 101 BCL BCL . NB 13 SPO G 1 101 105 SPO SPO . OB 8 BCL I 1 101 101 BCL BCL . PB 13 SPO I 1 102 104 SPO SPO . QB 13 SPO J 1 101 104 SPO SPO . RB 8 BCL J 1 102 101 BCL BCL . SB 13 SPO J 1 103 105 SPO SPO . TB 8 BCL K 1 101 101 BCL BCL . UB 8 BCL N 1 101 101 BCL BCL . VB 13 SPO N 1 102 105 SPO SPO . WB 8 BCL O 1 101 101 BCL BCL . XB 13 SPO O 1 102 104 SPO SPO . YB 8 BCL O 1 103 101 BCL BCL . ZB 13 SPO O 1 104 104 SPO SPO . AC 13 SPO P 1 101 105 SPO SPO . BC 8 BCL Q 1 101 101 BCL BCL . CC 8 BCL R 1 101 101 BCL BCL . DC 8 BCL S 1 101 101 BCL BCL . EC 8 BCL S 1 102 101 BCL BCL . FC 13 SPO T 1 101 104 SPO SPO . GC 13 SPO T 1 102 105 SPO SPO . HC 8 BCL U 1 101 101 BCL BCL . IC 13 SPO U 1 102 104 SPO SPO . JC 8 BCL U 1 103 101 BCL BCL . KC 13 SPO U 1 104 105 SPO SPO . LC 13 SPO V 1 101 105 SPO SPO . MC 10 PC1 W 1 101 105 PC1 PC1 . NC 8 BCL W 1 102 101 BCL BCL . OC 13 SPO W 1 103 104 SPO SPO . PC 8 BCL C 1 101 101 BCL BCL . QC 8 BCL 3 1 101 101 BCL BCL . RC 13 SPO 3 1 102 104 SPO SPO . SC 8 BCL 3 1 103 101 BCL BCL . TC 13 SPO 3 1 104 105 SPO SPO . UC 8 BCL 1 1 101 101 BCL BCL . VC 8 BCL 1 1 102 101 BCL BCL . WC 8 BCL 7 1 101 101 BCL BCL . XC 8 BCL 8 1 101 101 BCL BCL . YC 13 SPO 8 1 102 105 SPO SPO . ZC 8 BCL 9 1 101 101 BCL BCL . AD 13 SPO 9 1 102 104 SPO SPO . BD 13 SPO 0 1 101 105 SPO SPO . CD 8 BCL 0 1 102 101 BCL BCL . DD 13 SPO X 1 101 104 SPO SPO . ED 11 U10 Y 1 501 501 U10 U10 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CM1 SPO . . . LB 13 115.873 101.189 128.929 1 62.6 ? CM1 SPO 102 F 1 HETATM 2 O O1 SPO . . . LB 13 115.163 100.415 129.888 1 62.6 ? O1 SPO 102 F 1 HETATM 3 C C1 SPO . . . LB 13 113.805 100.145 129.582 1 62.6 ? C1 SPO 102 F 1 HETATM 4 C C2 SPO . . . LB 13 113.684 99.577 128.149 1 62.6 ? C2 SPO 102 F 1 HETATM 5 C C3 SPO . . . LB 13 112.998 101.457 129.687 1 62.6 ? C3 SPO 102 F 1 HETATM 6 C C4 SPO . . . LB 13 113.277 99.088 130.621 1 62.6 ? C4 SPO 102 F 1 HETATM 7 C C5 SPO . . . LB 13 113.933 99.325 132.018 1 62.6 ? C5 SPO 102 F 1 HETATM 8 C C6 SPO . . . LB 13 113.002 99.693 132.925 1 62.6 ? C6 SPO 102 F 1 HETATM 9 C C7 SPO . . . LB 13 112.456 100.153 134.326 1 62.6 ? C7 SPO 102 F 1 HETATM 10 C C8 SPO . . . LB 13 113.836 100.447 134.978 1 62.6 ? C8 SPO 102 F 1 HETATM 11 C C9 SPO . . . LB 13 111.163 100.25 134.72 1 62.6 ? C9 SPO 102 F 1 HETATM 12 C C10 SPO . . . LB 13 110.682 100.763 136.129 1 62.6 ? C10 SPO 102 F 1 HETATM 13 C C11 SPO . . . LB 13 109.607 99.978 136.447 1 62.6 ? C11 SPO 102 F 1 HETATM 14 C C12 SPO . . . LB 13 109.132 100.613 137.819 1 62.6 ? C12 SPO 102 F 1 HETATM 15 C C13 SPO . . . LB 13 110.429 100.542 138.686 1 62.6 ? C13 SPO 102 F 1 HETATM 16 C C14 SPO . . . LB 13 107.824 101.008 138.041 1 62.6 ? C14 SPO 102 F 1 HETATM 17 C C15 SPO . . . LB 13 107.226 101.646 139.359 1 62.6 ? C15 SPO 102 F 1 HETATM 18 C C16 SPO . . . LB 13 105.928 101.314 139.234 1 62.6 ? C16 SPO 102 F 1 HETATM 19 C C17 SPO . . . LB 13 105.168 101.974 140.511 1 62.6 ? C17 SPO 102 F 1 HETATM 20 C C18 SPO . . . LB 13 106.283 102.018 141.608 1 62.6 ? C18 SPO 102 F 1 HETATM 21 C C19 SPO . . . LB 13 103.865 102.322 140.451 1 62.6 ? C19 SPO 102 F 1 HETATM 22 C C20 SPO . . . LB 13 103.024 103.006 141.625 1 62.6 ? C20 SPO 102 F 1 HETATM 23 C C21 SPO . . . LB 13 101.779 103.13 141.076 1 62.6 ? C21 SPO 102 F 1 HETATM 24 C C22 SPO . . . LB 13 101.138 103.83 142.323 1 62.6 ? C22 SPO 102 F 1 HETATM 25 C C23 SPO . . . LB 13 100.06 104.486 141.844 1 62.6 ? C23 SPO 102 F 1 HETATM 26 C C24 SPO . . . LB 13 98.948 105.13 140.975 1 62.6 ? C24 SPO 102 F 1 HETATM 27 C C25 SPO . . . LB 13 99.372 105.244 143.105 1 62.6 ? C25 SPO 102 F 1 HETATM 28 C C26 SPO . . . LB 13 98.056 104.965 143.318 1 62.6 ? C26 SPO 102 F 1 HETATM 29 C C27 SPO . . . LB 13 98.072 105.957 144.553 1 62.6 ? C27 SPO 102 F 1 HETATM 30 C C28 SPO . . . LB 13 96.876 106.624 144.71 1 62.6 ? C28 SPO 102 F 1 HETATM 31 C C29 SPO . . . LB 13 95.441 107.189 144.621 1 62.6 ? C29 SPO 102 F 1 HETATM 32 C C30 SPO . . . LB 13 97.144 107.564 146.008 1 62.6 ? C30 SPO 102 F 1 HETATM 33 C C31 SPO . . . LB 13 95.99 107.61 147.136 1 62.6 ? C31 SPO 102 F 1 HETATM 34 C C32 SPO . . . LB 13 96.65 107.704 148.589 1 62.6 ? C32 SPO 102 F 1 HETATM 35 C C33 SPO . . . LB 13 96.084 108.556 149.526 1 62.6 ? C33 SPO 102 F 1 HETATM 36 C C34 SPO . . . LB 13 94.96 109.282 148.795 1 62.6 ? C34 SPO 102 F 1 HETATM 37 C C35 SPO . . . LB 13 95.676 109.541 150.751 1 62.6 ? C35 SPO 102 F 1 HETATM 38 C C36 SPO . . . LB 13 94.407 109.01 151.547 1 62.6 ? C36 SPO 102 F 1 HETATM 39 C C37 SPO . . . LB 13 94.694 108.875 153.079 1 62.6 ? C37 SPO 102 F 1 HETATM 40 C C38 SPO . . . LB 13 94.474 109.877 153.964 1 62.6 ? C38 SPO 102 F 1 HETATM 41 C C39 SPO . . . LB 13 94.771 109.667 155.462 1 62.6 ? C39 SPO 102 F 1 HETATM 42 C C40 SPO . . . LB 13 93.945 111.257 153.532 1 62.6 ? C40 SPO 102 F 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 42 #