data_7VNY # _model_server_result.job_id LOUtEU48v0gCEAr-GzleAQ _model_server_result.datetime_utc '2024-10-15 11:19:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vny # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":304}' # _entry.id 7VNY # _exptl.entry_id 7VNY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VNY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VNY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 33-meric _pdbx_struct_assembly.oligomeric_count 33 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 KA N N ? 10 MA N N ? 10 VA N N ? 10 WA N N ? 10 XA N N ? 10 AB N N ? 10 CB N N ? 10 HB N N ? 10 MC N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 191 L HIS 190 1_555 PA FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc2 A NE2 HIS 231 L HIS 230 1_555 PA FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc3 B NE2 HIS 220 M HIS 219 1_555 PA FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc4 B OE1 GLU 235 M GLU 234 1_555 PA FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc5 B OE2 GLU 235 M GLU 234 1_555 PA FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc6 B NE2 HIS 267 M HIS 266 1_555 PA FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 782 n n P O14 PC1 doub 783 n n P O13 PC1 sing 784 n n P O11 PC1 sing 785 n n O13 C11 PC1 sing 786 n n C11 C12 PC1 sing 787 n n C11 H111 PC1 sing 788 n n C11 H112 PC1 sing 789 n n C12 N PC1 sing 790 n n C12 H121 PC1 sing 791 n n C12 H122 PC1 sing 792 n n N C13 PC1 sing 793 n n N C14 PC1 sing 794 n n N C15 PC1 sing 795 n n C13 H131 PC1 sing 796 n n C13 H132 PC1 sing 797 n n C13 H133 PC1 sing 798 n n C14 H141 PC1 sing 799 n n C14 H142 PC1 sing 800 n n C14 H143 PC1 sing 801 n n C15 H151 PC1 sing 802 n n C15 H152 PC1 sing 803 n n C15 H153 PC1 sing 804 n n O11 C1 PC1 sing 805 n n C1 C2 PC1 sing 806 n n C1 H11 PC1 sing 807 n n C1 H12 PC1 sing 808 n n C2 O21 PC1 sing 809 n n C2 C3 PC1 sing 810 n n C2 H2 PC1 sing 811 n n O21 C21 PC1 sing 812 n n C21 O22 PC1 doub 813 n n C21 C22 PC1 sing 814 n n C22 C23 PC1 sing 815 n n C22 H221 PC1 sing 816 n n C22 H222 PC1 sing 817 n n C23 C24 PC1 sing 818 n n C23 H231 PC1 sing 819 n n C23 H232 PC1 sing 820 n n C24 C25 PC1 sing 821 n n C24 H241 PC1 sing 822 n n C24 H242 PC1 sing 823 n n C25 C26 PC1 sing 824 n n C25 H251 PC1 sing 825 n n C25 H252 PC1 sing 826 n n C26 C27 PC1 sing 827 n n C26 H261 PC1 sing 828 n n C26 H262 PC1 sing 829 n n C27 C28 PC1 sing 830 n n C27 H271 PC1 sing 831 n n C27 H272 PC1 sing 832 n n C28 C29 PC1 sing 833 n n C28 H281 PC1 sing 834 n n C28 H282 PC1 sing 835 n n C29 C2A PC1 sing 836 n n C29 H291 PC1 sing 837 n n C29 H292 PC1 sing 838 n n C2A C2B PC1 sing 839 n n C2A H2A1 PC1 sing 840 n n C2A H2A2 PC1 sing 841 n n C2B C2C PC1 sing 842 n n C2B H2B1 PC1 sing 843 n n C2B H2B2 PC1 sing 844 n n C2C C2D PC1 sing 845 n n C2C H2C1 PC1 sing 846 n n C2C H2C2 PC1 sing 847 n n C2D C2E PC1 sing 848 n n C2D H2D1 PC1 sing 849 n n C2D H2D2 PC1 sing 850 n n C2E C2F PC1 sing 851 n n C2E H2E1 PC1 sing 852 n n C2E H2E2 PC1 sing 853 n n C2F C2G PC1 sing 854 n n C2F H2F1 PC1 sing 855 n n C2F H2F2 PC1 sing 856 n n C2G C2H PC1 sing 857 n n C2G H2G1 PC1 sing 858 n n C2G H2G2 PC1 sing 859 n n C2H C2I PC1 sing 860 n n C2H H2H1 PC1 sing 861 n n C2H H2H2 PC1 sing 862 n n C2I H2I1 PC1 sing 863 n n C2I H2I2 PC1 sing 864 n n C2I H2I3 PC1 sing 865 n n C3 O31 PC1 sing 866 n n C3 H31 PC1 sing 867 n n C3 H32 PC1 sing 868 n n O31 C31 PC1 sing 869 n n C31 O32 PC1 doub 870 n n C31 C32 PC1 sing 871 n n C32 C33 PC1 sing 872 n n C32 H321 PC1 sing 873 n n C32 H322 PC1 sing 874 n n C33 C34 PC1 sing 875 n n C33 H331 PC1 sing 876 n n C33 H332 PC1 sing 877 n n C34 C35 PC1 sing 878 n n C34 H341 PC1 sing 879 n n C34 H342 PC1 sing 880 n n C35 C36 PC1 sing 881 n n C35 H351 PC1 sing 882 n n C35 H352 PC1 sing 883 n n C36 C37 PC1 sing 884 n n C36 H361 PC1 sing 885 n n C36 H362 PC1 sing 886 n n C37 C38 PC1 sing 887 n n C37 H371 PC1 sing 888 n n C37 H372 PC1 sing 889 n n C38 C39 PC1 sing 890 n n C38 H381 PC1 sing 891 n n C38 H382 PC1 sing 892 n n C39 C3A PC1 sing 893 n n C39 H391 PC1 sing 894 n n C39 H392 PC1 sing 895 n n C3A C3B PC1 sing 896 n n C3A H3A1 PC1 sing 897 n n C3A H3A2 PC1 sing 898 n n C3B C3C PC1 sing 899 n n C3B H3B1 PC1 sing 900 n n C3B H3B2 PC1 sing 901 n n C3C C3D PC1 sing 902 n n C3C H3C1 PC1 sing 903 n n C3C H3C2 PC1 sing 904 n n C3D C3E PC1 sing 905 n n C3D H3D1 PC1 sing 906 n n C3D H3D2 PC1 sing 907 n n C3E C3F PC1 sing 908 n n C3E H3E1 PC1 sing 909 n n C3E H3E2 PC1 sing 910 n n C3F C3G PC1 sing 911 n n C3F H3F1 PC1 sing 912 n n C3F H3F2 PC1 sing 913 n n C3G C3H PC1 sing 914 n n C3G H3G1 PC1 sing 915 n n C3G H3G2 PC1 sing 916 n n C3H C3I PC1 sing 917 n n C3H H3H1 PC1 sing 918 n n C3H H3H2 PC1 sing 919 n n C3I H3I1 PC1 sing 920 n n C3I H3I2 PC1 sing 921 n n C3I H3I3 PC1 sing 922 n n # _atom_sites.entry_id 7VNY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code HA 8 BCL L 1 301 852 BCL BCL . IA 8 BCL L 1 302 854 BCL BCL . JA 9 BPB L 1 303 856 BPB BPH . KA 10 PC1 L 1 304 1201 PC1 PC1 . LA 11 U10 L 1 305 1401 U10 U10 . MA 10 PC1 L 1 306 1402 PC1 PC1 . NA 8 BCL L 1 307 402 BCL BCL . OA 11 U10 L 1 308 601 U10 U10 . PA 12 FE2 M 1 401 857 FE2 FE2 . QA 8 BCL M 1 402 853 BCL BCL . RA 9 BPB M 1 403 855 BPB BPH . SA 11 U10 M 1 404 858 U10 U10 . TA 13 SPO M 1 405 1310 SPO SPO . UA 14 CDL M 1 406 1401 CDL CDL . VA 10 PC1 H 1 301 1403 PC1 PC1 . WA 10 PC1 H 1 302 1402 PC1 PC1 . XA 10 PC1 H 1 303 301 PC1 PC1 . YA 14 CDL H 1 304 301 CDL CDL . ZA 8 BCL A 1 101 101 BCL BCL . AB 10 PC1 A 1 102 201 PC1 PC1 . BB 8 BCL A 1 103 101 BCL BCL . CB 10 PC1 A 1 104 201 PC1 PC1 . DB 13 SPO B 1 101 104 SPO SPO . EB 8 BCL D 1 101 101 BCL BCL . FB 13 SPO D 1 102 104 SPO SPO . GB 13 SPO D 1 103 105 SPO SPO . HB 10 PC1 D 1 104 201 PC1 PC1 . IB 8 BCL E 1 101 101 BCL BCL . JB 13 SPO E 1 102 105 SPO SPO . KB 8 BCL F 1 101 101 BCL BCL . LB 13 SPO F 1 102 104 SPO SPO . MB 8 BCL F 1 103 101 BCL BCL . NB 13 SPO G 1 101 105 SPO SPO . OB 8 BCL I 1 101 101 BCL BCL . PB 13 SPO I 1 102 104 SPO SPO . QB 13 SPO J 1 101 104 SPO SPO . RB 8 BCL J 1 102 101 BCL BCL . SB 13 SPO J 1 103 105 SPO SPO . TB 8 BCL K 1 101 101 BCL BCL . UB 8 BCL N 1 101 101 BCL BCL . VB 13 SPO N 1 102 105 SPO SPO . WB 8 BCL O 1 101 101 BCL BCL . XB 13 SPO O 1 102 104 SPO SPO . YB 8 BCL O 1 103 101 BCL BCL . ZB 13 SPO O 1 104 104 SPO SPO . AC 13 SPO P 1 101 105 SPO SPO . BC 8 BCL Q 1 101 101 BCL BCL . CC 8 BCL R 1 101 101 BCL BCL . DC 8 BCL S 1 101 101 BCL BCL . EC 8 BCL S 1 102 101 BCL BCL . FC 13 SPO T 1 101 104 SPO SPO . GC 13 SPO T 1 102 105 SPO SPO . HC 8 BCL U 1 101 101 BCL BCL . IC 13 SPO U 1 102 104 SPO SPO . JC 8 BCL U 1 103 101 BCL BCL . KC 13 SPO U 1 104 105 SPO SPO . LC 13 SPO V 1 101 105 SPO SPO . MC 10 PC1 W 1 101 105 PC1 PC1 . NC 8 BCL W 1 102 101 BCL BCL . OC 13 SPO W 1 103 104 SPO SPO . PC 8 BCL C 1 101 101 BCL BCL . QC 8 BCL 3 1 101 101 BCL BCL . RC 13 SPO 3 1 102 104 SPO SPO . SC 8 BCL 3 1 103 101 BCL BCL . TC 13 SPO 3 1 104 105 SPO SPO . UC 8 BCL 1 1 101 101 BCL BCL . VC 8 BCL 1 1 102 101 BCL BCL . WC 8 BCL 7 1 101 101 BCL BCL . XC 8 BCL 8 1 101 101 BCL BCL . YC 13 SPO 8 1 102 105 SPO SPO . ZC 8 BCL 9 1 101 101 BCL BCL . AD 13 SPO 9 1 102 104 SPO SPO . BD 13 SPO 0 1 101 105 SPO SPO . CD 8 BCL 0 1 102 101 BCL BCL . DD 13 SPO X 1 101 104 SPO SPO . ED 11 U10 Y 1 501 501 U10 U10 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . KA 10 111.241 119.405 109.567 1 78.54 ? O12 PC1 304 L 1 HETATM 2 P P PC1 . . . KA 10 109.771 119.139 109.789 1 78.54 ? P PC1 304 L 1 HETATM 3 O O14 PC1 . . . KA 10 109.402 117.796 109.197 1 78.54 ? O14 PC1 304 L 1 HETATM 4 O O13 PC1 . . . KA 10 108.854 120.336 109.05 1 78.54 ? O13 PC1 304 L 1 HETATM 5 C C11 PC1 . . . KA 10 108.184 120.009 107.831 1 78.54 ? C11 PC1 304 L 1 HETATM 6 C C12 PC1 . . . KA 10 106.799 120.681 107.812 1 78.54 ? C12 PC1 304 L 1 HETATM 7 N N PC1 . . . KA 10 105.718 119.703 108.054 1 78.54 ? N PC1 304 L 1 HETATM 8 C C13 PC1 . . . KA 10 105.613 119.425 109.482 1 78.54 ? C13 PC1 304 L 1 HETATM 9 C C14 PC1 . . . KA 10 104.485 120.266 107.59 1 78.54 ? C14 PC1 304 L 1 HETATM 10 C C15 PC1 . . . KA 10 105.97 118.473 107.336 1 78.54 ? C15 PC1 304 L 1 HETATM 11 O O11 PC1 . . . KA 10 109.464 119.141 111.436 1 78.54 ? O11 PC1 304 L 1 HETATM 12 C C1 PC1 . . . KA 10 108.645 118.113 112 1 78.54 ? C1 PC1 304 L 1 HETATM 13 C C2 PC1 . . . KA 10 108.638 118.286 113.517 1 78.54 ? C2 PC1 304 L 1 HETATM 14 O O21 PC1 . . . KA 10 108 119.486 113.856 1 78.54 ? O21 PC1 304 L 1 HETATM 15 C C21 PC1 . . . KA 10 106.949 119.299 114.796 1 78.54 ? C21 PC1 304 L 1 HETATM 16 O O22 PC1 . . . KA 10 106.368 118.265 114.818 1 78.54 ? O22 PC1 304 L 1 HETATM 17 C C22 PC1 . . . KA 10 106.552 120.438 115.786 1 78.54 ? C22 PC1 304 L 1 HETATM 18 C C23 PC1 . . . KA 10 107.784 120.891 116.626 1 78.54 ? C23 PC1 304 L 1 HETATM 19 C C24 PC1 . . . KA 10 107.34 122.075 117.554 1 78.54 ? C24 PC1 304 L 1 HETATM 20 C C25 PC1 . . . KA 10 106.848 123.277 116.681 1 78.54 ? C25 PC1 304 L 1 HETATM 21 C C26 PC1 . . . KA 10 107.79 124.515 116.894 1 78.54 ? C26 PC1 304 L 1 HETATM 22 C C27 PC1 . . . KA 10 107.579 125.541 115.751 1 78.54 ? C27 PC1 304 L 1 HETATM 23 C C28 PC1 . . . KA 10 107.505 126.975 116.358 1 78.54 ? C28 PC1 304 L 1 HETATM 24 C C29 PC1 . . . KA 10 107.102 127.988 115.26 1 78.54 ? C29 PC1 304 L 1 HETATM 25 C C2A PC1 . . . KA 10 107.518 129.403 115.71 1 78.54 ? C2A PC1 304 L 1 HETATM 26 C C2B PC1 . . . KA 10 109.015 129.413 116.099 1 78.54 ? C2B PC1 304 L 1 HETATM 27 C C3 PC1 . . . KA 10 110.101 118.319 114.015 1 78.54 ? C3 PC1 304 L 1 HETATM 28 O O31 PC1 . . . KA 10 110.118 118.735 115.375 1 78.54 ? O31 PC1 304 L 1 HETATM 29 C C31 PC1 . . . KA 10 110.478 117.678 116.274 1 78.54 ? C31 PC1 304 L 1 HETATM 30 O O32 PC1 . . . KA 10 110.869 116.648 115.838 1 78.54 ? O32 PC1 304 L 1 HETATM 31 C C32 PC1 . . . KA 10 110.365 117.893 117.805 1 78.54 ? C32 PC1 304 L 1 HETATM 32 C C33 PC1 . . . KA 10 111.443 118.903 118.246 1 78.54 ? C33 PC1 304 L 1 HETATM 33 C C34 PC1 . . . KA 10 111.197 119.393 119.693 1 78.54 ? C34 PC1 304 L 1 HETATM 34 C C35 PC1 . . . KA 10 109.681 119.583 119.968 1 78.54 ? C35 PC1 304 L 1 HETATM 35 C C36 PC1 . . . KA 10 109.513 120.399 121.292 1 78.54 ? C36 PC1 304 L 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #