data_7VOD # _model_server_result.job_id oKkWakT25aG8uSC1ciGAxA _model_server_result.datetime_utc '2024-11-28 05:20:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vod # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1208}' # _entry.id 7VOD # _exptl.entry_id 7VOD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.411 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[4-[2-[4-[2,3-bis(chloranyl)phenyl]piperazin-1-yl]ethyl]cyclohexyl]-1,1-dimethyl-urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VOD _cell.length_a 50.27 _cell.length_b 55.04 _cell.length_c 180.29 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VOD _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 82 A CYS 148 1_555 A SG CYS 161 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? disulf ? disulf2 A SG CYS 322 A CYS 349 1_555 A SG CYS 326 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc1 A OE2 GLU 207 A GLU 1008 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc2 A OE2 GLU 207 A GLU 1008 1_555 B MG MG . A MG 1201 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc3 A OD1 ASP 211 A ASP 1012 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc4 A OD2 ASP 211 A ASP 1012 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc5 A OD1 ASP 211 A ASP 1012 1_555 B MG MG . A MG 1201 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc6 A OD2 ASP 211 A ASP 1012 1_555 B MG MG . A MG 1201 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? # _chem_comp.formula 'C21 H32 Cl2 N4 O' _chem_comp.formula_weight 427.411 _chem_comp.id 7RU _chem_comp.mon_nstd_flag . _chem_comp.name 3-[4-[2-[4-[2,3-bis(chloranyl)phenyl]piperazin-1-yl]ethyl]cyclohexyl]-1,1-dimethyl-urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Cariprazine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 7RU sing 1 n n O1 C3 7RU doub 2 n n N1 C3 7RU sing 3 n n N1 C1 7RU sing 4 n n C3 N2 7RU sing 5 n n C9 C4 7RU sing 6 n n C9 C8 7RU sing 7 n n N2 C4 7RU sing 8 n n C4 C5 7RU sing 9 n n C8 C7 7RU sing 10 n n C5 C6 7RU sing 11 n n C7 C6 7RU sing 12 n n C7 C10 7RU sing 13 n n C10 C11 7RU sing 14 n n C11 N3 7RU sing 15 n n N3 C12 7RU sing 16 n n N3 C15 7RU sing 17 n n C12 C13 7RU sing 18 n n C15 C14 7RU sing 19 n n C13 N4 7RU sing 20 n n C14 N4 7RU sing 21 n n N4 C16 7RU sing 22 n n C16 C21 7RU doub 23 n y C16 C17 7RU sing 24 n y C21 C20 7RU sing 25 n y CL2 C17 7RU sing 26 n n C17 C18 7RU doub 27 n y C20 C19 7RU doub 28 n y C18 C19 7RU sing 29 n y C18 CL1 7RU sing 30 n n C4 H2 7RU sing 31 n n C5 H3 7RU sing 32 n n C5 H4 7RU sing 33 n n C6 H5 7RU sing 34 n n C6 H6 7RU sing 35 n n C7 H7 7RU sing 36 n n C8 H8 7RU sing 37 n n C8 H9 7RU sing 38 n n C10 H10 7RU sing 39 n n C10 H11 7RU sing 40 n n C13 H12 7RU sing 41 n n C13 H13 7RU sing 42 n n C15 H14 7RU sing 43 n n C15 H15 7RU sing 44 n n C20 H16 7RU sing 45 n n C21 H17 7RU sing 46 n n C1 H18 7RU sing 47 n n C1 H19 7RU sing 48 n n C1 H20 7RU sing 49 n n C11 H21 7RU sing 50 n n C11 H22 7RU sing 51 n n C12 H23 7RU sing 52 n n C12 H24 7RU sing 53 n n C14 H25 7RU sing 54 n n C14 H26 7RU sing 55 n n C19 H27 7RU sing 56 n n C2 H28 7RU sing 57 n n C2 H29 7RU sing 58 n n C2 H30 7RU sing 59 n n C9 H31 7RU sing 60 n n C9 H32 7RU sing 61 n n N2 H33 7RU sing 62 n n # _atom_sites.entry_id 7VOD _atom_sites.fract_transf_matrix[1][1] 0.019893 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1201 901 MG MG . C 3 CLR A 1 1202 1401 CLR CLR . D 3 CLR A 1 1203 1701 CLR CLR . E 4 OLC A 1 1204 2001 OLC OLC . F 4 OLC A 1 1205 2101 OLC OLC . G 4 OLC A 1 1206 2201 OLC OLC . H 3 CLR A 1 1207 2301 CLR CLR . I 5 7RU A 1 1208 2501 7RU LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 7RU . . . I 5 -34.836 -12.468 135.187 1 103.96 ? N1 7RU 1208 A 1 HETATM 2 N N3 7RU . . . I 5 -27.026 -12.319 141.757 1 129.06 ? N3 7RU 1208 A 1 HETATM 3 C C4 7RU . . . I 5 -32.234 -12 137.963 1 131.51 ? C4 7RU 1208 A 1 HETATM 4 C C5 7RU . . . I 5 -32.111 -12.824 139.254 1 136.59 ? C5 7RU 1208 A 1 HETATM 5 C C6 7RU . . . I 5 -31.036 -12.265 140.188 1 124.45 ? C6 7RU 1208 A 1 HETATM 6 C C7 7RU . . . I 5 -29.691 -12.177 139.461 1 120.74 ? C7 7RU 1208 A 1 HETATM 7 C C8 7RU . . . I 5 -29.81 -11.511 138.084 1 132.83 ? C8 7RU 1208 A 1 HETATM 8 C C10 7RU . . . I 5 -28.721 -11.339 140.32 1 109 ? C10 7RU 1208 A 1 HETATM 9 C C13 7RU . . . I 5 -26.433 -14.038 143.333 1 144.81 ? C13 7RU 1208 A 1 HETATM 10 C C15 7RU . . . I 5 -27.716 -11.667 142.757 1 139.92 ? C15 7RU 1208 A 1 HETATM 11 C C17 7RU . . . I 5 -26.65 -14.472 146.707 1 204.69 ? C17 7RU 1208 A 1 HETATM 12 C C20 7RU . . . I 5 -24.264 -13.153 147.188 1 121.4 ? C20 7RU 1208 A 1 HETATM 13 C C21 7RU . . . I 5 -24.944 -12.914 146.014 1 136.09 ? C21 7RU 1208 A 1 HETATM 14 C C1 7RU . . . I 5 -35.953 -12.992 135.919 1 89.81 ? C1 7RU 1208 A 1 HETATM 15 C C11 7RU . . . I 5 -27.349 -12.027 140.525 1 102.92 ? C11 7RU 1208 A 1 HETATM 16 C C12 7RU . . . I 5 -27.03 -13.665 141.968 1 141.28 ? C12 7RU 1208 A 1 HETATM 17 C C14 7RU . . . I 5 -27.048 -11.866 144.114 1 144.01 ? C14 7RU 1208 A 1 HETATM 18 C C16 7RU . . . I 5 -26.155 -13.555 145.762 1 178.11 ? C16 7RU 1208 A 1 HETATM 19 C C18 7RU . . . I 5 -25.962 -14.716 147.857 1 177.76 ? C18 7RU 1208 A 1 HETATM 20 C C19 7RU . . . I 5 -24.767 -14.057 148.115 1 142 ? C19 7RU 1208 A 1 HETATM 21 C C2 7RU . . . I 5 -34.777 -12.147 133.752 1 112.39 ? C2 7RU 1208 A 1 HETATM 22 C C3 7RU . . . I 5 -33.67 -12.106 135.737 1 116.53 ? C3 7RU 1208 A 1 HETATM 23 C C9 7RU . . . I 5 -30.925 -12.059 137.188 1 128.68 ? C9 7RU 1208 A 1 HETATM 24 N N2 7RU . . . I 5 -33.455 -12.335 137.193 1 127.39 ? N2 7RU 1208 A 1 HETATM 25 N N4 7RU . . . I 5 -26.856 -13.258 144.493 1 166.79 ? N4 7RU 1208 A 1 HETATM 26 O O1 7RU . . . I 5 -32.731 -11.671 135.174 1 122.35 ? O1 7RU 1208 A 1 HETATM 27 CL CL1 7RU . . . I 5 -26.798 -15.914 148.893 1 197.23 ? CL1 7RU 1208 A 1 HETATM 28 CL CL2 7RU . . . I 5 -28.154 -15.447 146.677 1 220.53 ? CL2 7RU 1208 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #