data_7VOY # _model_server_result.job_id EPMZJUqeafkFJ2TEeDK4ow _model_server_result.datetime_utc '2025-03-03 04:48:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7voy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KB","auth_seq_id":101}' # _entry.id 7VOY # _exptl.entry_id 7VOY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 911.504 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BACTERIOCHLOROPHYLL A' _entity.pdbx_number_of_molecules 38 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VOY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VOY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 37-meric _pdbx_struct_assembly.oligomeric_count 37 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 LA N N ? 6 MA N N ? 6 NA N N ? 6 OA N N ? 6 PA N N ? 6 QA N N ? 6 RA N N ? 6 SA N N ? 6 TA N N ? 6 UA N N ? 6 VA N N ? 6 WA N N ? 6 XA N N ? 6 YA N N ? 6 ZA N N ? 6 AB N N ? 6 BB N N ? 6 CB N N ? 6 DB N N ? 6 EB N N ? 6 FB N N ? 6 GB N N ? 6 HB N N ? 6 IB N N ? 6 JB N N ? 6 KB N N ? 6 LB N N ? 6 MB N N ? 6 NB N N ? 6 OB N N ? 6 PB N N ? 6 QB N N ? 6 RB N N ? 6 SB N N ? 6 TB N N ? 6 WB N N ? 6 YB N N ? 6 ZB N N # _chem_comp.formula 'C55 H74 Mg N4 O6' _chem_comp.formula_weight 911.504 _chem_comp.id BCL _chem_comp.mon_nstd_flag . _chem_comp.name 'BACTERIOCHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MG NA BCL sing 70 n n MG NB BCL sing 71 n n MG NC BCL sing 72 n n MG ND BCL sing 73 n n CHA C1A BCL sing 74 n n CHA C4D BCL doub 75 n n CHA CBD BCL sing 76 n n CHB C4A BCL doub 77 n n CHB C1B BCL sing 78 n n CHB HHB BCL sing 79 n n CHC C4B BCL sing 80 n n CHC C1C BCL doub 81 n n CHC HHC BCL sing 82 n n CHD C4C BCL sing 83 n n CHD C1D BCL doub 84 n n CHD HHD BCL sing 85 n n NA C1A BCL doub 86 n n NA C4A BCL sing 87 n n C1A C2A BCL sing 88 n n C2A C3A BCL sing 89 n n C2A CAA BCL sing 90 n n C2A H2A BCL sing 91 n n C3A C4A BCL sing 92 n n C3A CMA BCL sing 93 n n C3A H3A BCL sing 94 n n CMA HMA1 BCL sing 95 n n CMA HMA2 BCL sing 96 n n CMA HMA3 BCL sing 97 n n CAA CBA BCL sing 98 n n CAA HAA1 BCL sing 99 n n CAA HAA2 BCL sing 100 n n CBA CGA BCL sing 101 n n CBA HBA1 BCL sing 102 n n CBA HBA2 BCL sing 103 n n CGA O1A BCL doub 104 n n CGA O2A BCL sing 105 n n O2A C1 BCL sing 106 n n NB C1B BCL sing 107 n y NB C4B BCL sing 108 n y C1B C2B BCL doub 109 n y C2B C3B BCL sing 110 n y C2B CMB BCL sing 111 n n C3B C4B BCL doub 112 n y C3B CAB BCL sing 113 n n CMB HMB1 BCL sing 114 n n CMB HMB2 BCL sing 115 n n CMB HMB3 BCL sing 116 n n CAB OBB BCL doub 117 n n CAB CBB BCL sing 118 n n CBB HBB1 BCL sing 119 n n CBB HBB2 BCL sing 120 n n CBB HBB3 BCL sing 121 n n NC C1C BCL sing 122 n n NC C4C BCL doub 123 n n C1C C2C BCL sing 124 n n C2C C3C BCL sing 125 n n C2C CMC BCL sing 126 n n C2C H2C BCL sing 127 n n C3C C4C BCL sing 128 n n C3C CAC BCL sing 129 n n C3C H3C BCL sing 130 n n CMC HMC1 BCL sing 131 n n CMC HMC2 BCL sing 132 n n CMC HMC3 BCL sing 133 n n CAC CBC BCL sing 134 n n CAC HAC1 BCL sing 135 n n CAC HAC2 BCL sing 136 n n CBC HBC1 BCL sing 137 n n CBC HBC2 BCL sing 138 n n CBC HBC3 BCL sing 139 n n ND C1D BCL sing 140 n n ND C4D BCL sing 141 n n C1D C2D BCL sing 142 n n C2D C3D BCL doub 143 n n C2D CMD BCL sing 144 n n C3D C4D BCL sing 145 n n C3D CAD BCL sing 146 n n CMD HMD1 BCL sing 147 n n CMD HMD2 BCL sing 148 n n CMD HMD3 BCL sing 149 n n CAD OBD BCL doub 150 n n CAD CBD BCL sing 151 n n CBD CGD BCL sing 152 n n CBD HBD BCL sing 153 n n CGD O1D BCL doub 154 n n CGD O2D BCL sing 155 n n O2D CED BCL sing 156 n n CED HED1 BCL sing 157 n n CED HED2 BCL sing 158 n n CED HED3 BCL sing 159 n n C1 C2 BCL sing 160 n n C1 H11 BCL sing 161 n n C1 H12 BCL sing 162 n n C2 C3 BCL doub 163 e n C2 H2 BCL sing 164 n n C3 C4 BCL sing 165 n n C3 C5 BCL sing 166 n n C4 H41 BCL sing 167 n n C4 H42 BCL sing 168 n n C4 H43 BCL sing 169 n n C5 C6 BCL sing 170 n n C5 H51 BCL sing 171 n n C5 H52 BCL sing 172 n n C6 C7 BCL sing 173 n n C6 H61 BCL sing 174 n n C6 H62 BCL sing 175 n n C7 C8 BCL sing 176 n n C7 H71 BCL sing 177 n n C7 H72 BCL sing 178 n n C8 C9 BCL sing 179 n n C8 C10 BCL sing 180 n n C8 H8 BCL sing 181 n n C9 H91 BCL sing 182 n n C9 H92 BCL sing 183 n n C9 H93 BCL sing 184 n n C10 C11 BCL sing 185 n n C10 H101 BCL sing 186 n n C10 H102 BCL sing 187 n n C11 C12 BCL sing 188 n n C11 H111 BCL sing 189 n n C11 H112 BCL sing 190 n n C12 C13 BCL sing 191 n n C12 H121 BCL sing 192 n n C12 H122 BCL sing 193 n n C13 C14 BCL sing 194 n n C13 C15 BCL sing 195 n n C13 H13 BCL sing 196 n n C14 H141 BCL sing 197 n n C14 H142 BCL sing 198 n n C14 H143 BCL sing 199 n n C15 C16 BCL sing 200 n n C15 H151 BCL sing 201 n n C15 H152 BCL sing 202 n n C16 C17 BCL sing 203 n n C16 H161 BCL sing 204 n n C16 H162 BCL sing 205 n n C17 C18 BCL sing 206 n n C17 H171 BCL sing 207 n n C17 H172 BCL sing 208 n n C18 C19 BCL sing 209 n n C18 C20 BCL sing 210 n n C18 H18 BCL sing 211 n n C19 H191 BCL sing 212 n n C19 H192 BCL sing 213 n n C19 H193 BCL sing 214 n n C20 H201 BCL sing 215 n n C20 H202 BCL sing 216 n n C20 H203 BCL sing 217 n n # _atom_sites.entry_id 7VOY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code LA 6 BCL A 1 101 101 BCL BCL . MA 6 BCL B 1 101 101 BCL BCL . NA 6 BCL E 1 101 101 BCL BCL . OA 6 BCL E 1 102 101 BCL BCL . PA 6 BCL F 1 101 101 BCL BCL . QA 6 BCL G 1 101 101 BCL BCL . RA 6 BCL I 1 101 101 BCL BCL . SA 6 BCL J 1 101 101 BCL BCL . TA 6 BCL K 1 101 101 BCL BCL . UA 6 BCL N 1 101 101 BCL BCL . VA 6 BCL O 1 101 101 BCL BCL . WA 6 BCL P 1 101 101 BCL BCL . XA 6 BCL Q 1 101 101 BCL BCL . YA 6 BCL R 1 101 101 BCL BCL . ZA 6 BCL S 1 101 101 BCL BCL . AB 6 BCL T 1 101 101 BCL BCL . BB 6 BCL U 1 101 101 BCL BCL . CB 6 BCL V 1 101 101 BCL BCL . DB 6 BCL W 1 101 101 BCL BCL . EB 6 BCL X 1 101 101 BCL BCL . FB 6 BCL Y 1 101 101 BCL BCL . GB 6 BCL Z 1 101 101 BCL BCL . HB 6 BCL 1 1 101 101 BCL BCL . IB 6 BCL 2 1 101 101 BCL BCL . JB 6 BCL 7 1 101 101 BCL BCL . KB 6 BCL 8 1 101 101 BCL BCL . LB 6 BCL 9 1 101 101 BCL BCL . MB 6 BCL 0 1 101 101 BCL BCL . NB 6 BCL 4 1 101 101 BCL BCL . OB 6 BCL t 1 101 101 BCL BCL . PB 6 BCL 5 1 101 101 BCL BCL . QB 6 BCL 5 1 102 101 BCL BCL . RB 6 BCL C 1 101 101 BCL BCL . SB 6 BCL 3 1 101 101 BCL BCL . TB 6 BCL L 1 301 852 BCL BCL . UB 7 BPH L 1 302 856 BPH BPH . VB 8 U10 L 1 303 1401 U10 U10 . WB 6 BCL M 1 401 854 BCL BCL . XB 9 FE2 M 1 402 857 FE2 FE2 . YB 6 BCL M 1 403 402 BCL BCL . ZB 6 BCL M 1 404 853 BCL BCL . AC 7 BPH M 1 405 855 BPH BPH . BC 8 U10 M 1 406 858 U10 U10 . CC 10 SPN M 1 407 901 SPN SPN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG BCL . . . KB 6 114.463 90.116 111.151 1 51.12 ? MG BCL 101 8 1 HETATM 2 C CHA BCL . . . KB 6 114.035 90.682 114.511 1 51.12 ? CHA BCL 101 8 1 HETATM 3 C CHB BCL . . . KB 6 117.297 88.457 111.881 1 51.12 ? CHB BCL 101 8 1 HETATM 4 C CHC BCL . . . KB 6 115.329 90.302 107.913 1 51.12 ? CHC BCL 101 8 1 HETATM 5 C CHD BCL . . . KB 6 111.887 92.345 110.511 1 51.12 ? CHD BCL 101 8 1 HETATM 6 N NA BCL . . . KB 6 115.523 89.678 112.986 1 51.12 ? NA BCL 101 8 1 HETATM 7 C C1A BCL . . . KB 6 115.085 89.844 114.275 1 51.12 ? C1A BCL 101 8 1 HETATM 8 C C2A BCL . . . KB 6 115.93 89.095 115.248 1 51.12 ? C2A BCL 101 8 1 HETATM 9 C C3A BCL . . . KB 6 117.109 88.643 114.396 1 51.12 ? C3A BCL 101 8 1 HETATM 10 C C4A BCL . . . KB 6 116.607 88.826 113.013 1 51.12 ? C4A BCL 101 8 1 HETATM 11 C CMA BCL . . . KB 6 118.351 89.488 114.649 1 51.12 ? CMA BCL 101 8 1 HETATM 12 C CAA BCL . . . KB 6 115.19 87.927 115.88 1 51.12 ? CAA BCL 101 8 1 HETATM 13 C CBA BCL . . . KB 6 115.746 87.486 117.244 1 51.12 ? CBA BCL 101 8 1 HETATM 14 C CGA BCL . . . KB 6 117.149 87.001 117.251 1 51.12 ? CGA BCL 101 8 1 HETATM 15 O O1A BCL . . . KB 6 118.096 87.667 117.382 1 51.12 ? O1A BCL 101 8 1 HETATM 16 O O2A BCL . . . KB 6 117.259 85.714 117.102 1 51.12 ? O2A BCL 101 8 1 HETATM 17 N NB BCL . . . KB 6 116.124 89.603 110.07 1 51.12 ? NB BCL 101 8 1 HETATM 18 C C1B BCL . . . KB 6 117.027 88.653 110.527 1 51.12 ? C1B BCL 101 8 1 HETATM 19 C C2B BCL . . . KB 6 117.539 87.909 109.469 1 51.12 ? C2B BCL 101 8 1 HETATM 20 C C3B BCL . . . KB 6 116.984 88.414 108.309 1 51.12 ? C3B BCL 101 8 1 HETATM 21 C C4B BCL . . . KB 6 116.14 89.501 108.718 1 51.12 ? C4B BCL 101 8 1 HETATM 22 C CMB BCL . . . KB 6 118.51 86.773 109.641 1 51.12 ? CMB BCL 101 8 1 HETATM 23 C CAB BCL . . . KB 6 117.154 87.989 106.949 1 51.12 ? CAB BCL 101 8 1 HETATM 24 O OBB BCL . . . KB 6 116.192 87.705 106.217 1 51.12 ? OBB BCL 101 8 1 HETATM 25 C CBB BCL . . . KB 6 118.529 87.871 106.339 1 51.12 ? CBB BCL 101 8 1 HETATM 26 N NC BCL . . . KB 6 113.748 91.205 109.489 1 51.12 ? NC BCL 101 8 1 HETATM 27 C C1C BCL . . . KB 6 114.155 90.981 108.216 1 51.12 ? C1C BCL 101 8 1 HETATM 28 C C2C BCL . . . KB 6 113.258 91.558 107.195 1 51.12 ? C2C BCL 101 8 1 HETATM 29 C C3C BCL . . . KB 6 112.346 92.444 108.039 1 51.12 ? C3C BCL 101 8 1 HETATM 30 C C4C BCL . . . KB 6 112.588 91.926 109.413 1 51.12 ? C4C BCL 101 8 1 HETATM 31 C CMC BCL . . . KB 6 114.053 92.291 106.135 1 51.12 ? CMC BCL 101 8 1 HETATM 32 C CAC BCL . . . KB 6 110.863 92.33 107.692 1 51.12 ? CAC BCL 101 8 1 HETATM 33 C CBC BCL . . . KB 6 110.544 92.868 106.331 1 51.12 ? CBC BCL 101 8 1 HETATM 34 N ND BCL . . . KB 6 113.164 91.219 112.228 1 51.12 ? ND BCL 101 8 1 HETATM 35 C C1D BCL . . . KB 6 112.269 92.207 111.868 1 51.12 ? C1D BCL 101 8 1 HETATM 36 C C2D BCL . . . KB 6 111.85 92.944 112.988 1 51.12 ? C2D BCL 101 8 1 HETATM 37 C C3D BCL . . . KB 6 112.519 92.409 114.049 1 51.12 ? C3D BCL 101 8 1 HETATM 38 C C4D BCL . . . KB 6 113.286 91.376 113.571 1 51.12 ? C4D BCL 101 8 1 HETATM 39 C CMD BCL . . . KB 6 110.865 94.07 112.975 1 51.12 ? CMD BCL 101 8 1 HETATM 40 C CAD BCL . . . KB 6 112.605 92.351 115.441 1 51.12 ? CAD BCL 101 8 1 HETATM 41 O OBD BCL . . . KB 6 112.155 93.119 116.302 1 51.12 ? OBD BCL 101 8 1 HETATM 42 C CBD BCL . . . KB 6 113.407 91.1 115.833 1 51.12 ? CBD BCL 101 8 1 HETATM 43 C CGD BCL . . . KB 6 114.314 91.502 116.9 1 51.12 ? CGD BCL 101 8 1 HETATM 44 O O1D BCL . . . KB 6 114.801 92.594 116.975 1 51.12 ? O1D BCL 101 8 1 HETATM 45 O O2D BCL . . . KB 6 114.566 90.578 117.795 1 51.12 ? O2D BCL 101 8 1 HETATM 46 C CED BCL . . . KB 6 115.504 90.954 118.835 1 51.12 ? CED BCL 101 8 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 46 #