data_7VPC # _model_server_result.job_id 3b1I58uY-Vb1n41ARakQbw _model_server_result.datetime_utc '2024-11-27 17:01:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vpc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 7VPC # _exptl.entry_id 7VPC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MALATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.21 _cell.angle_gamma 90 _cell.entry_id 7VPC _cell.length_a 98.643 _cell.length_b 49.464 _cell.length_c 119.494 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VPC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,M 1 1 B,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 13 A CYS 54 1_555 B SG CYS 127 B CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? disulf ? disulf2 A SG CYS 23 A CYS 64 1_555 A SG CYS 200 A CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf3 A SG CYS 127 A CYS 168 1_555 B SG CYS 13 B CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 B SG CYS 23 B CYS 64 1_555 B SG CYS 200 B CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id MLT _chem_comp.mon_nstd_flag . _chem_comp.name D-MALATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MLT doub 246 n n C1 O2 MLT sing 247 n n C1 C2 MLT sing 248 n n C2 O3 MLT sing 249 n n C2 C3 MLT sing 250 n n C2 H2 MLT sing 251 n n O3 HO3 MLT sing 252 n n C3 C4 MLT sing 253 n n C3 H31 MLT sing 254 n n C3 H32 MLT sing 255 n n C4 O4 MLT doub 256 n n C4 O5 MLT sing 257 n n O5 HO5 MLT sing 258 n n O2 H6 MLT sing 259 n n # _atom_sites.entry_id 7VPC _atom_sites.fract_transf_matrix[1][1] 0.010138 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000213 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020217 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00837 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 401 305 EDO EDO . D 3 MLT A 1 402 306 MLT MLT . E 2 EDO A 1 403 307 EDO EDO . F 2 EDO A 1 404 308 EDO EDO . G 2 EDO A 1 405 401 EDO EDO . H 2 EDO A 1 406 501 EDO EDO . I 2 EDO B 1 401 304 EDO EDO . J 2 EDO B 1 402 305 EDO EDO . K 3 MLT B 1 403 306 MLT MLT . L 2 EDO B 1 404 307 EDO EDO . M 4 HOH A 1 501 167 HOH HOH . M 4 HOH A 2 502 43 HOH HOH . M 4 HOH A 3 503 106 HOH HOH . M 4 HOH A 4 504 120 HOH HOH . M 4 HOH A 5 505 52 HOH HOH . M 4 HOH A 6 506 113 HOH HOH . M 4 HOH A 7 507 220 HOH HOH . M 4 HOH A 8 508 377 HOH HOH . M 4 HOH A 9 509 25 HOH HOH . M 4 HOH A 10 510 48 HOH HOH . M 4 HOH A 11 511 112 HOH HOH . M 4 HOH A 12 512 139 HOH HOH . M 4 HOH A 13 513 231 HOH HOH . M 4 HOH A 14 514 56 HOH HOH . M 4 HOH A 15 515 72 HOH HOH . M 4 HOH A 16 516 69 HOH HOH . M 4 HOH A 17 517 400 HOH HOH . M 4 HOH A 18 518 196 HOH HOH . M 4 HOH A 19 519 73 HOH HOH . M 4 HOH A 20 520 96 HOH HOH . M 4 HOH A 21 521 271 HOH HOH . M 4 HOH A 22 522 84 HOH HOH . M 4 HOH A 23 523 6 HOH HOH . M 4 HOH A 24 524 103 HOH HOH . M 4 HOH A 25 525 240 HOH HOH . M 4 HOH A 26 526 195 HOH HOH . M 4 HOH A 27 527 115 HOH HOH . M 4 HOH A 28 528 226 HOH HOH . M 4 HOH A 29 529 31 HOH HOH . M 4 HOH A 30 530 75 HOH HOH . M 4 HOH A 31 531 333 HOH HOH . M 4 HOH A 32 532 126 HOH HOH . M 4 HOH A 33 533 18 HOH HOH . M 4 HOH A 34 534 35 HOH HOH . M 4 HOH A 35 535 20 HOH HOH . M 4 HOH A 36 536 10 HOH HOH . M 4 HOH A 37 537 227 HOH HOH . M 4 HOH A 38 538 94 HOH HOH . M 4 HOH A 39 539 13 HOH HOH . M 4 HOH A 40 540 121 HOH HOH . M 4 HOH A 41 541 79 HOH HOH . M 4 HOH A 42 542 15 HOH HOH . M 4 HOH A 43 543 214 HOH HOH . M 4 HOH A 44 544 346 HOH HOH . M 4 HOH A 45 545 175 HOH HOH . M 4 HOH A 46 546 212 HOH HOH . M 4 HOH A 47 547 64 HOH HOH . M 4 HOH A 48 548 58 HOH HOH . M 4 HOH A 49 549 230 HOH HOH . M 4 HOH A 50 550 65 HOH HOH . M 4 HOH A 51 551 2 HOH HOH . M 4 HOH A 52 552 78 HOH HOH . M 4 HOH A 53 553 147 HOH HOH . M 4 HOH A 54 554 225 HOH HOH . M 4 HOH A 55 555 3 HOH HOH . M 4 HOH A 56 556 211 HOH HOH . M 4 HOH A 57 557 71 HOH HOH . M 4 HOH A 58 558 176 HOH HOH . M 4 HOH A 59 559 22 HOH HOH . M 4 HOH A 60 560 132 HOH HOH . M 4 HOH A 61 561 21 HOH HOH . M 4 HOH A 62 562 50 HOH HOH . M 4 HOH A 63 563 177 HOH HOH . M 4 HOH A 64 564 247 HOH HOH . M 4 HOH A 65 565 33 HOH HOH . M 4 HOH A 66 566 62 HOH HOH . M 4 HOH A 67 567 70 HOH HOH . M 4 HOH A 68 568 164 HOH HOH . M 4 HOH A 69 569 8 HOH HOH . M 4 HOH A 70 570 338 HOH HOH . M 4 HOH A 71 571 11 HOH HOH . M 4 HOH A 72 572 257 HOH HOH . M 4 HOH A 73 573 39 HOH HOH . M 4 HOH A 74 574 286 HOH HOH . M 4 HOH A 75 575 42 HOH HOH . M 4 HOH A 76 576 351 HOH HOH . M 4 HOH A 77 577 16 HOH HOH . M 4 HOH A 78 578 41 HOH HOH . M 4 HOH A 79 579 83 HOH HOH . M 4 HOH A 80 580 98 HOH HOH . M 4 HOH A 81 581 441 HOH HOH . M 4 HOH A 82 582 357 HOH HOH . M 4 HOH A 83 583 228 HOH HOH . M 4 HOH A 84 584 45 HOH HOH . M 4 HOH A 85 585 149 HOH HOH . M 4 HOH A 86 586 186 HOH HOH . M 4 HOH A 87 587 82 HOH HOH . M 4 HOH A 88 588 398 HOH HOH . M 4 HOH A 89 589 206 HOH HOH . M 4 HOH A 90 590 99 HOH HOH . M 4 HOH A 91 591 422 HOH HOH . M 4 HOH A 92 592 128 HOH HOH . M 4 HOH A 93 593 391 HOH HOH . M 4 HOH A 94 594 169 HOH HOH . M 4 HOH A 95 595 294 HOH HOH . M 4 HOH A 96 596 229 HOH HOH . M 4 HOH A 97 597 110 HOH HOH . M 4 HOH A 98 598 140 HOH HOH . M 4 HOH A 99 599 127 HOH HOH . M 4 HOH A 100 600 137 HOH HOH . M 4 HOH A 101 601 49 HOH HOH . M 4 HOH A 102 602 197 HOH HOH . M 4 HOH A 103 603 150 HOH HOH . M 4 HOH A 104 604 253 HOH HOH . M 4 HOH A 105 605 148 HOH HOH . M 4 HOH A 106 606 419 HOH HOH . M 4 HOH A 107 607 145 HOH HOH . M 4 HOH A 108 608 427 HOH HOH . M 4 HOH A 109 609 417 HOH HOH . M 4 HOH A 110 610 151 HOH HOH . M 4 HOH A 111 611 146 HOH HOH . N 4 HOH B 1 501 108 HOH HOH . N 4 HOH B 2 502 153 HOH HOH . N 4 HOH B 3 503 172 HOH HOH . N 4 HOH B 4 504 101 HOH HOH . N 4 HOH B 5 505 12 HOH HOH . N 4 HOH B 6 506 32 HOH HOH . N 4 HOH B 7 507 122 HOH HOH . N 4 HOH B 8 508 76 HOH HOH . N 4 HOH B 9 509 201 HOH HOH . N 4 HOH B 10 510 105 HOH HOH . N 4 HOH B 11 511 7 HOH HOH . N 4 HOH B 12 512 24 HOH HOH . N 4 HOH B 13 513 232 HOH HOH . N 4 HOH B 14 514 131 HOH HOH . N 4 HOH B 15 515 249 HOH HOH . N 4 HOH B 16 516 44 HOH HOH . N 4 HOH B 17 517 74 HOH HOH . N 4 HOH B 18 518 81 HOH HOH . N 4 HOH B 19 519 107 HOH HOH . N 4 HOH B 20 520 19 HOH HOH . N 4 HOH B 21 521 111 HOH HOH . N 4 HOH B 22 522 272 HOH HOH . N 4 HOH B 23 523 162 HOH HOH . N 4 HOH B 24 524 234 HOH HOH . N 4 HOH B 25 525 102 HOH HOH . N 4 HOH B 26 526 46 HOH HOH . N 4 HOH B 27 527 53 HOH HOH . N 4 HOH B 28 528 321 HOH HOH . N 4 HOH B 29 529 14 HOH HOH . N 4 HOH B 30 530 223 HOH HOH . N 4 HOH B 31 531 40 HOH HOH . N 4 HOH B 32 532 125 HOH HOH . N 4 HOH B 33 533 95 HOH HOH . N 4 HOH B 34 534 194 HOH HOH . N 4 HOH B 35 535 163 HOH HOH . N 4 HOH B 36 536 160 HOH HOH . N 4 HOH B 37 537 67 HOH HOH . N 4 HOH B 38 538 28 HOH HOH . N 4 HOH B 39 539 157 HOH HOH . N 4 HOH B 40 540 204 HOH HOH . N 4 HOH B 41 541 88 HOH HOH . N 4 HOH B 42 542 1 HOH HOH . N 4 HOH B 43 543 123 HOH HOH . N 4 HOH B 44 544 155 HOH HOH . N 4 HOH B 45 545 200 HOH HOH . N 4 HOH B 46 546 104 HOH HOH . N 4 HOH B 47 547 9 HOH HOH . N 4 HOH B 48 548 63 HOH HOH . N 4 HOH B 49 549 55 HOH HOH . N 4 HOH B 50 550 440 HOH HOH . N 4 HOH B 51 551 420 HOH HOH . N 4 HOH B 52 552 159 HOH HOH . N 4 HOH B 53 553 30 HOH HOH . N 4 HOH B 54 554 38 HOH HOH . N 4 HOH B 55 555 29 HOH HOH . N 4 HOH B 56 556 136 HOH HOH . N 4 HOH B 57 557 26 HOH HOH . N 4 HOH B 58 558 47 HOH HOH . N 4 HOH B 59 559 23 HOH HOH . N 4 HOH B 60 560 250 HOH HOH . N 4 HOH B 61 561 109 HOH HOH . N 4 HOH B 62 562 124 HOH HOH . N 4 HOH B 63 563 189 HOH HOH . N 4 HOH B 64 564 86 HOH HOH . N 4 HOH B 65 565 57 HOH HOH . N 4 HOH B 66 566 34 HOH HOH . N 4 HOH B 67 567 66 HOH HOH . N 4 HOH B 68 568 5 HOH HOH . N 4 HOH B 69 569 97 HOH HOH . N 4 HOH B 70 570 17 HOH HOH . N 4 HOH B 71 571 269 HOH HOH . N 4 HOH B 72 572 320 HOH HOH . N 4 HOH B 73 573 426 HOH HOH . N 4 HOH B 74 574 308 HOH HOH . N 4 HOH B 75 575 264 HOH HOH . N 4 HOH B 76 576 114 HOH HOH . N 4 HOH B 77 577 307 HOH HOH . N 4 HOH B 78 578 90 HOH HOH . N 4 HOH B 79 579 437 HOH HOH . N 4 HOH B 80 580 143 HOH HOH . N 4 HOH B 81 581 428 HOH HOH . N 4 HOH B 82 582 141 HOH HOH . N 4 HOH B 83 583 130 HOH HOH . N 4 HOH B 84 584 439 HOH HOH . N 4 HOH B 85 585 436 HOH HOH . N 4 HOH B 86 586 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLT . . . D 3 20.911 -18.027 -43.769 1 78.86 ? C1 MLT 402 A 1 HETATM 2 O O1 MLT . . . D 3 21.566 -17.795 -44.819 1 81.19 ? O1 MLT 402 A 1 HETATM 3 O O2 MLT . . . D 3 20.315 -19.116 -43.59 1 63.44 ? O2 MLT 402 A 1 HETATM 4 C C2 MLT . . . D 3 20.839 -16.946 -42.714 1 82.82 ? C2 MLT 402 A 1 HETATM 5 O O3 MLT . . . D 3 21.997 -16.954 -41.857 1 78.3 ? O3 MLT 402 A 1 HETATM 6 C C3 MLT . . . D 3 19.58 -17.104 -41.871 1 81.45 ? C3 MLT 402 A 1 HETATM 7 C C4 MLT . . . D 3 19.732 -16.249 -40.64 1 91.38 ? C4 MLT 402 A 1 HETATM 8 O O4 MLT . . . D 3 19.9 -15.006 -40.761 1 102.28 ? O4 MLT 402 A 1 HETATM 9 O O5 MLT . . . D 3 19.691 -16.844 -39.544 1 93.13 ? O5 MLT 402 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 9 #