data_7VPJ # _model_server_result.job_id GHN8cWMig2NyeUqY7VYwbQ _model_server_result.datetime_utc '2024-10-15 11:22:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vpj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1202}' # _entry.id 7VPJ # _exptl.entry_id 7VPJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VPJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VPJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND2 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 1037 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 1033 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id NAG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NAG _struct_conn.ptnr2_auth_seq_id 1203 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.416 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7VPJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1201 1200 MG MG . C 3 ADP A 1 1202 1201 ADP ADP . D 4 NAG A 1 1203 1301 NAG NAG . E 5 ALF A 1 1204 1401 ALF ALF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 87.617 85.415 55.029 1 81.09 ? PB ADP 1202 A 1 HETATM 2 O O1B ADP . . . C 3 87.51 84.296 54.049 1 81.96 ? O1B ADP 1202 A 1 HETATM 3 O O2B ADP . . . C 3 87.961 84.91 56.387 1 80.64 ? O2B ADP 1202 A 1 HETATM 4 O O3B ADP . . . C 3 88.522 86.52 54.55 1 82.65 ? O3B ADP 1202 A 1 HETATM 5 P PA ADP . . . C 3 85.491 87.379 54.483 1 84.54 ? PA ADP 1202 A 1 HETATM 6 O O1A ADP . . . C 3 84.039 87.37 54.828 1 85.32 ? O1A ADP 1202 A 1 HETATM 7 O O2A ADP . . . C 3 86.266 88.597 54.86 1 84.8 ? O2A ADP 1202 A 1 HETATM 8 O O3A ADP . . . C 3 86.162 86.079 55.135 1 82.49 ? O3A ADP 1202 A 1 HETATM 9 O O5' ADP . . . C 3 85.718 87.081 52.923 1 89.56 ? O5' ADP 1202 A 1 HETATM 10 C C5' ADP . . . C 3 84.626 86.748 52.025 1 94.08 ? C5' ADP 1202 A 1 HETATM 11 C C4' ADP . . . C 3 85.107 85.818 50.937 1 96.59 ? C4' ADP 1202 A 1 HETATM 12 O O4' ADP . . . C 3 85.328 86.579 49.723 1 99.1 ? O4' ADP 1202 A 1 HETATM 13 C C3' ADP . . . C 3 86.421 85.06 51.177 1 98 ? C3' ADP 1202 A 1 HETATM 14 O O3' ADP . . . C 3 86.195 83.882 51.934 1 97.6 ? O3' ADP 1202 A 1 HETATM 15 C C2' ADP . . . C 3 86.875 84.799 49.742 1 100.27 ? C2' ADP 1202 A 1 HETATM 16 O O2' ADP . . . C 3 86.209 83.692 49.171 1 101.43 ? O2' ADP 1202 A 1 HETATM 17 C C1' ADP . . . C 3 86.485 86.116 49.066 1 102.21 ? C1' ADP 1202 A 1 HETATM 18 N N9 ADP . . . C 3 87.492 87.176 49.116 1 106.58 ? N9 ADP 1202 A 1 HETATM 19 C C8 ADP . . . C 3 88.487 87.376 50.046 1 108.44 ? C8 ADP 1202 A 1 HETATM 20 N N7 ADP . . . C 3 89.252 88.405 49.805 1 110.87 ? N7 ADP 1202 A 1 HETATM 21 C C5 ADP . . . C 3 88.719 88.951 48.652 1 112.31 ? C5 ADP 1202 A 1 HETATM 22 C C6 ADP . . . C 3 89.082 90.084 47.891 1 113.61 ? C6 ADP 1202 A 1 HETATM 23 N N6 ADP . . . C 3 90.098 90.881 48.213 1 113.66 ? N6 ADP 1202 A 1 HETATM 24 N N1 ADP . . . C 3 88.341 90.368 46.784 1 114.59 ? N1 ADP 1202 A 1 HETATM 25 C C2 ADP . . . C 3 87.316 89.553 46.477 1 114.7 ? C2 ADP 1202 A 1 HETATM 26 N N3 ADP . . . C 3 86.889 88.459 47.115 1 113.24 ? N3 ADP 1202 A 1 HETATM 27 C C4 ADP . . . C 3 87.635 88.203 48.212 1 110.93 ? C4 ADP 1202 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #