data_7VPP # _model_server_result.job_id 4Is5LJ9vl9p3DmGis2QYxQ _model_server_result.datetime_utc '2024-10-23 12:16:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vpp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1001}' # _entry.id 7VPP # _exptl.entry_id 7VPP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VPP _cell.length_a 186.643 _cell.length_b 186.643 _cell.length_c 173.823 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VPP _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 N N N ? 5 U N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n D NAG 1 D 1 NAG D 8 NAG 3 n D NAG 2 D 2 NAG D 9 NAG 3 n E NAG 1 E 1 NAG D 10 NAG 3 n E NAG 2 E 2 NAG D 11 NAG 3 n F NAG 1 F 1 NAG D 13 NAG 3 n F NAG 2 F 2 NAG D 14 NAG 3 n G NAG 1 G 1 NAG D 16 NAG 3 n G NAG 2 G 2 NAG D 17 NAG 3 n H NAG 1 H 1 NAG D 18 NAG 3 n H NAG 2 H 2 NAG D 19 NAG 3 n I NAG 1 I 1 NAG D 20 NAG 3 n I NAG 2 I 2 NAG D 21 NAG 3 n J NAG 1 J 1 NAG D 22 NAG 3 n J NAG 2 J 2 NAG D 23 NAG 3 n K NAG 1 K 1 NAG D 24 NAG 3 n K NAG 2 K 2 NAG D 25 NAG 4 n L NAG 1 L 1 NAG D 26 NAG 4 n L NAG 2 L 2 NAG D 27 NAG 3 n M NAG 1 M 1 NAG D 28 NAG 3 n M NAG 2 M 2 NAG D 29 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 701 A CYS 758 1_555 A SG CYS 708 A CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 738 A CYS 795 1_555 A SG CYS 774 A CYS 831 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 50 B CYS 349 1_555 B SG CYS 53 B CYS 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 C SG CYS 701 C CYS 758 1_555 C SG CYS 708 C CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 C SG CYS 738 C CYS 795 1_555 C SG CYS 774 C CYS 831 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 25 A ASN 82 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 A ND2 ASN 67 A ASN 124 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 A ND2 ASN 172 A ASN 229 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 A ND2 ASN 180 A ASN 237 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 A ND2 ASN 257 A ASN 314 1_555 S C1 NAG . A NAG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 A ND2 ASN 449 A ASN 506 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale7 A ND2 ASN 565 A ASN 622 1_555 R C1 NAG . A NAG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale8 B ND2 ASN 12 B ASN 311 1_555 T C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale9 C ND2 ASN 25 C ASN 82 1_555 X C1 NAG . C NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale10 C ND2 ASN 67 C ASN 124 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale11 C ND2 ASN 172 C ASN 229 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale12 C ND2 ASN 180 C ASN 237 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale13 C ND2 ASN 257 C ASN 314 1_555 Y C1 NAG . C NAG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale14 C ND2 ASN 449 C ASN 506 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale15 C ND2 ASN 565 C ASN 622 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale16 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale17 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale18 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale19 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale20 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale21 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale22 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale23 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale24 L O3 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale25 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? metalc ? metalc1 A NE2 HIS 326 A HIS 383 1_555 N ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc2 A NE2 HIS 330 A HIS 387 1_555 N ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc3 A OE1 GLU 349 A GLU 406 1_555 N ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? metalc ? metalc4 A OE2 GLU 349 A GLU 406 1_555 N ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc5 N ZN ZN . A ZN 1001 1_555 Z O HOH . A HOH 1118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc6 C NE2 HIS 326 C HIS 383 1_555 U ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc7 C NE2 HIS 330 C HIS 387 1_555 U ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc8 C OE1 GLU 349 C GLU 406 1_555 U ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc9 U ZN ZN . C ZN 1001 1_555 AA O HOH . C HOH 1116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7VPP _atom_sites.fract_transf_matrix[1][1] 0.005358 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005358 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 5 ZN A 1 1001 2 ZN ZN . O 6 GOL A 1 1002 3 GOL GOL . P 6 GOL A 1 1003 4 GOL GOL . Q 6 GOL A 1 1004 7 GOL GOL . R 7 NAG A 1 1005 12 NAG NAG . S 7 NAG A 1 1006 15 NAG NAG . T 7 NAG B 1 501 32 NAG NAG . U 5 ZN C 1 1001 1 ZN ZN . V 6 GOL C 1 1002 5 GOL GOL . W 6 GOL C 1 1003 6 GOL GOL . X 7 NAG C 1 1004 30 NAG NAG . Y 7 NAG C 1 1005 31 NAG NAG . Z 8 HOH A 1 1101 9 HOH HOH . Z 8 HOH A 2 1102 10 HOH HOH . Z 8 HOH A 3 1103 4 HOH HOH . Z 8 HOH A 4 1104 6 HOH HOH . Z 8 HOH A 5 1105 13 HOH HOH . Z 8 HOH A 6 1106 3 HOH HOH . Z 8 HOH A 7 1107 11 HOH HOH . Z 8 HOH A 8 1108 25 HOH HOH . Z 8 HOH A 9 1109 8 HOH HOH . Z 8 HOH A 10 1110 21 HOH HOH . Z 8 HOH A 11 1111 33 HOH HOH . Z 8 HOH A 12 1112 1 HOH HOH . Z 8 HOH A 13 1113 12 HOH HOH . Z 8 HOH A 14 1114 31 HOH HOH . Z 8 HOH A 15 1115 17 HOH HOH . Z 8 HOH A 16 1116 34 HOH HOH . Z 8 HOH A 17 1117 27 HOH HOH . Z 8 HOH A 18 1118 32 HOH HOH . AA 8 HOH C 1 1101 14 HOH HOH . AA 8 HOH C 2 1102 24 HOH HOH . AA 8 HOH C 3 1103 28 HOH HOH . AA 8 HOH C 4 1104 15 HOH HOH . AA 8 HOH C 5 1105 30 HOH HOH . AA 8 HOH C 6 1106 7 HOH HOH . AA 8 HOH C 7 1107 20 HOH HOH . AA 8 HOH C 8 1108 16 HOH HOH . AA 8 HOH C 9 1109 23 HOH HOH . AA 8 HOH C 10 1110 5 HOH HOH . AA 8 HOH C 11 1111 35 HOH HOH . AA 8 HOH C 12 1112 29 HOH HOH . AA 8 HOH C 13 1113 2 HOH HOH . AA 8 HOH C 14 1114 19 HOH HOH . AA 8 HOH C 15 1115 26 HOH HOH . AA 8 HOH C 16 1116 18 HOH HOH . AA 8 HOH C 17 1117 22 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 5 _atom_site.Cartn_x -54.906 _atom_site.Cartn_y 19.628 _atom_site.Cartn_z -4.369 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 1 #