data_7VPR # _model_server_result.job_id YX2RRbPoVVfK9nhSul_zFQ _model_server_result.datetime_utc '2024-11-13 19:56:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vpr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 7VPR # _exptl.entry_id 7VPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.648 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ERGOSTEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.282 _cell.angle_gamma 90 _cell.entry_id 7VPR _cell.length_a 55.423 _cell.length_b 105.626 _cell.length_c 98.872 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 178 A CYS 792 1_555 A SG CYS 179 A CYS 793 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? disulf ? disulf2 B SG CYS 178 B CYS 792 1_555 B SG CYS 179 B CYS 793 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? # _chem_comp.formula 'C28 H44 O' _chem_comp.formula_weight 396.648 _chem_comp.id ERG _chem_comp.mon_nstd_flag . _chem_comp.name ERGOSTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ERG sing 83 n n C1 C10 ERG sing 84 n n C1 H11 ERG sing 85 n n C1 H12 ERG sing 86 n n C2 C3 ERG sing 87 n n C2 H21 ERG sing 88 n n C2 H22A ERG sing 89 n n C3 C4 ERG sing 90 n n C3 O1 ERG sing 91 n n C3 H3 ERG sing 92 n n C4 C5 ERG sing 93 n n C4 H41 ERG sing 94 n n C4 H42 ERG sing 95 n n C5 C6 ERG doub 96 n n C5 C10 ERG sing 97 n n C6 C7 ERG sing 98 n n C6 H6 ERG sing 99 n n C7 C8 ERG doub 100 n n C7 H7 ERG sing 101 n n C8 C9 ERG sing 102 n n C8 C14 ERG sing 103 n n C9 C10 ERG sing 104 n n C9 C11 ERG sing 105 n n C9 H9 ERG sing 106 n n C10 C19 ERG sing 107 n n C11 C12 ERG sing 108 n n C11 H111 ERG sing 109 n n C11 H112 ERG sing 110 n n C12 C13 ERG sing 111 n n C12 H121 ERG sing 112 n n C12 H122 ERG sing 113 n n C13 C14 ERG sing 114 n n C13 C17 ERG sing 115 n n C13 C18 ERG sing 116 n n C14 C15 ERG sing 117 n n C14 H14 ERG sing 118 n n C15 C16 ERG sing 119 n n C15 H151 ERG sing 120 n n C15 H152 ERG sing 121 n n C16 C17 ERG sing 122 n n C16 H161 ERG sing 123 n n C16 H162 ERG sing 124 n n C17 C20 ERG sing 125 n n C17 H17 ERG sing 126 n n C18 H181 ERG sing 127 n n C18 H182 ERG sing 128 n n C18 H183 ERG sing 129 n n C19 H191 ERG sing 130 n n C19 H192 ERG sing 131 n n C19 H193 ERG sing 132 n n C20 C21 ERG sing 133 n n C20 C22 ERG sing 134 n n C20 H20 ERG sing 135 n n C21 H211 ERG sing 136 n n C21 H212 ERG sing 137 n n C21 H213 ERG sing 138 n n C22 C23 ERG doub 139 e n C22 H22 ERG sing 140 n n C23 C24 ERG sing 141 n n C23 H23 ERG sing 142 n n C24 C25 ERG sing 143 n n C24 C28 ERG sing 144 n n C24 H24 ERG sing 145 n n C25 C26 ERG sing 146 n n C25 C27 ERG sing 147 n n C25 H25 ERG sing 148 n n C26 H261 ERG sing 149 n n C26 H262 ERG sing 150 n n C26 H263 ERG sing 151 n n C27 H271 ERG sing 152 n n C27 H272 ERG sing 153 n n C27 H273 ERG sing 154 n n C28 H281 ERG sing 155 n n C28 H282 ERG sing 156 n n C28 H283 ERG sing 157 n n O1 HO1 ERG sing 158 n n # _atom_sites.entry_id 7VPR _atom_sites.fract_transf_matrix[1][1] 0.018043 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001035 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010131 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ERG A 1 1001 1001 ERG ERG . F 2 ERG B 1 1001 1002 ERG ERG . G 2 ERG C 1 1001 1003 ERG ERG . H 2 ERG D 1 1001 1004 ERG ERG . I 3 HOH A 1 1101 38 HOH HOH . I 3 HOH A 2 1102 85 HOH HOH . I 3 HOH A 3 1103 30 HOH HOH . I 3 HOH A 4 1104 61 HOH HOH . I 3 HOH A 5 1105 31 HOH HOH . I 3 HOH A 6 1106 18 HOH HOH . I 3 HOH A 7 1107 42 HOH HOH . I 3 HOH A 8 1108 46 HOH HOH . I 3 HOH A 9 1109 13 HOH HOH . I 3 HOH A 10 1110 84 HOH HOH . I 3 HOH A 11 1111 33 HOH HOH . I 3 HOH A 12 1112 69 HOH HOH . I 3 HOH A 13 1113 75 HOH HOH . I 3 HOH A 14 1114 21 HOH HOH . I 3 HOH A 15 1115 81 HOH HOH . I 3 HOH A 16 1116 64 HOH HOH . J 3 HOH B 1 1101 50 HOH HOH . J 3 HOH B 2 1102 86 HOH HOH . J 3 HOH B 3 1103 3 HOH HOH . J 3 HOH B 4 1104 66 HOH HOH . J 3 HOH B 5 1105 24 HOH HOH . J 3 HOH B 6 1106 19 HOH HOH . J 3 HOH B 7 1107 53 HOH HOH . J 3 HOH B 8 1108 37 HOH HOH . J 3 HOH B 9 1109 80 HOH HOH . J 3 HOH B 10 1110 60 HOH HOH . J 3 HOH B 11 1111 62 HOH HOH . J 3 HOH B 12 1112 70 HOH HOH . J 3 HOH B 13 1113 17 HOH HOH . J 3 HOH B 14 1114 74 HOH HOH . J 3 HOH B 15 1115 11 HOH HOH . J 3 HOH B 16 1116 10 HOH HOH . J 3 HOH B 17 1117 28 HOH HOH . J 3 HOH B 18 1118 7 HOH HOH . J 3 HOH B 19 1119 22 HOH HOH . J 3 HOH B 20 1120 58 HOH HOH . J 3 HOH B 21 1121 45 HOH HOH . J 3 HOH B 22 1122 87 HOH HOH . K 3 HOH C 1 1101 14 HOH HOH . K 3 HOH C 2 1102 5 HOH HOH . K 3 HOH C 3 1103 55 HOH HOH . K 3 HOH C 4 1104 65 HOH HOH . K 3 HOH C 5 1105 25 HOH HOH . K 3 HOH C 6 1106 36 HOH HOH . K 3 HOH C 7 1107 49 HOH HOH . K 3 HOH C 8 1108 41 HOH HOH . K 3 HOH C 9 1109 67 HOH HOH . K 3 HOH C 10 1110 47 HOH HOH . K 3 HOH C 11 1111 44 HOH HOH . K 3 HOH C 12 1112 40 HOH HOH . K 3 HOH C 13 1113 72 HOH HOH . K 3 HOH C 14 1114 6 HOH HOH . L 3 HOH D 1 1101 9 HOH HOH . L 3 HOH D 2 1102 73 HOH HOH . L 3 HOH D 3 1103 27 HOH HOH . L 3 HOH D 4 1104 26 HOH HOH . L 3 HOH D 5 1105 20 HOH HOH . L 3 HOH D 6 1106 82 HOH HOH . L 3 HOH D 7 1107 39 HOH HOH . L 3 HOH D 8 1108 63 HOH HOH . L 3 HOH D 9 1109 78 HOH HOH . L 3 HOH D 10 1110 34 HOH HOH . L 3 HOH D 11 1111 68 HOH HOH . L 3 HOH D 12 1112 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ERG . . . E 2 13.743 -1.651 -20.397 1 40.31 ? C1 ERG 1001 A 1 HETATM 2 C C2 ERG . . . E 2 13.058 -2.851 -21.047 1 40.04 ? C2 ERG 1001 A 1 HETATM 3 C C3 ERG . . . E 2 11.623 -2.47 -21.295 1 38.87 ? C3 ERG 1001 A 1 HETATM 4 C C4 ERG . . . E 2 11.546 -1.252 -22.218 1 42.66 ? C4 ERG 1001 A 1 HETATM 5 C C5 ERG . . . E 2 12.352 -0.159 -21.751 1 38.81 ? C5 ERG 1001 A 1 HETATM 6 C C6 ERG . . . E 2 11.934 1.139 -22.011 1 39.65 ? C6 ERG 1001 A 1 HETATM 7 C C7 ERG . . . E 2 12.688 2.269 -21.653 1 36.41 ? C7 ERG 1001 A 1 HETATM 8 C C8 ERG . . . E 2 13.925 2.127 -21.017 1 34.72 ? C8 ERG 1001 A 1 HETATM 9 C C9 ERG . . . E 2 14.288 0.834 -20.537 1 38.93 ? C9 ERG 1001 A 1 HETATM 10 C C10 ERG . . . E 2 13.664 -0.387 -21.264 1 32.66 ? C10 ERG 1001 A 1 HETATM 11 C C11 ERG . . . E 2 15.844 0.645 -20.285 1 36.23 ? C11 ERG 1001 A 1 HETATM 12 C C12 ERG . . . E 2 16.513 1.894 -19.701 1 36.4 ? C12 ERG 1001 A 1 HETATM 13 C C13 ERG . . . E 2 16.186 3.089 -20.619 1 39.21 ? C13 ERG 1001 A 1 HETATM 14 C C14 ERG . . . E 2 14.654 3.271 -20.511 1 31.9 ? C14 ERG 1001 A 1 HETATM 15 C C15 ERG . . . E 2 14.45 4.602 -21.206 1 40.26 ? C15 ERG 1001 A 1 HETATM 16 C C16 ERG . . . E 2 15.686 5.446 -20.782 1 36.83 ? C16 ERG 1001 A 1 HETATM 17 C C17 ERG . . . E 2 16.62 4.444 -20.052 1 36.4 ? C17 ERG 1001 A 1 HETATM 18 C C18 ERG . . . E 2 16.693 2.894 -22.065 1 39.14 ? C18 ERG 1001 A 1 HETATM 19 C C19 ERG . . . E 2 14.485 -0.604 -22.566 1 36.92 ? C19 ERG 1001 A 1 HETATM 20 C C20 ERG . . . E 2 18.087 4.886 -20.244 1 32.59 ? C20 ERG 1001 A 1 HETATM 21 C C21 ERG . . . E 2 19.115 3.935 -19.641 1 40.99 ? C21 ERG 1001 A 1 HETATM 22 C C22 ERG . . . E 2 18.208 6.242 -19.56 1 36.5 ? C22 ERG 1001 A 1 HETATM 23 C C23 ERG . . . E 2 18.466 7.477 -20.364 1 24.83 ? C23 ERG 1001 A 1 HETATM 24 C C24 ERG . . . E 2 18.547 8.831 -19.661 1 33.85 ? C24 ERG 1001 A 1 HETATM 25 C C25 ERG . . . E 2 20.004 9.313 -19.704 1 37.95 ? C25 ERG 1001 A 1 HETATM 26 C C26 ERG . . . E 2 20.389 9.562 -21.167 1 35.2 ? C26 ERG 1001 A 1 HETATM 27 C C27 ERG . . . E 2 20.983 8.272 -19.136 1 34.89 ? C27 ERG 1001 A 1 HETATM 28 C C28 ERG . . . E 2 17.627 9.771 -20.414 1 33.17 ? C28 ERG 1001 A 1 HETATM 29 O O1 ERG . . . E 2 10.885 -3.601 -21.883 1 43.59 ? O1 ERG 1001 A 1 HETATM 30 H H11 ERG . . . E 2 13.26 -1.45 -19.44 1 48.5 ? H11 ERG 1001 A 1 HETATM 31 H H12 ERG . . . E 2 14.8 -1.905 -20.333 1 48.5 ? H12 ERG 1001 A 1 HETATM 32 H H21 ERG . . . E 2 13.522 -2.98 -22.025 1 48.17 ? H21 ERG 1001 A 1 HETATM 33 H H22A ERG . . . E 2 13.106 -3.714 -20.383 1 48.17 ? H22A ERG 1001 A 1 HETATM 34 H H3 ERG . . . E 2 11.165 -2.205 -20.342 1 46.77 ? H3 ERG 1001 A 1 HETATM 35 H H41 ERG . . . E 2 11.895 -1.542 -23.209 1 51.32 ? H41 ERG 1001 A 1 HETATM 36 H H42 ERG . . . E 2 10.511 -0.918 -22.184 1 51.32 ? H42 ERG 1001 A 1 HETATM 37 H H6 ERG . . . E 2 10.978 1.289 -22.515 1 47.7 ? H6 ERG 1001 A 1 HETATM 38 H H7 ERG . . . E 2 12.305 3.265 -21.873 1 43.81 ? H7 ERG 1001 A 1 HETATM 39 H H9 ERG . . . E 2 13.862 0.779 -19.535 1 46.84 ? H9 ERG 1001 A 1 HETATM 40 H H111 ERG . . . E 2 16.322 0.407 -21.234 1 43.61 ? H111 ERG 1001 A 1 HETATM 41 H H112 ERG . . . E 2 15.923 -0.126 -19.52 1 43.61 ? H112 ERG 1001 A 1 HETATM 42 H H121 ERG . . . E 2 16.132 2.082 -18.697 1 43.81 ? H121 ERG 1001 A 1 HETATM 43 H H122 ERG . . . E 2 17.59 1.731 -19.778 1 43.81 ? H122 ERG 1001 A 1 HETATM 44 H H14 ERG . . . E 2 14.412 3.404 -19.456 1 38.41 ? H14 ERG 1001 A 1 HETATM 45 H H151 ERG . . . E 2 13.525 5.075 -20.875 1 48.43 ? H151 ERG 1001 A 1 HETATM 46 H H152 ERG . . . E 2 14.548 4.423 -22.278 1 48.43 ? H152 ERG 1001 A 1 HETATM 47 H H161 ERG . . . E 2 16.183 5.867 -21.655 1 44.32 ? H161 ERG 1001 A 1 HETATM 48 H H162 ERG . . . E 2 15.336 6.155 -20.031 1 44.32 ? H162 ERG 1001 A 1 HETATM 49 H H17 ERG . . . E 2 16.386 4.468 -18.987 1 43.8 ? H17 ERG 1001 A 1 HETATM 50 H H181 ERG . . . E 2 16.367 1.923 -22.439 1 47.09 ? H181 ERG 1001 A 1 HETATM 51 H H182 ERG . . . E 2 17.782 2.94 -22.079 1 47.09 ? H182 ERG 1001 A 1 HETATM 52 H H183 ERG . . . E 2 16.24 3.718 -22.618 1 47.09 ? H183 ERG 1001 A 1 HETATM 53 H H191 ERG . . . E 2 14.428 0.293 -23.184 1 44.43 ? H191 ERG 1001 A 1 HETATM 54 H H192 ERG . . . E 2 14.073 -1.45 -23.116 1 44.43 ? H192 ERG 1001 A 1 HETATM 55 H H193 ERG . . . E 2 15.497 -0.798 -22.212 1 44.43 ? H193 ERG 1001 A 1 HETATM 56 H H20 ERG . . . E 2 18.286 5.002 -21.31 1 39.23 ? H20 ERG 1001 A 1 HETATM 57 H H211 ERG . . . E 2 18.92 3.819 -18.574 1 49.31 ? H211 ERG 1001 A 1 HETATM 58 H H212 ERG . . . E 2 20.115 4.344 -19.784 1 49.31 ? H212 ERG 1001 A 1 HETATM 59 H H213 ERG . . . E 2 18.972 3.004 -20.186 1 49.31 ? H213 ERG 1001 A 1 HETATM 60 H H22 ERG . . . E 2 18.103 6.315 -18.478 1 43.92 ? H22 ERG 1001 A 1 HETATM 61 H H23 ERG . . . E 2 18.596 7.411 -21.444 1 29.92 ? H23 ERG 1001 A 1 HETATM 62 H H24 ERG . . . E 2 18.22 8.733 -18.625 1 40.75 ? H24 ERG 1001 A 1 HETATM 63 H H25 ERG . . . E 2 20.098 10.241 -19.14 1 45.67 ? H25 ERG 1001 A 1 HETATM 64 H H261 ERG . . . E 2 20.295 8.633 -21.731 1 42.36 ? H261 ERG 1001 A 1 HETATM 65 H H262 ERG . . . E 2 21.418 9.916 -21.216 1 42.36 ? H262 ERG 1001 A 1 HETATM 66 H H263 ERG . . . E 2 19.68 10.317 -21.505 1 42.36 ? H263 ERG 1001 A 1 HETATM 67 H H271 ERG . . . E 2 20.892 7.342 -19.699 1 42 ? H271 ERG 1001 A 1 HETATM 68 H H272 ERG . . . E 2 20.749 8.086 -18.088 1 42 ? H272 ERG 1001 A 1 HETATM 69 H H273 ERG . . . E 2 21.963 8.732 -19.262 1 42 ? H273 ERG 1001 A 1 HETATM 70 H H281 ERG . . . E 2 17.966 9.861 -21.447 1 39.93 ? H281 ERG 1001 A 1 HETATM 71 H H282 ERG . . . E 2 17.644 10.752 -19.94 1 39.93 ? H282 ERG 1001 A 1 HETATM 72 H H283 ERG . . . E 2 16.645 9.3 -20.345 1 39.93 ? H283 ERG 1001 A 1 HETATM 73 H HO1 ERG . . . E 2 11.299 -3.851 -22.759 1 52.44 ? HO1 ERG 1001 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 73 #