data_7VPR # _model_server_result.job_id Q4RAsgINDUqzPvEzYQAlQQ _model_server_result.datetime_utc '2024-11-13 20:08:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vpr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1001}' # _entry.id 7VPR # _exptl.entry_id 7VPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.648 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ERGOSTEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.282 _cell.angle_gamma 90 _cell.entry_id 7VPR _cell.length_a 55.423 _cell.length_b 105.626 _cell.length_c 98.872 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 178 A CYS 792 1_555 A SG CYS 179 A CYS 793 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? disulf ? disulf2 B SG CYS 178 B CYS 792 1_555 B SG CYS 179 B CYS 793 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? # _chem_comp.formula 'C28 H44 O' _chem_comp.formula_weight 396.648 _chem_comp.id ERG _chem_comp.mon_nstd_flag . _chem_comp.name ERGOSTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ERG sing 83 n n C1 C10 ERG sing 84 n n C1 H11 ERG sing 85 n n C1 H12 ERG sing 86 n n C2 C3 ERG sing 87 n n C2 H21 ERG sing 88 n n C2 H22A ERG sing 89 n n C3 C4 ERG sing 90 n n C3 O1 ERG sing 91 n n C3 H3 ERG sing 92 n n C4 C5 ERG sing 93 n n C4 H41 ERG sing 94 n n C4 H42 ERG sing 95 n n C5 C6 ERG doub 96 n n C5 C10 ERG sing 97 n n C6 C7 ERG sing 98 n n C6 H6 ERG sing 99 n n C7 C8 ERG doub 100 n n C7 H7 ERG sing 101 n n C8 C9 ERG sing 102 n n C8 C14 ERG sing 103 n n C9 C10 ERG sing 104 n n C9 C11 ERG sing 105 n n C9 H9 ERG sing 106 n n C10 C19 ERG sing 107 n n C11 C12 ERG sing 108 n n C11 H111 ERG sing 109 n n C11 H112 ERG sing 110 n n C12 C13 ERG sing 111 n n C12 H121 ERG sing 112 n n C12 H122 ERG sing 113 n n C13 C14 ERG sing 114 n n C13 C17 ERG sing 115 n n C13 C18 ERG sing 116 n n C14 C15 ERG sing 117 n n C14 H14 ERG sing 118 n n C15 C16 ERG sing 119 n n C15 H151 ERG sing 120 n n C15 H152 ERG sing 121 n n C16 C17 ERG sing 122 n n C16 H161 ERG sing 123 n n C16 H162 ERG sing 124 n n C17 C20 ERG sing 125 n n C17 H17 ERG sing 126 n n C18 H181 ERG sing 127 n n C18 H182 ERG sing 128 n n C18 H183 ERG sing 129 n n C19 H191 ERG sing 130 n n C19 H192 ERG sing 131 n n C19 H193 ERG sing 132 n n C20 C21 ERG sing 133 n n C20 C22 ERG sing 134 n n C20 H20 ERG sing 135 n n C21 H211 ERG sing 136 n n C21 H212 ERG sing 137 n n C21 H213 ERG sing 138 n n C22 C23 ERG doub 139 e n C22 H22 ERG sing 140 n n C23 C24 ERG sing 141 n n C23 H23 ERG sing 142 n n C24 C25 ERG sing 143 n n C24 C28 ERG sing 144 n n C24 H24 ERG sing 145 n n C25 C26 ERG sing 146 n n C25 C27 ERG sing 147 n n C25 H25 ERG sing 148 n n C26 H261 ERG sing 149 n n C26 H262 ERG sing 150 n n C26 H263 ERG sing 151 n n C27 H271 ERG sing 152 n n C27 H272 ERG sing 153 n n C27 H273 ERG sing 154 n n C28 H281 ERG sing 155 n n C28 H282 ERG sing 156 n n C28 H283 ERG sing 157 n n O1 HO1 ERG sing 158 n n # _atom_sites.entry_id 7VPR _atom_sites.fract_transf_matrix[1][1] 0.018043 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001035 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010131 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ERG A 1 1001 1001 ERG ERG . F 2 ERG B 1 1001 1002 ERG ERG . G 2 ERG C 1 1001 1003 ERG ERG . H 2 ERG D 1 1001 1004 ERG ERG . I 3 HOH A 1 1101 38 HOH HOH . I 3 HOH A 2 1102 85 HOH HOH . I 3 HOH A 3 1103 30 HOH HOH . I 3 HOH A 4 1104 61 HOH HOH . I 3 HOH A 5 1105 31 HOH HOH . I 3 HOH A 6 1106 18 HOH HOH . I 3 HOH A 7 1107 42 HOH HOH . I 3 HOH A 8 1108 46 HOH HOH . I 3 HOH A 9 1109 13 HOH HOH . I 3 HOH A 10 1110 84 HOH HOH . I 3 HOH A 11 1111 33 HOH HOH . I 3 HOH A 12 1112 69 HOH HOH . I 3 HOH A 13 1113 75 HOH HOH . I 3 HOH A 14 1114 21 HOH HOH . I 3 HOH A 15 1115 81 HOH HOH . I 3 HOH A 16 1116 64 HOH HOH . J 3 HOH B 1 1101 50 HOH HOH . J 3 HOH B 2 1102 86 HOH HOH . J 3 HOH B 3 1103 3 HOH HOH . J 3 HOH B 4 1104 66 HOH HOH . J 3 HOH B 5 1105 24 HOH HOH . J 3 HOH B 6 1106 19 HOH HOH . J 3 HOH B 7 1107 53 HOH HOH . J 3 HOH B 8 1108 37 HOH HOH . J 3 HOH B 9 1109 80 HOH HOH . J 3 HOH B 10 1110 60 HOH HOH . J 3 HOH B 11 1111 62 HOH HOH . J 3 HOH B 12 1112 70 HOH HOH . J 3 HOH B 13 1113 17 HOH HOH . J 3 HOH B 14 1114 74 HOH HOH . J 3 HOH B 15 1115 11 HOH HOH . J 3 HOH B 16 1116 10 HOH HOH . J 3 HOH B 17 1117 28 HOH HOH . J 3 HOH B 18 1118 7 HOH HOH . J 3 HOH B 19 1119 22 HOH HOH . J 3 HOH B 20 1120 58 HOH HOH . J 3 HOH B 21 1121 45 HOH HOH . J 3 HOH B 22 1122 87 HOH HOH . K 3 HOH C 1 1101 14 HOH HOH . K 3 HOH C 2 1102 5 HOH HOH . K 3 HOH C 3 1103 55 HOH HOH . K 3 HOH C 4 1104 65 HOH HOH . K 3 HOH C 5 1105 25 HOH HOH . K 3 HOH C 6 1106 36 HOH HOH . K 3 HOH C 7 1107 49 HOH HOH . K 3 HOH C 8 1108 41 HOH HOH . K 3 HOH C 9 1109 67 HOH HOH . K 3 HOH C 10 1110 47 HOH HOH . K 3 HOH C 11 1111 44 HOH HOH . K 3 HOH C 12 1112 40 HOH HOH . K 3 HOH C 13 1113 72 HOH HOH . K 3 HOH C 14 1114 6 HOH HOH . L 3 HOH D 1 1101 9 HOH HOH . L 3 HOH D 2 1102 73 HOH HOH . L 3 HOH D 3 1103 27 HOH HOH . L 3 HOH D 4 1104 26 HOH HOH . L 3 HOH D 5 1105 20 HOH HOH . L 3 HOH D 6 1106 82 HOH HOH . L 3 HOH D 7 1107 39 HOH HOH . L 3 HOH D 8 1108 63 HOH HOH . L 3 HOH D 9 1109 78 HOH HOH . L 3 HOH D 10 1110 34 HOH HOH . L 3 HOH D 11 1111 68 HOH HOH . L 3 HOH D 12 1112 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ERG . . . F 2 52.449 67.406 -1.903 1 38.81 ? C1 ERG 1001 B 1 HETATM 2 C C2 ERG . . . F 2 53.365 68.622 -1.788 1 39.28 ? C2 ERG 1001 B 1 HETATM 3 C C3 ERG . . . F 2 54.484 68.254 -0.849 1 41.2 ? C3 ERG 1001 B 1 HETATM 4 C C4 ERG . . . F 2 55.262 67.054 -1.392 1 38.08 ? C4 ERG 1001 B 1 HETATM 5 C C5 ERG . . . F 2 54.407 65.948 -1.716 1 38.9 ? C5 ERG 1001 B 1 HETATM 6 C C6 ERG . . . F 2 54.898 64.657 -1.572 1 42.97 ? C6 ERG 1001 B 1 HETATM 7 C C7 ERG . . . F 2 54.159 63.517 -1.93 1 40.53 ? C7 ERG 1001 B 1 HETATM 8 C C8 ERG . . . F 2 52.876 63.64 -2.468 1 32.75 ? C8 ERG 1001 B 1 HETATM 9 C C9 ERG . . . F 2 52.252 64.921 -2.43 1 39.4 ? C9 ERG 1001 B 1 HETATM 10 C C10 ERG . . . F 2 53.187 66.159 -2.409 1 39.33 ? C10 ERG 1001 B 1 HETATM 11 C C11 ERG . . . F 2 51.056 65.095 -3.459 1 36.85 ? C11 ERG 1001 B 1 HETATM 12 C C12 ERG . . . F 2 50.201 63.833 -3.607 1 35.59 ? C12 ERG 1001 B 1 HETATM 13 C C13 ERG . . . F 2 51.136 62.657 -3.953 1 41.79 ? C13 ERG 1001 B 1 HETATM 14 C C14 ERG . . . F 2 52.04 62.481 -2.712 1 32.76 ? C14 ERG 1001 B 1 HETATM 15 C C15 ERG . . . F 2 52.728 61.165 -3.011 1 31.9 ? C15 ERG 1001 B 1 HETATM 16 C C16 ERG . . . F 2 51.625 60.306 -3.692 1 26.02 ? C16 ERG 1001 B 1 HETATM 17 C C17 ERG . . . F 2 50.448 61.289 -3.932 1 35.85 ? C17 ERG 1001 B 1 HETATM 18 C C18 ERG . . . F 2 51.916 62.875 -5.27 1 37.24 ? C18 ERG 1001 B 1 HETATM 19 C C19 ERG . . . F 2 53.655 66.395 -3.872 1 37.13 ? C19 ERG 1001 B 1 HETATM 20 C C20 ERG . . . F 2 49.66 60.842 -5.183 1 29.8 ? C20 ERG 1001 B 1 HETATM 21 C C21 ERG . . . F 2 48.522 61.775 -5.577 1 33.26 ? C21 ERG 1001 B 1 HETATM 22 C C22 ERG . . . F 2 49.084 59.472 -4.848 1 39.36 ? C22 ERG 1001 B 1 HETATM 23 C C23 ERG . . . F 2 49.556 58.251 -5.572 1 28.37 ? C23 ERG 1001 B 1 HETATM 24 C C24 ERG . . . F 2 48.989 56.883 -5.191 1 38.43 ? C24 ERG 1001 B 1 HETATM 25 C C25 ERG . . . F 2 48.096 56.395 -6.338 1 30.98 ? C25 ERG 1001 B 1 HETATM 26 C C26 ERG . . . F 2 48.974 56.171 -7.575 1 36.94 ? C26 ERG 1001 B 1 HETATM 27 C C27 ERG . . . F 2 47.013 57.419 -6.718 1 31.36 ? C27 ERG 1001 B 1 HETATM 28 C C28 ERG . . . F 2 50.175 55.964 -4.975 1 36.39 ? C28 ERG 1001 B 1 HETATM 29 O O1 ERG . . . F 2 55.388 69.4 -0.651 1 45.73 ? O1 ERG 1001 B 1 HETATM 30 H H11 ERG . . . F 2 52.03 67.191 -0.92 1 46.7 ? H11 ERG 1001 B 1 HETATM 31 H H12 ERG . . . F 2 51.717 67.653 -2.671 1 46.7 ? H12 ERG 1001 B 1 HETATM 32 H H21 ERG . . . F 2 53.815 68.766 -2.77 1 47.26 ? H21 ERG 1001 B 1 HETATM 33 H H22A ERG . . . F 2 52.81 69.472 -1.391 1 47.26 ? H22A ERG 1001 B 1 HETATM 34 H H3 ERG . . . F 2 54.052 67.974 0.113 1 49.56 ? H3 ERG 1001 B 1 HETATM 35 H H41 ERG . . . F 2 55.794 67.361 -2.292 1 45.82 ? H41 ERG 1001 B 1 HETATM 36 H H42 ERG . . . F 2 55.907 66.726 -0.578 1 45.82 ? H42 ERG 1001 B 1 HETATM 37 H H6 ERG . . . F 2 55.9 64.522 -1.165 1 51.69 ? H6 ERG 1001 B 1 HETATM 38 H H7 ERG . . . F 2 54.592 62.528 -1.785 1 48.76 ? H7 ERG 1001 B 1 HETATM 39 H H9 ERG . . . F 2 51.755 64.96 -1.46 1 47.41 ? H9 ERG 1001 B 1 HETATM 40 H H111 ERG . . . F 2 51.472 65.348 -4.433 1 44.34 ? H111 ERG 1001 B 1 HETATM 41 H H112 ERG . . . F 2 50.405 65.852 -3.023 1 44.34 ? H112 ERG 1001 B 1 HETATM 42 H H121 ERG . . . F 2 49.68 63.628 -2.671 1 42.83 ? H121 ERG 1001 B 1 HETATM 43 H H122 ERG . . . F 2 49.566 63.99 -4.48 1 42.83 ? H122 ERG 1001 B 1 HETATM 44 H H14 ERG . . . F 2 51.389 62.331 -1.849 1 39.44 ? H14 ERG 1001 B 1 HETATM 45 H H151 ERG . . . F 2 53.077 60.692 -2.093 1 38.41 ? H151 ERG 1001 B 1 HETATM 46 H H152 ERG . . . F 2 53.483 61.364 -3.773 1 38.41 ? H152 ERG 1001 B 1 HETATM 47 H H161 ERG . . . F 2 51.983 59.898 -4.636 1 31.34 ? H161 ERG 1001 B 1 HETATM 48 H H162 ERG . . . F 2 51.286 59.585 -2.946 1 31.34 ? H162 ERG 1001 B 1 HETATM 49 H H17 ERG . . . F 2 49.781 61.247 -3.069 1 43.15 ? H17 ERG 1001 B 1 HETATM 50 H H181 ERG . . . F 2 52.394 63.855 -5.252 1 44.81 ? H181 ERG 1001 B 1 HETATM 51 H H182 ERG . . . F 2 51.227 62.822 -6.112 1 44.81 ? H182 ERG 1001 B 1 HETATM 52 H H183 ERG . . . F 2 52.645 62.065 -5.283 1 44.81 ? H183 ERG 1001 B 1 HETATM 53 H H191 ERG . . . F 2 54.181 65.509 -4.232 1 44.69 ? H191 ERG 1001 B 1 HETATM 54 H H192 ERG . . . F 2 54.327 67.254 -3.903 1 44.69 ? H192 ERG 1001 B 1 HETATM 55 H H193 ERG . . . F 2 52.73 66.576 -4.42 1 44.69 ? H193 ERG 1001 B 1 HETATM 56 H H20 ERG . . . F 2 50.352 60.744 -6.021 1 35.89 ? H20 ERG 1001 B 1 HETATM 57 H H211 ERG . . . F 2 47.827 61.873 -4.742 1 40.04 ? H211 ERG 1001 B 1 HETATM 58 H H212 ERG . . . F 2 47.996 61.363 -6.439 1 40.04 ? H212 ERG 1001 B 1 HETATM 59 H H213 ERG . . . F 2 49.015 62.718 -5.811 1 40.04 ? H213 ERG 1001 B 1 HETATM 60 H H22 ERG . . . F 2 48.323 59.381 -4.074 1 47.36 ? H22 ERG 1001 B 1 HETATM 61 H H23 ERG . . . F 2 50.299 58.336 -6.363 1 34.17 ? H23 ERG 1001 B 1 HETATM 62 H H24 ERG . . . F 2 48.403 56.965 -4.275 1 46.25 ? H24 ERG 1001 B 1 HETATM 63 H H25 ERG . . . F 2 47.62 55.455 -6.056 1 37.3 ? H25 ERG 1001 B 1 HETATM 64 H H261 ERG . . . F 2 49.45 57.109 -7.859 1 44.46 ? H261 ERG 1001 B 1 HETATM 65 H H262 ERG . . . F 2 48.358 55.811 -8.398 1 44.46 ? H262 ERG 1001 B 1 HETATM 66 H H263 ERG . . . F 2 49.703 55.426 -7.253 1 44.46 ? H263 ERG 1001 B 1 HETATM 67 H H271 ERG . . . F 2 47.486 58.36 -7.002 1 37.76 ? H271 ERG 1001 B 1 HETATM 68 H H272 ERG . . . F 2 46.356 57.588 -5.864 1 37.76 ? H272 ERG 1001 B 1 HETATM 69 H H273 ERG . . . F 2 46.488 56.956 -7.553 1 37.76 ? H273 ERG 1001 B 1 HETATM 70 H H281 ERG . . . F 2 50.751 55.89 -5.899 1 43.79 ? H281 ERG 1001 B 1 HETATM 71 H H282 ERG . . . F 2 49.818 54.974 -4.691 1 43.79 ? H282 ERG 1001 B 1 HETATM 72 H H283 ERG . . . F 2 50.743 56.439 -4.176 1 43.79 ? H283 ERG 1001 B 1 HETATM 73 H HO1 ERG . . . F 2 55.789 69.663 -1.53 1 55 ? HO1 ERG 1001 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 73 #