data_7VPR # _model_server_result.job_id cQ83dVy80kotE6pg4S1RJw _model_server_result.datetime_utc '2024-12-01 09:15:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vpr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1001}' # _entry.id 7VPR # _exptl.entry_id 7VPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.648 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ERGOSTEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.282 _cell.angle_gamma 90 _cell.entry_id 7VPR _cell.length_a 55.423 _cell.length_b 105.626 _cell.length_c 98.872 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 178 A CYS 792 1_555 A SG CYS 179 A CYS 793 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? disulf ? disulf2 B SG CYS 178 B CYS 792 1_555 B SG CYS 179 B CYS 793 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? # _chem_comp.formula 'C28 H44 O' _chem_comp.formula_weight 396.648 _chem_comp.id ERG _chem_comp.mon_nstd_flag . _chem_comp.name ERGOSTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ERG sing 83 n n C1 C10 ERG sing 84 n n C1 H11 ERG sing 85 n n C1 H12 ERG sing 86 n n C2 C3 ERG sing 87 n n C2 H21 ERG sing 88 n n C2 H22A ERG sing 89 n n C3 C4 ERG sing 90 n n C3 O1 ERG sing 91 n n C3 H3 ERG sing 92 n n C4 C5 ERG sing 93 n n C4 H41 ERG sing 94 n n C4 H42 ERG sing 95 n n C5 C6 ERG doub 96 n n C5 C10 ERG sing 97 n n C6 C7 ERG sing 98 n n C6 H6 ERG sing 99 n n C7 C8 ERG doub 100 n n C7 H7 ERG sing 101 n n C8 C9 ERG sing 102 n n C8 C14 ERG sing 103 n n C9 C10 ERG sing 104 n n C9 C11 ERG sing 105 n n C9 H9 ERG sing 106 n n C10 C19 ERG sing 107 n n C11 C12 ERG sing 108 n n C11 H111 ERG sing 109 n n C11 H112 ERG sing 110 n n C12 C13 ERG sing 111 n n C12 H121 ERG sing 112 n n C12 H122 ERG sing 113 n n C13 C14 ERG sing 114 n n C13 C17 ERG sing 115 n n C13 C18 ERG sing 116 n n C14 C15 ERG sing 117 n n C14 H14 ERG sing 118 n n C15 C16 ERG sing 119 n n C15 H151 ERG sing 120 n n C15 H152 ERG sing 121 n n C16 C17 ERG sing 122 n n C16 H161 ERG sing 123 n n C16 H162 ERG sing 124 n n C17 C20 ERG sing 125 n n C17 H17 ERG sing 126 n n C18 H181 ERG sing 127 n n C18 H182 ERG sing 128 n n C18 H183 ERG sing 129 n n C19 H191 ERG sing 130 n n C19 H192 ERG sing 131 n n C19 H193 ERG sing 132 n n C20 C21 ERG sing 133 n n C20 C22 ERG sing 134 n n C20 H20 ERG sing 135 n n C21 H211 ERG sing 136 n n C21 H212 ERG sing 137 n n C21 H213 ERG sing 138 n n C22 C23 ERG doub 139 e n C22 H22 ERG sing 140 n n C23 C24 ERG sing 141 n n C23 H23 ERG sing 142 n n C24 C25 ERG sing 143 n n C24 C28 ERG sing 144 n n C24 H24 ERG sing 145 n n C25 C26 ERG sing 146 n n C25 C27 ERG sing 147 n n C25 H25 ERG sing 148 n n C26 H261 ERG sing 149 n n C26 H262 ERG sing 150 n n C26 H263 ERG sing 151 n n C27 H271 ERG sing 152 n n C27 H272 ERG sing 153 n n C27 H273 ERG sing 154 n n C28 H281 ERG sing 155 n n C28 H282 ERG sing 156 n n C28 H283 ERG sing 157 n n O1 HO1 ERG sing 158 n n # _atom_sites.entry_id 7VPR _atom_sites.fract_transf_matrix[1][1] 0.018043 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001035 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010131 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ERG A 1 1001 1001 ERG ERG . F 2 ERG B 1 1001 1002 ERG ERG . G 2 ERG C 1 1001 1003 ERG ERG . H 2 ERG D 1 1001 1004 ERG ERG . I 3 HOH A 1 1101 38 HOH HOH . I 3 HOH A 2 1102 85 HOH HOH . I 3 HOH A 3 1103 30 HOH HOH . I 3 HOH A 4 1104 61 HOH HOH . I 3 HOH A 5 1105 31 HOH HOH . I 3 HOH A 6 1106 18 HOH HOH . I 3 HOH A 7 1107 42 HOH HOH . I 3 HOH A 8 1108 46 HOH HOH . I 3 HOH A 9 1109 13 HOH HOH . I 3 HOH A 10 1110 84 HOH HOH . I 3 HOH A 11 1111 33 HOH HOH . I 3 HOH A 12 1112 69 HOH HOH . I 3 HOH A 13 1113 75 HOH HOH . I 3 HOH A 14 1114 21 HOH HOH . I 3 HOH A 15 1115 81 HOH HOH . I 3 HOH A 16 1116 64 HOH HOH . J 3 HOH B 1 1101 50 HOH HOH . J 3 HOH B 2 1102 86 HOH HOH . J 3 HOH B 3 1103 3 HOH HOH . J 3 HOH B 4 1104 66 HOH HOH . J 3 HOH B 5 1105 24 HOH HOH . J 3 HOH B 6 1106 19 HOH HOH . J 3 HOH B 7 1107 53 HOH HOH . J 3 HOH B 8 1108 37 HOH HOH . J 3 HOH B 9 1109 80 HOH HOH . J 3 HOH B 10 1110 60 HOH HOH . J 3 HOH B 11 1111 62 HOH HOH . J 3 HOH B 12 1112 70 HOH HOH . J 3 HOH B 13 1113 17 HOH HOH . J 3 HOH B 14 1114 74 HOH HOH . J 3 HOH B 15 1115 11 HOH HOH . J 3 HOH B 16 1116 10 HOH HOH . J 3 HOH B 17 1117 28 HOH HOH . J 3 HOH B 18 1118 7 HOH HOH . J 3 HOH B 19 1119 22 HOH HOH . J 3 HOH B 20 1120 58 HOH HOH . J 3 HOH B 21 1121 45 HOH HOH . J 3 HOH B 22 1122 87 HOH HOH . K 3 HOH C 1 1101 14 HOH HOH . K 3 HOH C 2 1102 5 HOH HOH . K 3 HOH C 3 1103 55 HOH HOH . K 3 HOH C 4 1104 65 HOH HOH . K 3 HOH C 5 1105 25 HOH HOH . K 3 HOH C 6 1106 36 HOH HOH . K 3 HOH C 7 1107 49 HOH HOH . K 3 HOH C 8 1108 41 HOH HOH . K 3 HOH C 9 1109 67 HOH HOH . K 3 HOH C 10 1110 47 HOH HOH . K 3 HOH C 11 1111 44 HOH HOH . K 3 HOH C 12 1112 40 HOH HOH . K 3 HOH C 13 1113 72 HOH HOH . K 3 HOH C 14 1114 6 HOH HOH . L 3 HOH D 1 1101 9 HOH HOH . L 3 HOH D 2 1102 73 HOH HOH . L 3 HOH D 3 1103 27 HOH HOH . L 3 HOH D 4 1104 26 HOH HOH . L 3 HOH D 5 1105 20 HOH HOH . L 3 HOH D 6 1106 82 HOH HOH . L 3 HOH D 7 1107 39 HOH HOH . L 3 HOH D 8 1108 63 HOH HOH . L 3 HOH D 9 1109 78 HOH HOH . L 3 HOH D 10 1110 34 HOH HOH . L 3 HOH D 11 1111 68 HOH HOH . L 3 HOH D 12 1112 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ERG . . . G 2 20.164 44.273 -69.264 1 47.03 ? C1 ERG 1001 C 1 HETATM 2 C C2 ERG . . . G 2 20.991 45.351 -69.964 1 43.44 ? C2 ERG 1001 C 1 HETATM 3 C C3 ERG . . . G 2 22.394 44.823 -70.1 1 47.03 ? C3 ERG 1001 C 1 HETATM 4 C C4 ERG . . . G 2 22.401 43.533 -70.924 1 44.23 ? C4 ERG 1001 C 1 HETATM 5 C C5 ERG . . . G 2 21.474 42.558 -70.423 1 40.96 ? C5 ERG 1001 C 1 HETATM 6 C C6 ERG . . . G 2 21.778 41.211 -70.562 1 45.09 ? C6 ERG 1001 C 1 HETATM 7 C C7 ERG . . . G 2 20.902 40.187 -70.165 1 47.95 ? C7 ERG 1001 C 1 HETATM 8 C C8 ERG . . . G 2 19.655 40.491 -69.612 1 44.14 ? C8 ERG 1001 C 1 HETATM 9 C C9 ERG . . . G 2 19.394 41.846 -69.252 1 45.6 ? C9 ERG 1001 C 1 HETATM 10 C C10 ERG . . . G 2 20.165 42.944 -70.03 1 45.28 ? C10 ERG 1001 C 1 HETATM 11 C C11 ERG . . . G 2 17.852 42.193 -69.102 1 40.56 ? C11 ERG 1001 C 1 HETATM 12 C C12 ERG . . . G 2 17.038 41.062 -68.467 1 36.87 ? C12 ERG 1001 C 1 HETATM 13 C C13 ERG . . . G 2 17.297 39.774 -69.274 1 40.9 ? C13 ERG 1001 C 1 HETATM 14 C C14 ERG . . . G 2 18.796 39.46 -69.066 1 40.06 ? C14 ERG 1001 C 1 HETATM 15 C C15 ERG . . . G 2 18.907 38.066 -69.648 1 39.96 ? C15 ERG 1001 C 1 HETATM 16 C C16 ERG . . . G 2 17.578 37.375 -69.232 1 33.32 ? C16 ERG 1001 C 1 HETATM 17 C C17 ERG . . . G 2 16.707 38.512 -68.632 1 35.52 ? C17 ERG 1001 C 1 HETATM 18 C C18 ERG . . . G 2 16.883 39.898 -70.757 1 37.53 ? C18 ERG 1001 C 1 HETATM 19 C C19 ERG . . . G 2 19.436 43.129 -71.39 1 40.7 ? C19 ERG 1001 C 1 HETATM 20 C C20 ERG . . . G 2 15.216 38.191 -68.874 1 37.11 ? C20 ERG 1001 C 1 HETATM 21 C C21 ERG . . . G 2 14.254 39.277 -68.403 1 43.02 ? C21 ERG 1001 C 1 HETATM 22 C C22 ERG . . . G 2 14.933 36.91 -68.101 1 40.89 ? C22 ERG 1001 C 1 HETATM 23 C C23 ERG . . . G 2 14.598 35.644 -68.825 1 36.13 ? C23 ERG 1001 C 1 HETATM 24 C C24 ERG . . . G 2 14.354 34.363 -68.027 1 40.47 ? C24 ERG 1001 C 1 HETATM 25 C C25 ERG . . . G 2 12.862 34.014 -68.117 1 38.99 ? C25 ERG 1001 C 1 HETATM 26 C C26 ERG . . . G 2 12.529 33.687 -69.578 1 40.39 ? C26 ERG 1001 C 1 HETATM 27 C C27 ERG . . . G 2 11.959 35.182 -67.686 1 44.88 ? C27 ERG 1001 C 1 HETATM 28 C C28 ERG . . . G 2 15.217 33.286 -68.656 1 36.77 ? C28 ERG 1001 C 1 HETATM 29 O O1 ERG . . . G 2 23.265 45.832 -70.726 1 42.73 ? O1 ERG 1001 C 1 HETATM 30 H H11 ERG . . . G 2 20.577 44.106 -68.27 1 56.56 ? H11 ERG 1001 C 1 HETATM 31 H H12 ERG . . . G 2 19.135 44.628 -69.281 1 56.56 ? H12 ERG 1001 C 1 HETATM 32 H H21 ERG . . . G 2 20.591 45.444 -70.973 1 52.25 ? H21 ERG 1001 C 1 HETATM 33 H H22A ERG . . . G 2 20.993 46.265 -69.368 1 52.25 ? H22A ERG 1001 C 1 HETATM 34 H H3 ERG . . . G 2 22.777 44.592 -69.105 1 56.56 ? H3 ERG 1001 C 1 HETATM 35 H H41 ERG . . . G 2 22.132 43.774 -71.952 1 53.2 ? H41 ERG 1001 C 1 HETATM 36 H H42 ERG . . . G 2 23.397 43.11 -70.806 1 53.2 ? H42 ERG 1001 C 1 HETATM 37 H H6 ERG . . . G 2 22.739 40.935 -70.998 1 54.23 ? H6 ERG 1001 C 1 HETATM 38 H H7 ERG . . . G 2 21.199 39.146 -70.288 1 57.67 ? H7 ERG 1001 C 1 HETATM 39 H H9 ERG . . . G 2 19.771 41.94 -68.234 1 54.84 ? H9 ERG 1001 C 1 HETATM 40 H H111 ERG . . . G 2 17.446 42.399 -70.093 1 48.79 ? H111 ERG 1001 C 1 HETATM 41 H H112 ERG . . . G 2 17.808 43.027 -68.403 1 48.79 ? H112 ERG 1001 C 1 HETATM 42 H H121 ERG . . . G 2 17.35 40.92 -67.432 1 44.37 ? H121 ERG 1001 C 1 HETATM 43 H H122 ERG . . . G 2 15.987 41.314 -68.617 1 44.37 ? H122 ERG 1001 C 1 HETATM 44 H H14 ERG . . . G 2 18.971 39.39 -67.991 1 48.2 ? H14 ERG 1001 C 1 HETATM 45 H H151 ERG . . . G 2 19.765 37.539 -69.23 1 48.08 ? H151 ERG 1001 C 1 HETATM 46 H H152 ERG . . . G 2 18.88 38.168 -70.733 1 48.08 ? H152 ERG 1001 C 1 HETATM 47 H H161 ERG . . . G 2 17.086 36.933 -70.099 1 40.11 ? H161 ERG 1001 C 1 HETATM 48 H H162 ERG . . . G 2 17.819 36.697 -68.412 1 40.11 ? H162 ERG 1001 C 1 HETATM 49 H H17 ERG . . . G 2 16.884 38.552 -67.557 1 42.75 ? H17 ERG 1001 C 1 HETATM 50 H H181 ERG . . . G 2 17.317 40.802 -71.182 1 45.16 ? H181 ERG 1001 C 1 HETATM 51 H H182 ERG . . . G 2 15.796 39.949 -70.828 1 45.16 ? H182 ERG 1001 C 1 HETATM 52 H H183 ERG . . . G 2 17.281 38.995 -71.221 1 45.16 ? H183 ERG 1001 C 1 HETATM 53 H H191 ERG . . . G 2 19.437 42.186 -71.935 1 48.96 ? H191 ERG 1001 C 1 HETATM 54 H H192 ERG . . . G 2 19.953 43.889 -71.977 1 48.96 ? H192 ERG 1001 C 1 HETATM 55 H H193 ERG . . . G 2 18.43 43.442 -71.109 1 48.96 ? H193 ERG 1001 C 1 HETATM 56 H H20 ERG . . . G 2 15.06 38.01 -69.938 1 44.66 ? H20 ERG 1001 C 1 HETATM 57 H H211 ERG . . . G 2 14.407 39.46 -67.339 1 51.75 ? H211 ERG 1001 C 1 HETATM 58 H H212 ERG . . . G 2 13.228 38.95 -68.572 1 51.75 ? H212 ERG 1001 C 1 HETATM 59 H H213 ERG . . . G 2 14.513 40.146 -69.008 1 51.75 ? H213 ERG 1001 C 1 HETATM 60 H H22 ERG . . . G 2 14.977 36.915 -67.012 1 49.2 ? H22 ERG 1001 C 1 HETATM 61 H H23 ERG . . . G 2 14.53 35.636 -69.912 1 43.48 ? H23 ERG 1001 C 1 HETATM 62 H H24 ERG . . . G 2 14.637 34.514 -66.985 1 48.69 ? H24 ERG 1001 C 1 HETATM 63 H H25 ERG . . . G 2 12.653 33.146 -67.494 1 46.91 ? H25 ERG 1001 C 1 HETATM 64 H H261 ERG . . . G 2 12.737 34.555 -70.203 1 48.59 ? H261 ERG 1001 C 1 HETATM 65 H H262 ERG . . . G 2 11.474 33.425 -69.659 1 48.59 ? H262 ERG 1001 C 1 HETATM 66 H H263 ERG . . . G 2 13.179 32.846 -69.818 1 48.59 ? H263 ERG 1001 C 1 HETATM 67 H H271 ERG . . . G 2 12.166 36.052 -68.31 1 53.98 ? H271 ERG 1001 C 1 HETATM 68 H H272 ERG . . . G 2 12.158 35.429 -66.643 1 53.98 ? H272 ERG 1001 C 1 HETATM 69 H H273 ERG . . . G 2 10.947 34.805 -67.832 1 53.98 ? H273 ERG 1001 C 1 HETATM 70 H H281 ERG . . . G 2 14.924 33.146 -69.696 1 44.25 ? H281 ERG 1001 C 1 HETATM 71 H H282 ERG . . . G 2 15.084 32.352 -68.112 1 44.25 ? H282 ERG 1001 C 1 HETATM 72 H H283 ERG . . . G 2 16.234 33.67 -68.567 1 44.25 ? H283 ERG 1001 C 1 HETATM 73 H HO1 ERG . . . G 2 22.921 46.047 -71.641 1 51.4 ? HO1 ERG 1001 C 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 73 #