data_7VPU # _model_server_result.job_id u85KPiC6mUE7zrm7_XRE9Q _model_server_result.datetime_utc '2024-11-17 02:58:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vpu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 7VPU # _exptl.entry_id 7VPU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.648 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ERGOSTEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.325 _cell.angle_gamma 90 _cell.entry_id 7VPU _cell.length_a 64.379 _cell.length_b 147.127 _cell.length_c 90.948 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VPU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F 1 1 C,D,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 199 A CYS 655 1_555 A SG CYS 267 A CYS 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf2 B SG CYS 199 B CYS 655 1_555 B SG CYS 267 B CYS 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? # _chem_comp.formula 'C28 H44 O' _chem_comp.formula_weight 396.648 _chem_comp.id ERG _chem_comp.mon_nstd_flag . _chem_comp.name ERGOSTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ERG sing 83 n n C1 C10 ERG sing 84 n n C1 H11 ERG sing 85 n n C1 H12 ERG sing 86 n n C2 C3 ERG sing 87 n n C2 H21 ERG sing 88 n n C2 H22A ERG sing 89 n n C3 C4 ERG sing 90 n n C3 O1 ERG sing 91 n n C3 H3 ERG sing 92 n n C4 C5 ERG sing 93 n n C4 H41 ERG sing 94 n n C4 H42 ERG sing 95 n n C5 C6 ERG doub 96 n n C5 C10 ERG sing 97 n n C6 C7 ERG sing 98 n n C6 H6 ERG sing 99 n n C7 C8 ERG doub 100 n n C7 H7 ERG sing 101 n n C8 C9 ERG sing 102 n n C8 C14 ERG sing 103 n n C9 C10 ERG sing 104 n n C9 C11 ERG sing 105 n n C9 H9 ERG sing 106 n n C10 C19 ERG sing 107 n n C11 C12 ERG sing 108 n n C11 H111 ERG sing 109 n n C11 H112 ERG sing 110 n n C12 C13 ERG sing 111 n n C12 H121 ERG sing 112 n n C12 H122 ERG sing 113 n n C13 C14 ERG sing 114 n n C13 C17 ERG sing 115 n n C13 C18 ERG sing 116 n n C14 C15 ERG sing 117 n n C14 H14 ERG sing 118 n n C15 C16 ERG sing 119 n n C15 H151 ERG sing 120 n n C15 H152 ERG sing 121 n n C16 C17 ERG sing 122 n n C16 H161 ERG sing 123 n n C16 H162 ERG sing 124 n n C17 C20 ERG sing 125 n n C17 H17 ERG sing 126 n n C18 H181 ERG sing 127 n n C18 H182 ERG sing 128 n n C18 H183 ERG sing 129 n n C19 H191 ERG sing 130 n n C19 H192 ERG sing 131 n n C19 H193 ERG sing 132 n n C20 C21 ERG sing 133 n n C20 C22 ERG sing 134 n n C20 H20 ERG sing 135 n n C21 H211 ERG sing 136 n n C21 H212 ERG sing 137 n n C21 H213 ERG sing 138 n n C22 C23 ERG doub 139 e n C22 H22 ERG sing 140 n n C23 C24 ERG sing 141 n n C23 H23 ERG sing 142 n n C24 C25 ERG sing 143 n n C24 C28 ERG sing 144 n n C24 H24 ERG sing 145 n n C25 C26 ERG sing 146 n n C25 C27 ERG sing 147 n n C25 H25 ERG sing 148 n n C26 H261 ERG sing 149 n n C26 H262 ERG sing 150 n n C26 H263 ERG sing 151 n n C27 H271 ERG sing 152 n n C27 H272 ERG sing 153 n n C27 H273 ERG sing 154 n n C28 H281 ERG sing 155 n n C28 H282 ERG sing 156 n n C28 H283 ERG sing 157 n n O1 HO1 ERG sing 158 n n # _atom_sites.entry_id 7VPU _atom_sites.fract_transf_matrix[1][1] 0.015533 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005145 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ERG A 1 801 801 ERG ERG . F 2 ERG B 1 801 801 ERG ERG . G 2 ERG C 1 801 801 ERG ERG . H 2 ERG D 1 801 801 ERG ERG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ERG . . . E 2 -18.738 -11.258 -12.449 1 53.46 ? C1 ERG 801 A 1 HETATM 2 C C2 ERG . . . E 2 -18.631 -10.676 -11.041 1 56.53 ? C2 ERG 801 A 1 HETATM 3 C C3 ERG . . . E 2 -19.369 -11.604 -10.114 1 62.73 ? C3 ERG 801 A 1 HETATM 4 C C4 ERG . . . E 2 -18.753 -13.003 -10.157 1 63.55 ? C4 ERG 801 A 1 HETATM 5 C C5 ERG . . . E 2 -18.639 -13.511 -11.496 1 44.04 ? C5 ERG 801 A 1 HETATM 6 C C6 ERG . . . E 2 -18.752 -14.878 -11.705 1 56.6 ? C6 ERG 801 A 1 HETATM 7 C C7 ERG . . . E 2 -18.588 -15.473 -12.967 1 50.39 ? C7 ERG 801 A 1 HETATM 8 C C8 ERG . . . E 2 -18.284 -14.693 -14.087 1 39.84 ? C8 ERG 801 A 1 HETATM 9 C C9 ERG . . . E 2 -18.375 -13.275 -13.962 1 49.44 ? C9 ERG 801 A 1 HETATM 10 C C10 ERG . . . E 2 -18.168 -12.68 -12.544 1 50.88 ? C10 ERG 801 A 1 HETATM 11 C C11 ERG . . . E 2 -17.57 -12.47 -15.069 1 52.91 ? C11 ERG 801 A 1 HETATM 12 C C12 ERG . . . E 2 -17.638 -13.122 -16.454 1 50.17 ? C12 ERG 801 A 1 HETATM 13 C C13 ERG . . . E 2 -17.184 -14.59 -16.318 1 43.25 ? C13 ERG 801 A 1 HETATM 14 C C14 ERG . . . E 2 -18.25 -15.258 -15.419 1 60.5 ? C14 ERG 801 A 1 HETATM 15 C C15 ERG . . . E 2 -17.895 -16.726 -15.555 1 49.96 ? C15 ERG 801 A 1 HETATM 16 C C16 ERG . . . E 2 -17.465 -16.877 -17.042 1 51.11 ? C16 ERG 801 A 1 HETATM 17 C C17 ERG . . . E 2 -17.394 -15.424 -17.585 1 48.53 ? C17 ERG 801 A 1 HETATM 18 C C18 ERG . . . E 2 -15.741 -14.726 -15.785 1 56.01 ? C18 ERG 801 A 1 HETATM 19 C C19 ERG . . . E 2 -16.635 -12.636 -12.292 1 56.04 ? C19 ERG 801 A 1 HETATM 20 C C20 ERG . . . E 2 -16.327 -15.35 -18.699 1 54.41 ? C20 ERG 801 A 1 HETATM 21 C C21 ERG . . . E 2 -16.101 -13.952 -19.263 1 60.99 ? C21 ERG 801 A 1 HETATM 22 C C22 ERG . . . E 2 -16.826 -16.258 -19.816 1 53.17 ? C22 ERG 801 A 1 HETATM 23 C C23 ERG . . . E 2 -16.088 -17.513 -20.161 1 49.47 ? C23 ERG 801 A 1 HETATM 24 C C24 ERG . . . E 2 -16.627 -18.425 -21.261 1 57.2 ? C24 ERG 801 A 1 HETATM 25 C C25 ERG . . . E 2 -15.683 -18.341 -22.468 1 74.03 ? C25 ERG 801 A 1 HETATM 26 C C26 ERG . . . E 2 -14.321 -18.913 -22.06 1 74.71 ? C26 ERG 801 A 1 HETATM 27 C C27 ERG . . . E 2 -15.458 -16.892 -22.936 1 78.82 ? C27 ERG 801 A 1 HETATM 28 C C28 ERG . . . E 2 -16.669 -19.827 -20.685 1 61.41 ? C28 ERG 801 A 1 HETATM 29 O O1 ERG . . . E 2 -19.345 -11.081 -8.737 1 76.29 ? O1 ERG 801 A 1 HETATM 30 H H11 ERG . . . E 2 -19.79 -11.282 -12.737 1 64.25 ? H11 ERG 801 A 1 HETATM 31 H H12 ERG . . . E 2 -18.105 -10.637 -13.081 1 64.25 ? H12 ERG 801 A 1 HETATM 32 H H21 ERG . . . E 2 -17.577 -10.728 -10.764 1 67.93 ? H21 ERG 801 A 1 HETATM 33 H H22A ERG . . . E 2 -19.08 -9.683 -11.011 1 67.93 ? H22A ERG 801 A 1 HETATM 34 H H3 ERG . . . E 2 -20.404 -11.677 -10.447 1 75.37 ? H3 ERG 801 A 1 HETATM 35 H H41 ERG . . . E 2 -17.757 -12.961 -9.716 1 76.36 ? H41 ERG 801 A 1 HETATM 36 H H42 ERG . . . E 2 -19.451 -13.652 -9.633 1 76.36 ? H42 ERG 801 A 1 HETATM 37 H H6 ERG . . . E 2 -18.979 -15.52 -10.852 1 68.01 ? H6 ERG 801 A 1 HETATM 38 H H7 ERG . . . E 2 -18.701 -16.551 -13.074 1 60.56 ? H7 ERG 801 A 1 HETATM 39 H H9 ERG . . . E 2 -19.415 -13.041 -14.188 1 59.42 ? H9 ERG 801 A 1 HETATM 40 H H111 ERG . . . E 2 -16.526 -12.413 -14.764 1 63.58 ? H111 ERG 801 A 1 HETATM 41 H H112 ERG . . . E 2 -18.079 -11.512 -15.16 1 63.58 ? H112 ERG 801 A 1 HETATM 42 H H121 ERG . . . E 2 -18.66 -13.084 -16.83 1 60.3 ? H121 ERG 801 A 1 HETATM 43 H H122 ERG . . . E 2 -16.886 -12.622 -17.067 1 60.3 ? H122 ERG 801 A 1 HETATM 44 H H14 ERG . . . E 2 -19.222 -15.105 -15.891 1 72.69 ? H14 ERG 801 A 1 HETATM 45 H H151 ERG . . . E 2 -18.757 -17.356 -15.335 1 60.04 ? H151 ERG 801 A 1 HETATM 46 H H152 ERG . . . E 2 -17.002 -16.896 -14.953 1 60.04 ? H152 ERG 801 A 1 HETATM 47 H H161 ERG . . . E 2 -16.491 -17.36 -17.114 1 61.42 ? H161 ERG 801 A 1 HETATM 48 H H162 ERG . . . E 2 -18.292 -17.365 -17.558 1 61.42 ? H162 ERG 801 A 1 HETATM 49 H H17 ERG . . . E 2 -18.363 -15.17 -18.015 1 58.33 ? H17 ERG 801 A 1 HETATM 50 H H181 ERG . . . E 2 -15.625 -14.124 -14.884 1 67.3 ? H181 ERG 801 A 1 HETATM 51 H H182 ERG . . . E 2 -15.037 -14.383 -16.543 1 67.3 ? H182 ERG 801 A 1 HETATM 52 H H183 ERG . . . E 2 -15.635 -15.793 -15.578 1 67.3 ? H183 ERG 801 A 1 HETATM 53 H H191 ERG . . . E 2 -16.228 -13.646 -12.358 1 67.35 ? H191 ERG 801 A 1 HETATM 54 H H192 ERG . . . E 2 -16.443 -12.232 -11.298 1 67.35 ? H192 ERG 801 A 1 HETATM 55 H H193 ERG . . . E 2 -16.255 -11.987 -13.08 1 67.35 ? H193 ERG 801 A 1 HETATM 56 H H20 ERG . . . E 2 -15.384 -15.74 -18.313 1 65.38 ? H20 ERG 801 A 1 HETATM 57 H H211 ERG . . . E 2 -17.042 -13.56 -19.651 1 73.28 ? H211 ERG 801 A 1 HETATM 58 H H212 ERG . . . E 2 -15.368 -13.999 -20.068 1 73.28 ? H212 ERG 801 A 1 HETATM 59 H H213 ERG . . . E 2 -15.738 -13.375 -18.413 1 73.28 ? H213 ERG 801 A 1 HETATM 60 H H22 ERG . . . E 2 -17.728 -15.993 -20.367 1 63.89 ? H22 ERG 801 A 1 HETATM 61 H H23 ERG . . . E 2 -15.171 -17.773 -19.633 1 59.46 ? H23 ERG 801 A 1 HETATM 62 H H24 ERG . . . E 2 -17.629 -18.107 -21.552 1 68.73 ? H24 ERG 801 A 1 HETATM 63 H H25 ERG . . . E 2 -16.091 -18.925 -23.293 1 88.93 ? H25 ERG 801 A 1 HETATM 64 H H261 ERG . . . E 2 -13.913 -18.328 -21.235 1 89.74 ? H261 ERG 801 A 1 HETATM 65 H H262 ERG . . . E 2 -13.64 -18.871 -22.909 1 89.74 ? H262 ERG 801 A 1 HETATM 66 H H263 ERG . . . E 2 -14.541 -19.938 -21.763 1 89.74 ? H263 ERG 801 A 1 HETATM 67 H H271 ERG . . . E 2 -15.048 -16.305 -22.112 1 94.68 ? H271 ERG 801 A 1 HETATM 68 H H272 ERG . . . E 2 -16.406 -16.461 -23.252 1 94.68 ? H272 ERG 801 A 1 HETATM 69 H H273 ERG . . . E 2 -14.753 -16.986 -23.761 1 94.68 ? H273 ERG 801 A 1 HETATM 70 H H281 ERG . . . E 2 -15.662 -20.133 -20.4 1 73.79 ? H281 ERG 801 A 1 HETATM 71 H H282 ERG . . . E 2 -17.059 -20.515 -21.434 1 73.79 ? H282 ERG 801 A 1 HETATM 72 H H283 ERG . . . E 2 -17.331 -19.744 -19.822 1 73.79 ? H283 ERG 801 A 1 HETATM 73 H HO1 ERG . . . E 2 -18.398 -11.011 -8.422 1 91.64 ? HO1 ERG 801 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 73 #